AT4G26990

Has 30201 Blast hits to 17322 proteins in 780 species Archae - 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0001651
Physical Location & Seq
Reverse (-)
13550892 .. 13554436
3545 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G26990.1

Sequence Viewer

Length: 1425 bp
ATGGGAAACGCAAGGAAAGTGGAAGACGACGACAACAACAACAACAACAAGTCTTCATCATCGGTGTTAATAGCAGCAACTATGTGTATAATCGGATTGCAAGTTCATGTTCACGTCAAGGATGGTTCCGTCTTTTCTGGGATTTTCTTCACCGCTTCCGTCGACAATGGCTTTGGCATTGTTTTGAAGGATGCAAGAATTACTAAGAAGGGGACAAGTATATCGAATGTAGCAAGCGGGAGTGTGGTCGATACACTTGTTATTCTGTCTTCCACTATTGTTCAAATAATTGCGGAAGGAGTCTCGCTTCCATCAAATGTTACAACAGCCAATAATGAGGTCGGATCAGCCACAGAAACATTACCTTCTGAGCCTCGTTTATGTGCTGCAAATAAATCCACAAATGTTTCCACTCAAGGAAGGGGCTTTAATCATAAGAGGCAGGCTGGAGCTCAGATTTTGAAGCGTAGTGTACAAATTCCAGAGGTTTATCAACAGGATAATATTGATATCCAAAGCTCAAGTTCTAGCTTGGATAGCATGTCCGAACGAGTTAAACCTATAGAAGAAGATAACTTGATGCCGGAACCTCTTAGTAATGGTTTTCACAATGCTGCTGCAAAACCCTCTTCAACTGACAATTTATTGTCAGAAAGTACACCTGTTGATGACACCTTGGAATTGTGTCGGGGTAGAGTGGCGGCATCTTCAACTGCATCAGTACCTATCCAGGCCGTCAAAAAGCCTAAGGAGTTCAAGCTGAATCCAGAGGCTAAGATTTTTTCTCCGTCTTATACAAAACGGCTTTCACCGTCTCCTGTCGGTATGCCTCATGTTGGAAATATTGCTTACATACCAAGCAACACTCCCATGCTACCAGTTCCTGAAGCTATTTACCCAGAAGTTGTAAACAACCCTTATGTGCCGCAAGCACCTCCACCTTCTAAGTTTGTACCATATGGTAATGTGACCGCTGGACATGCTGTCGGTGGATTTCAATTTCCTCAACACATGATTGGGCCAACTGTTAACAGAGCACAGCCTCAGAGATACACCGCTCAGTACCATTCTGTTCAAGCTGCACCAATGCTTGTAAATCCAAGTCCTCAGGTGATGGTTGCAAGATCGGGGCAGCTTGTCTATGTCCAATCAGTTTCTCAGGATCTGGTTCAAGGAACACCGCCTCTCTCACCTATGCTCTCCTGCCCTCTACCTACCGCACAACATGTCCAATACCTGAAGCATCAAGGTGTAGTAGCAGCTGGCCAGCCGCTACCGCTATGTGTCTCCCTACCATTCACGACTGGTGGACCGCAACCTTATGGCATTCCCACCCAATTCCCAGCTATGCAGCAGCCTCCTTTCCCCACGAATCAGCCAATGACAGTTGCAGTTCCTAATGGTTTCTACACAAAGTTTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

474

Amino Acids

50.52

Weight (kDa)

