Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co7970336.1

Orthogroup ID

OG0000795

Physical Location & Seq

Genomic Coordinates Forward (+)

5 .. 481

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co7970336.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggagggagtagagcacagaacgatcaaagtcaacggcatcaacatgcacgtagccgagaaaggccaaggcccggttgtcctattcctccacggcttcccggagctctggtactcatggcggcaccaaatccagaccctggcatcgctcggctaccgagccgtggcgcctgacctccgtggcttcggcgacaccgacgcgccggccgactcgtcgagctacacttgcttacacgtggtgggagatctcgtggagctattggacgccgtcgccgccgaccaggagaaggtgttcgttgtcgggcacgactggggggcagtcatggcttggtatctttgcctgtttcggccggaccgagtcaaggctcttgtcagcttgagcgtgcaattttttcctagaaatcctcggagcaggactattgaatccatgaaagctgcttatggggacgactattatatttgcagatttcaggtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000287 GO:0001676 GO:0002532 GO:0002538 GO:0002539 GO:0003008 GO:0003013 GO:0003674 GO:0003824 GO:0004301 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006793 GO:0006796 GO:0006950 GO:0006952 GO:0006954 GO:0007600 GO:0008015 GO:0008150 GO:0008152 GO:0008217 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0016801 GO:0016803 GO:0019233 GO:0019752 GO:0030258 GO:0032501 GO:0032787 GO:0033559 GO:0042577 GO:0042578 GO:0042579 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043651 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045777 GO:0046839 GO:0046872 GO:0050877 GO:0050896 GO:0065007 GO:0065008 GO:0071704

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_1 Abhydrolase_6

Protein Analysis

158

Amino Acids

17.81

Weight (kDa)

6.04

Isoelectric Point (pI)

