Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0001651

Physical Location & Seq

Genomic Coordinates Forward (+)

30340510 .. 30341353

Gene Structure 844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG262700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGACATCCAAGCTATTTCCTTTCGGAGTATCTTGTGATCCTTCCGCTGTAATTGTTCAACGAGACATTCAGTGCTGTGAGAGGACAACTTCAGAATACACTTCCTCTAATGTTGTTTCTTCAGGTTCCTCAACTTTGTTGAATCCAGCTGCTAATGTCTCAAGTCGTAATTCAGAAACAACATCAACTGAAATGATCCCTCATAGTTCAGAGTTAAATAAAAATGGCAAGGAATTTAAGCTCAACCCAGGAGCAAAAGTATTCTCACCATCTTTTACAAAGCCCATAGCAGCCACCTCTCCGGCAGTGCCACCAGTGGCAAGCATGGGTTTTATACCAACCAACTGCCCTGTGGTACCTGGTCCTGCCGTCCAGCCAGAAGTTGGATCGAATCCAACTATGTACTATGCCATTCTGGCCTGTGTACATTACTATGACCTGGTGATATTGATGAGAGCGAGATTGTTACCCCTGATGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 SM-ATX

Protein Analysis

160

Amino Acids

17.06

Weight (kDa)

7.62

Isoelectric Point (pI)