8.18

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SM-ATX PF14438 23 - 99 3.5e-21 Ataxin 2 SM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1058
AccI GTMKAC 1 cut(s) 162
AclWI GGATC 2 cut(s) 352, 1170
AcoI YGGCCR 1 cut(s) 1264
AcsI RAATTY 1 cut(s) 477
AcuI CTGAAG 2 cut(s) 906, 1259
AfaI GTAC 5 cut(s) 474, 658, 723, 954, 1064
AfiI CCNNNNNNNGG 1 cut(s) 836
AflIII ACRYGT 1 cut(s) 1225
AgsI TTSAA 9 cut(s) 187, 284, 463, 633, 711, 757, 998, 1076, 1172
AhdI GACNNNNNGTC 1 cut(s) 983
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 729
AloI GAACNNNNNNTCC 2 cut(s) 87, 119
AluBI AGCT 9 cut(s) 452, 519, 531, 760, 890, 1079, 1135, 1262, 1346
AluI AGCT 9 cut(s) 452, 519, 531, 760, 890, 1079, 1135, 1262, 1346
Alw21I GWGCWC 2 cut(s) 454, 1039
Alw26I GTCTC 3 cut(s) 307, 819, 1291
AlwI GGATC 2 cut(s) 352, 1170
AlwNI CAGNNNCTG 2 cut(s) 884, 1165
AoxI GGCC 3 cut(s) 732, 1019, 1264
ApeKI GCWGC 9 cut(s) 74, 386, 614, 617, 1079, 1132, 1259, 1351, 1354
ApoI RAATTY 1 cut(s) 477
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspS9I GGNCC 2 cut(s) 1019, 1310
AsuHPI GGTGA 4 cut(s) 142, 801, 1123, 1182
AvaII GGWCC 1 cut(s) 1310
AxyI CCTNAGG 2 cut(s) 747, 1107
BaeI ACNNNNGTAYC 2 cut(s) 243, 276
BalI TGGCCA 1 cut(s) 1266
BanII GRGCYC 1 cut(s) 454
BbsI GAAGAC 3 cut(s) 30, 45, 261
Bbv12I GWGCWC 2 cut(s) 454, 1039
BbvI GCAGC 9 cut(s) 86, 373, 601, 604, 1066, 1144, 1271, 1363, 1366
BccI CCATC 3 cut(s) 116, 319, 1108
BceAI ACGGC 2 cut(s) 719, 818
BciT130I CCWGG 1 cut(s) 731
BcoDI GTCTC 3 cut(s) 307, 819, 1291
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 561
Bme1390I CCNGG 1 cut(s) 731
Bme18I GGWCC 1 cut(s) 1310
BmeRI GACNNNNNGTC 1 cut(s) 983
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 1019, 1310
BmiI GGNNCC 2 cut(s) 127, 588
BmrFI CCNGG 1 cut(s) 731
BmsI GCATC 5 cut(s) 181, 570, 713, 725, 1252
BpiI GAAGAC 3 cut(s) 30, 45, 261
BpmI CTGGAG 1 cut(s) 468
BpuEI CTTGAG 2 cut(s) 399, 505
BsaJI CCNNGG 1 cut(s) 675
Bsc4I CCNNNNNNNGG 1 cut(s) 836
Bse1I ACTGG 2 cut(s) 878, 1309
Bse21I CCTNAGG 2 cut(s) 747, 1107
BseBI CCWGG 1 cut(s) 731
BseDI CCNNGG 1 cut(s) 675
BseGI GGATG 2 cut(s) 127, 196
BseLI CCNNNNNNNGG 1 cut(s) 836
BseMII CTCAG 6 cut(s) 360, 467, 1058, 1073, 1121, 1172
BseNI ACTGG 2 cut(s) 878, 1309
BseXI GCAGC 9 cut(s) 86, 373, 601, 604, 1066, 1144, 1271, 1363, 1366