28.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000795)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26740 AT2G26750 AT3G05600 AT3G05600 AT4G15955 AT4G15955
fragaria_vesca	FvH4_2g25390 FvH4_4g18591 FvH4_4g18600 FvH4_4g18600
malus_domestica	MD16G1164900.v1.1 MD16G1165000.v1.1 MD16G1165100.v1.1 MD16G1165300.v1.1 MD16G1165500.v1.1 MD17G1016400.v1.1 MD17G1016500.v1.1
prunus_persica	Prupe.1G124200_v2.0.a1 Prupe.1G124300_v2.0.a1 Prupe.1G124500_v2.0.a1
pyrus_communis	pycom13g14130 pycom16g13960 pycom16g13970 pycom16g13980
rosa_chinensis	RchiOBHm_Chr4g0423281 RchiOBHm_Chr4g0423291 RchiOBHm_Chr4g0423301 RchiOBHm_Chr6g0293571
rosa_laevigata	RLG00000007570 RLG00000007572 RLG00000011940 RLG00000036336
rosa_multiflora	Rmu_co7970336.1_g000001 Rmu_co8074082.1_g000001 Rmu_sc0001290.1_g000009 Rmu_sc0001290.1_g000011 Rmu_sc0002038.1_g000001 Rmu_sc0002038.1_g000010 Rmu_sc0005142.1_g000038 Rmu_sc0006269.1_g000005 Rmu_sc0012160.1_g000002
rosa_roxburghii	Rroxscaffold_5G00365420 Rroxscaffold_5G00365470 Rroxscaffold_5G00365490 Rroxscaffold_7G00174080
rosa_rugosa	Rorug04G0185700 Rorug04G0185800 Rorug04G0185900 Rorug04G0186100 Rorug04G0186200 Rorug06G0236700
rosa_samantha	Rh4AG245400 Rh4AG245500 Rh4AG245600 Rh4BG250700 Rh4BG250900 Rh4BG251000 Rh4CG259000 Rh4CG259200 Rh4CG259400 Rh4DG245400 Rh4DG245600 Rh4DG245700 Rh4DG245800 Rh6CG363400 Rh6DG350300
rosa_wichuraiana	Rw4G021080 Rw4G021090 Rw6G030390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	123, 166
AccB7I	CCANNNNNTGG	1 cut(s)	139
AccII	CGCG	1 cut(s)	200
AciI	CCGC	2 cut(s)	121, 273
AcoI	YGGCCR	2 cut(s)	204, 347
AcvI	CACGTG	1 cut(s)	235
AcyI	GRCGYC	2 cut(s)	167, 264
AdeI	CACNNNGTG	1 cut(s)	238
AfaI	GTAC	1 cut(s)	113
AfiI	CCNNNNNNNGG	5 cut(s)	73, 139, 163, 286, 361
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	1 cut(s)	422
AjnI	CCWGG	2 cut(s)	138, 279
AloI	GAACNNNNNNTCC	2 cut(s)	275, 307
AluBI	AGCT	5 cut(s)	106, 219, 256, 375, 434
AluI	AGCT	5 cut(s)	106, 219, 256, 375, 434
Alw21I	GWGCWC	2 cut(s)	18, 108
AlwNI	CAGNNNCTG	1 cut(s)	139
AoxI	GGCC	4 cut(s)	64, 70, 204, 347
ApeKI	GCWGC	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	290
AspLEI	GCGC	2 cut(s)	169, 202
AspS9I	GGNCC	2 cut(s)	71, 352
AsuC2I	CCSGG	2 cut(s)	74, 101
AvaII	GGWCC	1 cut(s)	352
BaeGI	GKGCMC	1 cut(s)	306
BanI	GGYRCC	2 cut(s)	123, 166
BanII	GRGCYC	1 cut(s)	108
BauI	CACGAG	1 cut(s)	248
BbrPI	CACGTG	1 cut(s)	235
Bbv12I	GWGCWC	2 cut(s)	18, 108
BbvI	GCAGC	1 cut(s)	421
BceAI	ACGGC	4 cut(s)	52, 109, 146, 251
BciT130I	CCWGG	2 cut(s)	140, 281
BcnI	CCSGG	2 cut(s)	74, 101
BfaI	CTAG	1 cut(s)	396
BfoI	RGCGCY	1 cut(s)	170
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	3 cut(s)	122, 273, 435
BlsI	GCNGC	3 cut(s)	123, 274, 436
Bme1390I	CCNGG	4 cut(s)	74, 101, 140, 281
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	71, 352
BmiI	GGNNCC	2 cut(s)	125, 168
BmrFI	CCNGG	4 cut(s)	74, 101, 140, 281
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	48, 152
BmuI	ACTGGG	1 cut(s)	319
BpuEI	CTTGAG	1 cut(s)	397
BpuMI	CCSGG	2 cut(s)	74, 101
BsaAI	YACGTR	2 cut(s)	52, 235
BsaHI	GRCGYC	2 cut(s)	167, 264
BsaJI	CCNNGG	6 cut(s)	67, 91, 138, 162, 178, 404
BsaXI	ACNNNNNCTCC	6 cut(s)	95, 125, 234, 264, 275, 305
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 139, 163, 286, 361
Bse118I	RCCGGY	1 cut(s)	202
Bse1I	ACTGG	1 cut(s)	314
BseBI	CCWGG	2 cut(s)	140, 281
BseDI	CCNNGG	6 cut(s)	67, 91, 138, 162, 178, 404
BseLI	CCNNNNNNNGG	5 cut(s)	73, 139, 163, 286, 361
