Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006382.1

Orthogroup ID

OG0001651

Physical Location & Seq

Genomic Coordinates Reverse (-)

47241 .. 48572

Gene Structure 1332 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006382.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atggttcctgggtcacaccttcgatcgattttgggcctggtcttcgctctatcaagagggctatcgctgctagaaatccaaagcacaaacttgccctcacactctctctctctatctctctcggctctgtctactccggaatcttccacactgcttctgtggaaaatgaatacgggttatggtgatccagttgtttgggatcagatagtttctaatatgggcattgttttgaagaaagcaaggataactaaaaagggaaaatctgatgcgaatgtagcaaatggggagttgatagatactcttgtgattctttctggtgaccttgtccaagttgttacaaagggagttttacttccagttgatggtattgctggaaatatgtctggtgacagaattgaagctgttatgggtactgtttcttctgatgagtgttcaaagaatggtgcgaagaagtcaagtgagtctgccataaatacgaagaagggtggaggggtgctaatgcaaaatgggaatagctttcatggtgttacacccacaagggctggcaaggaacatggagagtttgcactagagtcgaggatggttatggaagggggcggattaggagattgcagtttcgagaaggagattgcaatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 SM-ATX

Protein Analysis

212

Amino Acids

22.18

Weight (kDa)

6.43

Isoelectric Point (pI)