BseYI CCCAGC 1 cut(s) 1342
BsgI GTGCAG 1 cut(s) 1065
BshFI GGCC 3 cut(s) 734, 1021, 1266
BsiHKAI GWGCWC 2 cut(s) 454, 1039
BsiSI CCGG 1 cut(s) 584
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 836
BsmAI GTCTC 3 cut(s) 307, 819, 1291
BsmBI CGTCTC 1 cut(s) 819
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 1326
BsnI GGCC 3 cut(s) 734, 1021, 1266
Bsp1286I GDGCHC 2 cut(s) 454, 1039
Bsp1407I TGTACA 1 cut(s) 472
Bsp143I GATC 3 cut(s) 344, 1124, 1162
BspANI GGCC 3 cut(s) 734, 1021, 1266
BspCNI CTCAG 6 cut(s) 361, 466, 1057, 1072, 1120, 1171
BspLI GGNNCC 2 cut(s) 127, 588
BspPI GGATC 2 cut(s) 352, 1170
BsrBI CCGCTC 1 cut(s) 1058
BsrGI TGTACA 1 cut(s) 472
BsrI ACTGG 2 cut(s) 878, 1309
BssECI CCNNGG 1 cut(s) 675
BssMI GATC 3 cut(s) 344, 1124, 1162
BssT1I CCWWGG 1 cut(s) 675
Bst2UI CCWGG 1 cut(s) 731
Bst4CI ACNGT 3 cut(s) 813, 1027, 1387
Bst6I CTCTTC 1 cut(s) 634
BstAUI TGTACA 1 cut(s) 472
BstC8I GCNNGC 5 cut(s) 235, 444, 930, 1264, 1268
BstF5I GGATG 2 cut(s) 127, 196
BstKTI GATC 3 cut(s) 347, 1127, 1165
BstMAI GTCTC 3 cut(s) 307, 819, 1291
BstMBI GATC 3 cut(s) 344, 1124, 1162
BstMWI GCNNNNNNNGC 3 cut(s) 537, 980, 1276
BstNI CCWGG 1 cut(s) 731
BstNSI RCATGY 3 cut(s) 544, 983, 1229
BstSCI CCNGG 1 cut(s) 729
BstSFI CTRYAG 1 cut(s) 561
BstV1I GCAGC 9 cut(s) 86, 373, 601, 604, 1066, 1144, 1271, 1363, 1366
BstV2I GAAGAC 3 cut(s) 30, 45, 261
BstX2I RGATCY 1 cut(s) 1162
BstYI RGATCY 1 cut(s) 1162
Bsu36I CCTNAGG 2 cut(s) 747, 1107
BsuRI GGCC 3 cut(s) 734, 1021, 1266
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 2 cut(s) 127, 196
Cac8I GCNNGC 5 cut(s) 235, 444, 930, 1264, 1268
CaiI CAGNNNCTG 2 cut(s) 884, 1165
Cfr13I GGNCC 2 cut(s) 1019, 1310
Csp6I GTAC 5 cut(s) 473, 657, 722, 953, 1063
CspCI CAANNNNNGTGG 1 cut(s) 35
CviAII CATG 7 cut(s) 107, 541, 833, 871, 980, 1012, 1226
CviQI GTAC 5 cut(s) 473, 657, 722, 953, 1063
DpnI GATC 3 cut(s) 346, 1126, 1164
DpnII GATC 3 cut(s) 344, 1124, 1162
DriI GACNNNNNGTC 1 cut(s) 983
EaeI YGGCCR 1 cut(s) 1264
Eam1104I CTCTTC 1 cut(s) 634
Eam1105I GACNNNNNGTC 1 cut(s) 983
EarI CTCTTC 1 cut(s) 634
Ecl136II GAGCTC 1 cut(s) 452
Eco130I CCWWGG 1 cut(s) 675
Eco24I GRGCYC 1 cut(s) 454
Eco32I GATATC 1 cut(s) 511
Eco47I GGWCC 1 cut(s) 1310
Eco53kI GAGCTC 1 cut(s) 452
Eco57I CTGAAG 2 cut(s) 906, 1259