BseNI	ACTGG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	306
BseX3I	CGGCCG	2 cut(s)	204, 347
BseXI	GCAGC	1 cut(s)	421
Bsh1236I	CGCG	1 cut(s)	200
Bsh1285I	CGRYCG	2 cut(s)	207, 350
BshFI	GGCC	4 cut(s)	66, 72, 206, 349
BshNI	GGYRCC	2 cut(s)	123, 166
BsiEI	CGRYCG	2 cut(s)	207, 350
BsiHKAI	GWGCWC	2 cut(s)	18, 108
BsiSI	CCGG	4 cut(s)	74, 101, 203, 350
BslFI	GGGAC	1 cut(s)	458
BslI	CCNNNNNNNGG	5 cut(s)	73, 139, 163, 286, 361
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	4 cut(s)	66, 72, 206, 349
Bsp1286I	GDGCHC	3 cut(s)	18, 108, 306
Bsp143I	GATC	2 cut(s)	24, 244
BspACI	CCGC	2 cut(s)	121, 273
BspANI	GGCC	4 cut(s)	66, 72, 206, 349
BspFNI	CGCG	1 cut(s)	200
BspLI	GGNNCC	2 cut(s)	125, 168
BspT107I	GGYRCC	2 cut(s)	123, 166
BsrFI	RCCGGY	1 cut(s)	202
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	1 cut(s)	202
BssECI	CCNNGG	6 cut(s)	67, 91, 138, 162, 178, 404
BssMI	GATC	2 cut(s)	24, 244
BssNI	GRCGYC	2 cut(s)	167, 264
BssSI	CACGAG	1 cut(s)	248
BssT1I	CCWWGG	1 cut(s)	67
Bst2BI	CACGAG	1 cut(s)	248
Bst2UI	CCWGG	2 cut(s)	140, 281
BstACI	GRCGYC	2 cut(s)	167, 264
BstBAI	YACGTR	2 cut(s)	52, 235
BstC8I	GCNNGC	2 cut(s)	204, 383
BstDSI	CCRYGG	3 cut(s)	91, 162, 178
BstFNI	CGCG	1 cut(s)	200
BstH2I	RGCGCY	1 cut(s)	170
BstHHI	GCGC	2 cut(s)	169, 202
BstKTI	GATC	2 cut(s)	27, 247
BstMBI	GATC	2 cut(s)	24, 244
BstMCI	CGRYCG	2 cut(s)	207, 350
BstMWI	GCNNNNNNNGC	3 cut(s)	225, 272, 323
BstNI	CCWGG	2 cut(s)	140, 281
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	4 cut(s)	72, 99, 138, 279
BstSLI	GKGCMC	1 cut(s)	306
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	1 cut(s)	421
BstX2I	RGATCY	1 cut(s)	244
BstYI	RGATCY	1 cut(s)	244
BstZI	CGGCCG	2 cut(s)	204, 347
BsuRI	GGCC	4 cut(s)	66, 72, 206, 349
BtgI	CCRYGG	3 cut(s)	91, 162, 178
BtgZI	GCGATG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	204, 383
CaiI	CAGNNNCTG	1 cut(s)	139
CfoI	GCGC	2 cut(s)	169, 202
Cfr10I	RCCGGY	1 cut(s)	202
Cfr13I	GGNCC	2 cut(s)	71, 352
CpoI	CGGWCCG	1 cut(s)	352
CseI	GACGC	2 cut(s)	206, 272
Csp6I	GTAC	1 cut(s)	112
CspI	CGGWCCG	1 cut(s)	352
CviAII	CATG	4 cut(s)	46, 117, 322, 427
CviQI	GTAC	1 cut(s)	112
DinI	GGCGCC	1 cut(s)	168
DpnI	GATC	2 cut(s)	26, 246
DpnII	GATC	2 cut(s)	24, 244
DraIII	CACNNNGTG	1 cut(s)	238
EaeI	YGGCCR	2 cut(s)	204, 347
EagI	CGGCCG	2 cut(s)	204, 347
Ecl136II	GAGCTC	1 cut(s)	106
EclXI	CGGCCG	2 cut(s)	204, 347
Eco130I	CCWWGG	1 cut(s)	67
Eco24I	GRGCYC	1 cut(s)	108
Eco47I	GGWCC	1 cut(s)	352
Eco52I	CGGCCG	2 cut(s)	204, 347
Eco53kI	GAGCTC	1 cut(s)	106
Eco72I	CACGTG	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	106
EcoRII	CCWGG	2 cut(s)	138, 279
EcoT14I	CCWWGG	1 cut(s)	67
EcoT38I	GRGCYC	1 cut(s)	108
EgeI	GGCGCC	1 cut(s)	168
EheI	GGCGCC	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	67
FaeI	CATG	4 cut(s)	49, 120, 325, 430
FaiI	YATR	6 cut(s)	47, 118, 323, 428, 441, 456
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	4 cut(s)	45, 116, 321, 426
Fnu4HI	GCNGC	3 cut(s)	122, 273, 435
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	3 cut(s)	122, 273, 435
FspBI	CTAG	1 cut(s)	396
GlaI	GCGC	2 cut(s)	168, 201
GluI	GCNGC	3 cut(s)	122, 273, 435
HaeII	RGCGCY	1 cut(s)	170
HaeIII	GGCC	4 cut(s)	66, 72, 206, 349
HapII	CCGG	4 cut(s)	74, 101, 203, 350
HgaI	GACGC	2 cut(s)	206, 272
HhaI	GCGC	2 cut(s)	169, 202
Hin1I	GRCGYC	2 cut(s)	167, 264
Hin1II	CATG	4 cut(s)	49, 120, 325, 430
Hin6I	GCGC	2 cut(s)	167, 200
HinP1I	GCGC	2 cut(s)	167, 200