58.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26990 AT5G54920 AT5G54920
fragaria_vesca	FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540
malus_domestica	MD03G1202100.v1.1
prunus_persica	Prupe.4G211900_v2.0.a1 Prupe.4G211900_v2.0.a1 Prupe.4G211900_v2.0.a1
pyrus_communis	pycom03g15350
rosa_chinensis	RchiOBHm_Chr3g0473871 RchiOBHm_Chr5g0039281 RchiOBHm_Chr6g0266511
rosa_laevigata	RLG00000014150 RLG00000033903
rosa_multiflora	Rmu_sc0002080.1_g000048 Rmu_sc0002833.1_g000019 Rmu_sc0002911.1_g000009 Rmu_sc0006382.1_g000007 Rmu_ssc0000410.1_g000049
rosa_roxburghii	Rroxscaffold_1G00040480 Rroxscaffold_1G00041860 Rroxscaffold_4G00326800 Rroxscaffold_7G00192420
rosa_rugosa	Rorug05G0086200 Rorug05G0177600.1 Rorug05G0177700 Rorug05G0177700 Rorug06G0099600
rosa_samantha	Rh1BG106300 Rh2AG262700 Rh2CG308300 Rh2CG337800 Rh3AG070700 Rh3BG073200 Rh3CG071700 Rh4CG053500 Rh5AG264100 Rh5BG269200 Rh5CG302100 Rh5DG276800 Rh6BG146700 Rh6BG146800
rosa_wichuraiana	Rw5G024770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	355
AccB1I	GGYRCC	1 cut(s)	355
AccB7I	CCANNNNNTGG	1 cut(s)	383
AciI	CCGC	1 cut(s)	45
AclWI	GGATC	3 cut(s)	32, 190, 394
AcsI	RAATTY	1 cut(s)	233
AcuI	CTGAAG	2 cut(s)	75, 105
AfaI	GTAC	3 cut(s)	357, 404, 426
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	2 cut(s)	59, 142
AjnI	CCWGG	3 cut(s)	247, 358, 438
AluBI	AGCT	3 cut(s)	13, 149, 241
AluI	AGCT	3 cut(s)	13, 149, 241
Alw26I	GTCTC	2 cut(s)	57, 163
AlwI	GGATC	3 cut(s)	32, 190, 394
AoxI	GGCC	1 cut(s)	417
ApeKI	GCWGC	2 cut(s)	149, 290
ApoI	RAATTY	1 cut(s)	233
Asp718I	GGTACC	1 cut(s)	355
AspS9I	GGNCC	1 cut(s)	362
AsuHPI	GGTGA	2 cut(s)	258, 454
AvaII	GGWCC	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	136, 302
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	353
BciT130I	CCWGG	3 cut(s)	249, 360, 440
BcoDI	GTCTC	2 cut(s)	57, 163
BglI	GCCNNNNNGGC	1 cut(s)	416
BisI	GCNGC	2 cut(s)	150, 291
BlsI	GCNGC	2 cut(s)	151, 292
Bme1390I	CCNGG	3 cut(s)	249, 360, 440
Bme18I	GGWCC	1 cut(s)	362
BmgT120I	GGNCC	1 cut(s)	362
BmiI	GGNNCC	2 cut(s)	127, 357
BmrFI	CCNGG	3 cut(s)	249, 360, 440
BpuEI	CTTGAG	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	247
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	1 cut(s)	314
BseBI	CCWGG	3 cut(s)	249, 360, 440
BseDI	CCNNGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseNI	ACTGG	1 cut(s)	314
BseXI	GCAGC	2 cut(s)	136, 302
BshFI	GGCC	1 cut(s)	419
BshNI	GGYRCC	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	302
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	2 cut(s)	57, 163
BsnI	GGCC	1 cut(s)	419
Bsp1407I	TGTACA	1 cut(s)	424
Bsp143I	GATC	3 cut(s)	37, 195, 386
BspACI	CCGC	1 cut(s)	45
BspANI	GGCC	1 cut(s)	419
BspHI	TCATGA	1 cut(s)	479
BspLI	GGNNCC	2 cut(s)	127, 357
BspPI	GGATC	3 cut(s)	32, 190, 394
BspT107I	GGYRCC	1 cut(s)	355
BsrGI	TGTACA	1 cut(s)	424
BsrI	ACTGG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	247
BssMI	GATC	3 cut(s)	37, 195, 386
Bst2UI	CCWGG	3 cut(s)	249, 360, 440
BstAUI	TGTACA	1 cut(s)	424
BstC8I	GCNNGC	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	5
BstKTI	GATC	3 cut(s)	40, 198, 389
BstMAI	GTCTC	2 cut(s)	57, 163
BstMBI	GATC	3 cut(s)	37, 195, 386
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	3 cut(s)	249, 360, 440