Eco81I CCTNAGG 2 cut(s) 747, 1107
EcoICRI GAGCTC 1 cut(s) 452
EcoRII CCWGG 1 cut(s) 729
EcoRV GATATC 1 cut(s) 511
EcoT14I CCWWGG 1 cut(s) 675
EcoT38I GRGCYC 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 675
Esp3I CGTCTC 1 cut(s) 819
FaeI CATG 7 cut(s) 110, 544, 836, 874, 983, 1015, 1229
FaqI GGGAC 1 cut(s) 226
FatI CATG 7 cut(s) 106, 540, 832, 870, 979, 1011, 1225
FauI CCCGC 1 cut(s) 230
FauNDI CATATG 1 cut(s) 958
FblI GTMKAC 1 cut(s) 162
FokI GGATG 2 cut(s) 134, 203
FriOI GRGCYC 1 cut(s) 454
FspBI CTAG 1 cut(s) 528
GsaI CCCAGC 1 cut(s) 1346
GsuI CTGGAG 1 cut(s) 468
HaeIII GGCC 3 cut(s) 734, 1021, 1266
HapII CCGG 1 cut(s) 584
Hin1II CATG 7 cut(s) 110, 544, 836, 874, 983, 1015, 1229
HincII GTYRAC 2 cut(s) 163, 1030
HindII GTYRAC 2 cut(s) 163, 1030
HinfI GANTC 3 cut(s) 300, 763, 1372
HpaI GTTAAC 1 cut(s) 1030
HpaII CCGG 1 cut(s) 584
HphI GGTGA 4 cut(s) 142, 801, 1123, 1182
Hpy166II GTNNAC 7 cut(s) 112, 163, 473, 659, 910, 1030, 1310
Hpy188I TCNGA 7 cut(s) 95, 344, 370, 456, 547, 652, 1047
Hpy188III TCNNGA 5 cut(s) 482, 767, 884, 1160, 1300
Hpy8I GTNNAC 7 cut(s) 112, 163, 473, 659, 910, 1030, 1310
Hpy99I CGWCG 2 cut(s) 32, 164
HpyAV CCTTC 6 cut(s) 181, 202, 290, 375, 414, 951
HpyCH4III ACNGT 3 cut(s) 813, 1027, 1387
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 9 cut(s) 100, 194, 389, 620, 716, 1082, 1121, 1351, 1391
HpyF10VI GCNNNNNNNGC 3 cut(s) 537, 980, 1276
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 7 cut(s) 110, 544, 836, 874, 983, 1015, 1229
KspAI GTTAAC 1 cut(s) 1030
Kzo9I GATC 3 cut(s) 344, 1124, 1162
LmnI GCTCC 1 cut(s) 449
Lsp1109I GCAGC 9 cut(s) 86, 373, 601, 604, 1066, 1144, 1271, 1363, 1366
LweI GCATC 5 cut(s) 181, 570, 713, 725, 1252
MaeI CTAG 1 cut(s) 528
MaeII ACGT 1 cut(s) 114
MaeIII GTNAC 2 cut(s) 319, 967
MalI GATC 3 cut(s) 346, 1126, 1164
MbiI CCGCTC 1 cut(s) 1058
MboI GATC 3 cut(s) 344, 1124, 1162
MboII GAAGA 8 cut(s) 35, 45, 139, 261, 578, 581, 621, 699
MflI RGATCY 1 cut(s) 1162
MhlI GDGCHC 2 cut(s) 454, 1039
MlsI TGGCCA 1 cut(s) 1266
MluCI AATT 7 cut(s) 198, 288, 477, 640, 680, 998, 1337
MluNI TGGCCA 1 cut(s) 1266
MlyI GAGTC 1 cut(s) 309
MmeI TCCRAC 2 cut(s) 322, 817
Mox20I TGGCCA 1 cut(s) 1266
MscI TGGCCA 1 cut(s) 1266
MseI TTAA 4 cut(s) 68, 429, 555, 1029
MslI CAYNNNNRTG 2 cut(s) 869, 1248
