FvH4_3g22540

Ataxin 2 SM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001651
Physical Location & Seq
Forward (+)
15542701 .. 15548861
6161 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22540.t6

Sequence Viewer

Length: 1575 bp
ATGGGGTGCAGAAACAGAGAGCTCACAGAAGATGGTCCCCTTTCTTCTTCTTCTTCTTCATTAAGCGACGCCTTGCTGTTTGCGACCATGTGCATCATTGGTCTCCCAGTTGATGTTCACGTCAAGGACGGCTCTGTTTACTCCGGAATCTTCCACACTGCTTCTGTGGAAAACGAATACGGCATTGTTTTGAAGAAATCAAGGATGACTAAAAAGGGAAAAGCTGATGCAAATATACCAAATGGGGAACTGATAGAGACTCTTGTGATTCTTTCGGGTGACCTTGTCCAAGTTGTTACAAAGGGACTTTCACTTCCGGCTGATGATGTTGCTGGAAATATGTCTGGTGACAGAATTGAAGCTGTTGCGGGTACTGTTTCGTCTGATGAGTGTTCAAAGAATAGTGTGAAGAAGTCAAGTGAGTCGAACATAAATAAGAAGAAAGGTGGAAGGGTGCTAATGGAAAATGGGAATGGCTGTCATTGTGTTACACCCACAAGAGCTGGCAAGGAACATGGTGGGAGAAATATGCCACTGAATCATATTGAGAATGCCTCAGAACTTGTAAAAGAGAAAACTGATAGTGTAAACTTATCAGAGATTAGAGAATCCTTTGGTGCTAGCATGAATAGGAGACAGGAGGATGATGGGTCTCAAGGGAAGCAGGATGATTTCAACCAAAAACTAGAGGTTCATAGGGAAGAAAGCGCTGACAATGTTCAGGATACAAAGATGACATCCAAGCCATTTCCTCTCAGAGTATCTTGTGATCCATCTACTACAATTGTTCGACGAGACATTCAGTTCTGTGAAAGGAAAACTTCAGAATACACTTCTTCCAGTTCAAGTGTTGTTTCTTCAGGTTCCTCAACTTTGTTGAATCCAGCTGCTAATGTCTCAAGTCGTAATTCAGAACCAACATCAACTGCAATGATCCCTCATGATTCAGAGTTAAATAAAAGTGGCAAGGAATTTAAGCTCAACCCAGGAGCAAAAGTATTCTCGCCATCTTTCACAAAGCCCACAGCAGCCACCTCTCCTGCACTGCCAGCAGTGGCAAGCATGGGCATGGGTTTTATACCAACCAACTGCCCTGTGATACCTGGTCCAACCGTCCAGCCAGAAGTTGGATCGAATCCTTTCCAATCCCGTACATCTGTGCCTGTTAAGGTTGTCCCATACAATAATTTCTCAACTGGGAACGGTGGTGGTGCCTCGCAATTTTCACAACCTATTGTTGGACACATGAGCAGTAGGGCGCAGACAGTTAGGTATGCTGGTCAGTATCCTGTTCAGGCTGGACCGACCTATGTACATCCAAATTCTCAAGCTGCTATGGTAGGACGATTTGGACAGCTTGTCTATGTGCATCCAGTTTCTCAAGATTTGGTTCAGGGTACACCAGCCATGTCACCACTATCTGCATGTCCTATGTTGACTCCACACCAGGTCCAGTTTCCGAAGCACCAAGGCCAATCATTGCTGTGTGTGCCTCCGCAGTTCATGGCTACTGGACAGCAGCCTTTTCCCATTGCCAAGTCACATCCAATTTTTGCAACCTCCCTTCCGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

525

Amino Acids

55.87

Weight (kDa)