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	3 cut(s)	209, 357, 422
HpaII	CCGG	4 cut(s)	74, 101, 203, 350
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	1 cut(s)	133
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	3 cut(s)	200, 217, 272
HpyAV	CCTTC	1 cut(s)	280
HpyCH4IV	ACGT	2 cut(s)	51, 234
HpyCH4V	TGCA	3 cut(s)	49, 385, 462
HpyF10VI	GCNNNNNNNGC	3 cut(s)	225, 272, 323
HpySE526I	ACGT	2 cut(s)	51, 234
Hsp92I	GRCGYC	2 cut(s)	167, 264
Hsp92II	CATG	4 cut(s)	49, 120, 325, 430
HspAI	GCGC	2 cut(s)	167, 200
KasI	GGCGCC	1 cut(s)	166
KroI	GCCGGC	1 cut(s)	202
KroNI	GCCGGC	1 cut(s)	204
Kzo9I	GATC	2 cut(s)	24, 244
LmnI	GCTCC	3 cut(s)	103, 253, 408
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	2 cut(s)	48, 152
MaeI	CTAG	1 cut(s)	396
MaeII	ACGT	2 cut(s)	51, 234
MalI	GATC	2 cut(s)	26, 246
MboI	GATC	2 cut(s)	24, 244
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	3 cut(s)	18, 108, 306
MluCI	AATT	1 cut(s)	386
Mly113I	GGCGCC	1 cut(s)	167
MlyI	GAGTC	2 cut(s)	203, 366
MnlI	CCTC	3 cut(s)	98, 185, 414
MroNI	GCCGGC	1 cut(s)	202
MroXI	GAANNNNTTC	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	44
MspI	CCGG	4 cut(s)	74, 101, 203, 350
MspR9I	CCNGG	4 cut(s)	74, 101, 140, 281
MvaI	CCWGG	2 cut(s)	140, 281
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	225, 272, 323
NaeI	GCCGGC	1 cut(s)	204
NarI	GGCGCC	1 cut(s)	167
NciI	CCSGG	2 cut(s)	74, 101
NdeII	GATC	2 cut(s)	24, 244
NgoMIV	GCCGGC	1 cut(s)	202
NlaIII	CATG	4 cut(s)	49, 120, 325, 430
NlaIV	GGNNCC	2 cut(s)	125, 168
NmeAIII	GCCGAG	2 cut(s)	82, 129
NspI	RCATGY	1 cut(s)	49
PcsI	WCGNNNNNNNCGW	3 cut(s)	192, 204, 352
PdiI	GCCGGC	1 cut(s)	204
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	422
PflFI	GACNNNGTC	2 cut(s)	266, 356
PflMI	CCANNNNNTGG	1 cut(s)	139
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	123, 274, 436
PleI	GAGTC	2 cut(s)	203, 365
PluTI	GGCGCC	1 cut(s)	170
PmaCI	CACGTG	1 cut(s)	235
PmlI	CACGTG	1 cut(s)	235
PpsI	GAGTC	2 cut(s)	203, 365
Ppu21I	YACGTR	2 cut(s)	52, 235
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	2 cut(s)	138, 279
PspCI	CACGTG	1 cut(s)	235
PspGI	CCWGG	2 cut(s)	138, 279
PspN4I	GGNNCC	2 cut(s)	125, 168
PspPI	GGNCC	2 cut(s)	71, 352
PstNI	CAGNNNCTG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	244
PsyI	GACNNNGTC	2 cut(s)	266, 356
RsaI	GTAC	1 cut(s)	113
RsaNI	GTAC	1 cut(s)	112
RseI	CAYNNNNRTG	1 cut(s)	44
Rsr2I	CGGWCCG	1 cut(s)	352
RsrII	CGGWCCG	1 cut(s)	352
SacI	GAGCTC	1 cut(s)	108
SatI	GCNGC	3 cut(s)	122, 273, 435
Sau3AI	GATC	2 cut(s)	24, 244
Sau96I	GGNCC	2 cut(s)	71, 352
SchI	GAGTC	2 cut(s)	203, 366
ScrFI	CCNGG	4 cut(s)	74, 101, 140, 281
SduI	GDGCHC	3 cut(s)	18, 108, 306
SfaNI	GCATC	2 cut(s)	48, 152
SfoI	GGCGCC	1 cut(s)	168
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	376
SmoI	CTYRAG	1 cut(s)	376
Sse9I	AATT	1 cut(s)	386
SsiI	CCGC	2 cut(s)	121, 273
SspDI	GGCGCC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	396
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	4 cut(s)	72, 99, 138, 279
StyI	CCWWGG	1 cut(s)	67
TaiI	ACGT	2 cut(s)	54, 237
TaqI	TCGA	1 cut(s)	215
TaqII	GACCGA	1 cut(s)	369
TasI	AATT	1 cut(s)	386
TauI	GCSGC	2 cut(s)	124, 275
TfiI	GAWTC	1 cut(s)	422
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	1 cut(s)	443
TspGWI	ACGGA	1 cut(s)	167
Tth111I	GACNNNGTC	2 cut(s)	266, 356
Van91I	CCANNNNNTGG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	352
XceI	RCATGY	1 cut(s)	49
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.