Msp20I TGGCCA 1 cut(s) 1266
MspA1I CMGCKG 2 cut(s) 974, 1262
MspI CCGG 1 cut(s) 584
MspR9I CCNGG 1 cut(s) 731
Mva1269I GAATGC 1 cut(s) 1326
MvaI CCWGG 1 cut(s) 731
MwoI GCNNNNNNNGC 3 cut(s) 537, 980, 1276
NdeI CATATG 1 cut(s) 958
NdeII GATC 3 cut(s) 344, 1124, 1162
NlaIII CATG 7 cut(s) 110, 544, 836, 874, 983, 1015, 1229
NlaIV GGNNCC 2 cut(s) 127, 588
NmuCI GTSAC 1 cut(s) 967
NspI RCATGY 3 cut(s) 544, 983, 1229
PciI ACATGT 1 cut(s) 1225
PctI GAATGC 1 cut(s) 1326
PfeI GAWTC 2 cut(s) 763, 1372
PleI GAGTC 1 cut(s) 308
PpsI GAGTC 1 cut(s) 308
PscI ACATGT 1 cut(s) 1225
Psp124BI GAGCTC 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 729
PspFI CCCAGC 1 cut(s) 1342
PspGI CCWGG 1 cut(s) 729
PspN4I GGNNCC 2 cut(s) 127, 588
PspPI GGNCC 2 cut(s) 1019, 1310
PstNI CAGNNNCTG 2 cut(s) 884, 1165
PsuI RGATCY 1 cut(s) 1162
PvuII CAGCTG 1 cut(s) 1262
RsaI GTAC 5 cut(s) 474, 658, 723, 954, 1064
RsaNI GTAC 5 cut(s) 473, 657, 722, 953, 1063
RseI CAYNNNNRTG 2 cut(s) 869, 1248
SacI GAGCTC 1 cut(s) 454
SalI GTCGAC 1 cut(s) 161
SaqAI TTAA 4 cut(s) 68, 429, 555, 1029
Sau3AI GATC 3 cut(s) 344, 1124, 1162
Sau96I GGNCC 2 cut(s) 1019, 1310
SchI GAGTC 1 cut(s) 309
ScrFI CCNGG 1 cut(s) 731
SduI GDGCHC 2 cut(s) 454, 1039
SfaNI GCATC 5 cut(s) 181, 570, 713, 725, 1252
SfcI CTRYAG 1 cut(s) 561
SinI GGWCC 1 cut(s) 1310
SmiMI CAYNNNNRTG 2 cut(s) 869, 1248
SmlI CTYRAG 2 cut(s) 414, 520
SmoI CTYRAG 2 cut(s) 414, 520
Sse9I AATT 7 cut(s) 198, 288, 477, 640, 680, 998, 1337
SspI AATATT 2 cut(s) 505, 844
SspMI CTAG 1 cut(s) 528
SstI GAGCTC 1 cut(s) 454
StyD4I CCNGG 1 cut(s) 729
StyI CCWWGG 1 cut(s) 675
TaaI ACNGT 3 cut(s) 813, 1027, 1387
TaiI ACGT 1 cut(s) 117
TaqI TCGA 3 cut(s) 162, 224, 249
TasI AATT 7 cut(s) 198, 288, 477, 640, 680, 998, 1337
TatI WGTACW 2 cut(s) 472, 656
TauI GCSGC 3 cut(s) 704, 928, 1273
TfiI GAWTC 2 cut(s) 763, 1372
Tru1I TTAA 4 cut(s) 68, 429, 555, 1029
Tru9I TTAA 4 cut(s) 68, 429, 555, 1029
TseFI GTSAC 1 cut(s) 967
TseI GCWGC 9 cut(s) 74, 386, 614, 617, 1079, 1132, 1259, 1351, 1354
Tsp45I GTSAC 1 cut(s) 967
TspDTI ATGAA 2 cut(s) 45, 95
TspGWI ACGGA 3 cut(s) 118, 148, 777
VpaK11BI GGWCC 1 cut(s) 1310
XapI RAATTY 1 cut(s) 477
XceI RCATGY 3 cut(s) 544, 983, 1229
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 1 cut(s) 528
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.