28.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26990 AT5G54920 AT5G54920
fragaria_vesca	FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540
malus_domestica	MD03G1202100.v1.1
prunus_persica	Prupe.4G211900_v2.0.a1 Prupe.4G211900_v2.0.a1 Prupe.4G211900_v2.0.a1
pyrus_communis	pycom03g15350
rosa_chinensis	RchiOBHm_Chr3g0473871 RchiOBHm_Chr5g0039281 RchiOBHm_Chr6g0266511
rosa_laevigata	RLG00000014150 RLG00000033903
rosa_multiflora	Rmu_sc0002080.1_g000048 Rmu_sc0002833.1_g000019 Rmu_sc0002911.1_g000009 Rmu_sc0006382.1_g000007 Rmu_ssc0000410.1_g000049
rosa_roxburghii	Rroxscaffold_1G00040480 Rroxscaffold_1G00041860 Rroxscaffold_4G00326800 Rroxscaffold_7G00192420
rosa_rugosa	Rorug05G0086200 Rorug05G0177600.1 Rorug05G0177700 Rorug05G0177700 Rorug06G0099600
rosa_samantha	Rh1BG106300 Rh2AG262700 Rh2CG308300 Rh2CG337800 Rh3AG070700 Rh3BG073200 Rh3CG071700 Rh4CG053500 Rh5AG264100 Rh5BG269200 Rh5CG302100 Rh5DG276800 Rh6BG146700 Rh6BG146800
rosa_wichuraiana	Rw5G024770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	131
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	1 cut(s)	597
AclWI	GGATC	2 cut(s)	179, 207
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	1 cut(s)	362
AgsI	TTSAA	3 cut(s)	232, 398, 435
AjnI	CCWGG	2 cut(s)	7, 36
AluBI	AGCT	2 cut(s)	401, 516
AluI	AGCT	2 cut(s)	401, 516
AlwI	GGATC	2 cut(s)	179, 207
Aor13HI	TCCGGA	1 cut(s)	136
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	34
AsuHPI	GGTGA	3 cut(s)	194, 329, 398
BaeI	ACNNNNGTAYC	2 cut(s)	288, 321
BarI	GAAGNNNNNNTAC	2 cut(s)	403, 435
BbsI	GAAGAC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	54
BccI	CCATC	2 cut(s)	356, 574
BcgI	CGANNNNNNTGC	2 cut(s)	555, 589
BciT130I	CCWGG	2 cut(s)	9, 38
BfaI	CTAG	2 cut(s)	71, 569
BisI	GCNGC	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	69
Bme1390I	CCNGG	2 cut(s)	9, 38
BmgT120I	GGNCC	1 cut(s)	34
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	9, 38
BmsI	GCATC	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	34
Bsa29I	ATCGAT	1 cut(s)	26
BsaBI	GATNNNNATC	1 cut(s)	632
BsaJI	CCNNGG	1 cut(s)	8
BsaWI	WCCGGW	1 cut(s)	136
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	188, 356
Bse8I	GATNNNNATC	1 cut(s)	632
BseAI	TCCGGA	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	9, 38
BseCI	ATCGAT	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	585
BseJI	GATNNNNATC	1 cut(s)	632
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseNI	ACTGG	2 cut(s)	188, 356
BseXI	GCAGC	1 cut(s)	54
Bsh1285I	CGRYCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	36
BshVI	ATCGAT	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	26
BsiSI	CCGG	1 cut(s)	137
BslI	CCNNNNNNNGG	1 cut(s)	362
BsnI	GGCC	1 cut(s)	36
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	3 cut(s)	23, 184, 199
BspACI	CCGC	1 cut(s)	597
BspANI	GGCC	1 cut(s)	36
BspDI	ATCGAT	1 cut(s)	26
BspEI	TCCGGA	1 cut(s)	136
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	2 cut(s)	179, 207
BsrI	ACTGG	2 cut(s)	188, 356
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	3 cut(s)	23, 184, 199
Bst2UI	CCWGG	2 cut(s)	9, 38
Bst4CI	ACNGT	1 cut(s)	415
BstC8I	GCNNGC	1 cut(s)	544
BstEII	GGTNACC	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	585
BstKTI	GATC	3 cut(s)	26, 187, 202
BstMBI	GATC	3 cut(s)	23, 184, 199
BstMCI	CGRYCG	1 cut(s)	26
BstMWI	GCNNNNNNNGC	2 cut(s)	67, 275
BstNI	CCWGG	2 cut(s)	9, 38
BstPI	GGTNACC	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	7, 36
BstV1I	GCAGC	1 cut(s)	54
BstV2I	GAAGAC	1 cut(s)	34
BstXI	CCANNNNNNTGG	1 cut(s)	195
Bsu15I	ATCGAT	1 cut(s)	26
BsuRI	GGCC	1 cut(s)	36
BsuTUI	ATCGAT	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	585
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	1 cut(s)	149
Cac8I	GCNNGC	1 cut(s)	544
Cfr13I	GGNCC	1 cut(s)	34
ClaI	ATCGAT	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	2 cut(s)	521, 554
CviJI	RGCY	6 cut(s)	36, 61, 125, 401, 516, 542
CviKI_1	RGCY	6 cut(s)	36, 61, 125, 401, 516, 542
CviQI	GTAC	1 cut(s)	411
DpnI	GATC	3 cut(s)	25, 186, 201
DpnII	GATC	3 cut(s)	23, 184, 199
EciI	GGCGGA	1 cut(s)	612
Eco91I	GGTNACC	1 cut(s)	317
EcoO65I	GGTNACC	1 cut(s)	317
EcoRII	CCWGG	2 cut(s)	7, 36
FaeI	CATG	2 cut(s)	524, 557
FaiI	YATR	8 cut(s)	180, 218, 380, 407, 470, 522, 555, 587
FatI	CATG	2 cut(s)	520, 553
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	1 cut(s)	68
FokI	GGATG	1 cut(s)	592
Fsp4HI	GCNGC	1 cut(s)	68
FspBI	CTAG	2 cut(s)	71, 569
GluI	GCNGC	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	36
HapII	CCGG	1 cut(s)	137
Hin1II	CATG	2 cut(s)	524, 557
HinfI	GANTC	4 cut(s)	140, 307, 461, 572
HpaII	CCGG	1 cut(s)	137
HphI	GGTGA	3 cut(s)	194, 329, 398
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	3 cut(s)	204, 265, 424
Hpy188III	TCNNGA	3 cut(s)	54, 137, 619
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	4 cut(s)	29, 475, 584, 616
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	4 cut(s)	502, 566, 612, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	67, 275
Hsp92II	CATG	2 cut(s)	524, 557
Kpn2I	TCCGGA	1 cut(s)	136
Kzo9I	GATC	3 cut(s)	23, 184, 199
Lsp1109I	GCAGC	1 cut(s)	54
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	71, 569
MaeIII	GTNAC	5 cut(s)	12, 317, 334, 386, 526
MalI	GATC	3 cut(s)	25, 186, 201
MboI	GATC	3 cut(s)	23, 184, 199
MboII	GAAGA	6 cut(s)	34, 135, 244, 411, 460, 490
MluCI	AATT	1 cut(s)	393
MlyI	GAGTC	2 cut(s)	470, 581
MnlI	CCTC	4 cut(s)	50, 106, 482, 570
MroI	TCCGGA	1 cut(s)	136
MspI	CCGG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	9, 38
MvaI	CCWGG	2 cut(s)	9, 38
MwoI	GCNNNNNNNGC	2 cut(s)	67, 275
NdeII	GATC	3 cut(s)	23, 184, 199
NlaIII	CATG	2 cut(s)	524, 557
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	101
NmuCI	GTSAC	3 cut(s)	12, 317, 386
PfeI	GAWTC	2 cut(s)	140, 307
PflFI	GACNNNGTC	1 cut(s)	323
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	69
Ple19I	CGATCG	1 cut(s)	26
PleI	GAGTC	2 cut(s)	469, 580
PpsI	GAGTC	2 cut(s)	469, 580
Psp6I	CCWGG	2 cut(s)	7, 36
PspEI	GGTNACC	1 cut(s)	317
PspGI	CCWGG	2 cut(s)	7, 36
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	34
PsyI	GACNNNGTC	1 cut(s)	323
PvuI	CGATCG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SatI	GCNGC	1 cut(s)	68
Sau3AI	GATC	3 cut(s)	23, 184, 199
Sau96I	GGNCC	1 cut(s)	34
SchI	GAGTC	2 cut(s)	470, 581
ScrFI	CCNGG	2 cut(s)	9, 38
SetI	ASST	4 cut(s)	21, 324, 403, 518
SfaNI	GCATC	1 cut(s)	256
Sse9I	AATT	1 cut(s)	393
SsiI	CCGC	1 cut(s)	597
SspMI	CTAG	2 cut(s)	71, 569
StyD4I	CCNGG	2 cut(s)	7, 36
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	4 cut(s)	22, 26, 575, 618
TasI	AATT	1 cut(s)	393
TfiI	GAWTC	2 cut(s)	140, 307
TscAI	CASTG	1 cut(s)	156
TseFI	GTSAC	3 cut(s)	12, 317, 386
TseI	GCWGC	1 cut(s)	67
Tsp45I	GTSAC	3 cut(s)	12, 317, 386
TspDTI	ATGAA	2 cut(s)	182, 509
TspRI	CASTG	1 cut(s)	156
Tth111I	GACNNNGTC	1 cut(s)	323
Van91I	CCANNNNNTGG	1 cut(s)	362
XmiI	GTMKAC	1 cut(s)	131
XspI	CTAG	2 cut(s)	71, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.