BstSCI	CCNGG	3 cut(s)	247, 358, 438
BstV1I	GCAGC	2 cut(s)	136, 302
BsuRI	GGCC	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	5
BtsI	GCAGTG	1 cut(s)	312
BtsIMutI	CAGTG	3 cut(s)	77, 312, 321
Cac8I	GCNNGC	1 cut(s)	322
CciI	TCATGA	1 cut(s)	479
Cfr13I	GGNCC	1 cut(s)	362
CsiI	ACCWGGT	2 cut(s)	358, 438
Csp6I	GTAC	3 cut(s)	356, 403, 425
CviAII	CATG	2 cut(s)	325, 480
CviJI	RGCY	7 cut(s)	13, 149, 241, 283, 293, 376, 419
CviKI_1	RGCY	7 cut(s)	13, 149, 241, 283, 293, 376, 419
CviQI	GTAC	3 cut(s)	356, 403, 425
DpnI	GATC	3 cut(s)	39, 197, 388
DpnII	GATC	3 cut(s)	37, 195, 386
Eco47I	GGWCC	1 cut(s)	362
Eco57I	CTGAAG	2 cut(s)	75, 105
EcoRII	CCWGG	3 cut(s)	247, 358, 438
FaeI	CATG	2 cut(s)	328, 483
FaiI	YATR	8 cut(s)	204, 287, 326, 335, 401, 408, 435, 481
FatI	CATG	2 cut(s)	324, 479
Fnu4HI	GCNGC	2 cut(s)	150, 291
Fsp4HI	GCNGC	2 cut(s)	150, 291
GluI	GCNGC	2 cut(s)	150, 291
HaeIII	GGCC	1 cut(s)	419
HapII	CCGG	1 cut(s)	302
Hin1II	CATG	2 cut(s)	328, 483
HinfI	GANTC	2 cut(s)	142, 391
HpaII	CCGG	1 cut(s)	302
HphI	GGTGA	2 cut(s)	258, 454
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	4 cut(s)	26, 94, 175, 211
Hpy188III	TCNNGA	1 cut(s)	480
Hpy8I	GTNNAC	1 cut(s)	425
HpyAV	CCTTC	1 cut(s)	51
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
Hsp92II	CATG	2 cut(s)	328, 483
KpnI	GGTACC	1 cut(s)	359
Kzo9I	GATC	3 cut(s)	37, 195, 386
LmnI	GCTCC	1 cut(s)	251
Lsp1109I	GCAGC	2 cut(s)	136, 302
MabI	ACCWGGT	2 cut(s)	358, 438
MaeIII	GTNAC	1 cut(s)	465
MalI	GATC	3 cut(s)	39, 197, 388
MboI	GATC	3 cut(s)	37, 195, 386
MboII	GAAGA	1 cut(s)	111
MluCI	AATT	3 cut(s)	51, 169, 233
MmeI	TCCRAC	2 cut(s)	364, 419
MnlI	CCTC	5 cut(s)	75, 115, 139, 210, 307
MseI	TTAA	2 cut(s)	215, 237
MslI	CAYNNNNRTG	1 cut(s)	432
MspA1I	CMGCKG	2 cut(s)	47, 149
MspI	CCGG	1 cut(s)	302
MspR9I	CCNGG	3 cut(s)	249, 360, 440
MvaI	CCWGG	3 cut(s)	249, 360, 440
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	3 cut(s)	37, 195, 386
NlaIII	CATG	2 cut(s)	328, 483
NlaIV	GGNNCC	2 cut(s)	127, 357
PagI	TCATGA	1 cut(s)	479
PfeI	GAWTC	2 cut(s)	142, 391
PflMI	CCANNNNNTGG	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	151, 292
Psp6I	CCWGG	3 cut(s)	247, 358, 438
PspGI	CCWGG	3 cut(s)	247, 358, 438
PspN4I	GGNNCC	2 cut(s)	127, 357
PspPI	GGNCC	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	3 cut(s)	357, 404, 426
RsaNI	GTAC	3 cut(s)	356, 403, 425
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	215, 237
SatI	GCNGC	2 cut(s)	150, 291
Sau3AI	GATC	3 cut(s)	37, 195, 386
Sau96I	GGNCC	1 cut(s)	362
ScrFI	CCNGG	3 cut(s)	249, 360, 440
SetI	ASST	7 cut(s)	15, 127, 151, 243, 299, 361, 441
SexAI	ACCWGGT	2 cut(s)	358, 438
SinI	GGWCC	1 cut(s)	362
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	3 cut(s)	51, 169, 233
SsiI	CCGC	1 cut(s)	45
StyD4I	CCNGG	3 cut(s)	247, 358, 438
TaqI	TCGA	1 cut(s)	389
TasI	AATT	3 cut(s)	51, 169, 233
TatI	WGTACW	2 cut(s)	402, 424
TfiI	GAWTC	2 cut(s)	142, 391
Tru1I	TTAA	2 cut(s)	215, 237
Tru9I	TTAA	2 cut(s)	215, 237
TscAI	CASTG	3 cut(s)	77, 312, 321
TseI	GCWGC	2 cut(s)	149, 290
TspRI	CASTG	3 cut(s)	77, 312, 321
Van91I	CCANNNNNTGG	1 cut(s)	383
VpaK11BI	GGWCC	1 cut(s)	362
XapI	RAATTY	1 cut(s)	233
XcmI	CCANNNNNNNNNTGG	2 cut(s)	349, 380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.