7.98

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1211
AccB7I CCANNNNNTGG 1 cut(s) 1127
AccIII TCCGGA 1 cut(s) 143
AciI CCGC 2 cut(s) 368, 1496
AclWI GGATC 3 cut(s) 764, 928, 1138
AcsI RAATTY 2 cut(s) 971, 1321
AcuI CTGAAG 2 cut(s) 807, 843
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 4 cut(s) 373, 1153, 1314, 1399
AfeI AGCGCT 1 cut(s) 709
AfiI CCNNNNNNNGG 2 cut(s) 1127, 1238
AgsI TTSAA 6 cut(s) 193, 359, 396, 676, 846, 880
AhdI GACNNNNNGTC 1 cut(s) 1358
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 3 cut(s) 985, 1102, 1446
AluBI AGCT 8 cut(s) 22, 224, 362, 503, 887, 979, 1331, 1357
AluI AGCT 8 cut(s) 22, 224, 362, 503, 887, 979, 1331, 1357
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 6 cut(s) 107, 251, 628, 657, 789, 901
AlwI GGATC 3 cut(s) 764, 928, 1138
Aor13HI TCCGGA 1 cut(s) 143
Aor51HI AGCGCT 1 cut(s) 709
AoxI GGCC 1 cut(s) 1471
ApeKI GCWGC 4 cut(s) 887, 1028, 1331, 1519
ApoI RAATTY 2 cut(s) 971, 1321
Asp700I GAANNNNTTC 1 cut(s) 1139
AspLEI GCGC 2 cut(s) 710, 1261
AspS9I GGNCC 4 cut(s) 35, 1106, 1301, 1450
AsuHPI GGTGA 3 cut(s) 290, 359, 1404
AsuNHI GCTAGC 1 cut(s) 620
AvaII GGWCC 4 cut(s) 35, 1106, 1301, 1450
BanI GGYRCC 1 cut(s) 1211
BanII GRGCYC 1 cut(s) 24
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 4 cut(s) 874, 1040, 1318, 1531
BccI CCATC 4 cut(s) 26, 641, 781, 1015
BceAI ACGGC 2 cut(s) 145, 196
BciT130I CCWGG 3 cut(s) 987, 1104, 1448
BciVI GTATCC 2 cut(s) 718, 1296
BcoDI GTCTC 6 cut(s) 107, 251, 628, 657, 789, 901
BfaI CTAG 2 cut(s) 621, 686
BfoI RGCGCY 1 cut(s) 711
BfuI GTATCC 2 cut(s) 718, 1296
BisI GCNGC 4 cut(s) 888, 1029, 1332, 1520
BlsI GCNGC 4 cut(s) 889, 1030, 1333, 1521
Bme1390I CCNGG 3 cut(s) 987, 1104, 1448
Bme18I GGWCC 4 cut(s) 35, 1106, 1301, 1450
BmeRI GACNNNNNGTC 1 cut(s) 1358
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 4 cut(s) 35, 1106, 1301, 1450
BmiI GGNNCC 3 cut(s) 37, 865, 1213
BmrFI CCNGG 3 cut(s) 987, 1104, 1448
BmrI ACTGGG 2 cut(s) 101, 1206
BmsI GCATC 3 cut(s) 102, 217, 1378
BmtI GCTAGC 1 cut(s) 624
BmuI ACTGGG 2 cut(s) 101, 1206
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpuEI CTTGAG 4 cut(s) 639, 883, 1311, 1365
BsaHI GRCGYC 1 cut(s) 69
BsaI GGTCTC 2 cut(s) 107, 657
BsaJI CCNNGG 2 cut(s) 985, 1468
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 981, 1011
Bsc4I CCNNNNNNNGG 2 cut(s) 1127, 1238
Bse1I ACTGG 6 cut(s) 107, 840, 1201, 1373, 1453, 1516
Bse3DI GCAATG 3 cut(s) 936, 1478, 1530
BseAI TCCGGA 1 cut(s) 143
BseBI CCWGG 3 cut(s) 987, 1104, 1448
BseDI CCNNGG 2 cut(s) 985, 1468
BseGI GGATG 7 cut(s) 210, 649, 673, 737, 1315, 1369, 1543
BseLI CCNNNNNNNGG 2 cut(s) 1127, 1238
BseMI GCAATG 3 cut(s) 936, 1478, 1530
BseMII CTCAG 2 cut(s) 570, 769
BseNI ACTGG 6 cut(s) 107, 840, 1201, 1373, 1453, 1516
BseXI GCAGC 4 cut(s) 874, 1040, 1318, 1531
BsgI GTGCAG 2 cut(s) 28, 1026
BshFI GGCC 1 cut(s) 1473
BshNI GGYRCC 1 cut(s) 1211
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 144, 317
BslFI GGGAC 3 cut(s) 21, 318, 1160
BslI CCNNNNNNNGG 2 cut(s) 1127, 1238
BsmAI GTCTC 6 cut(s) 107, 251, 628, 657, 789, 901
BsmFI GGGAC 3 cut(s) 21, 318, 1160
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 1 cut(s) 1473
Bso31I GGTCTC 2 cut(s) 107, 657
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 143
Bsp1407I TGTACA 1 cut(s) 1312
Bsp143I GATC 3 cut(s) 769, 933, 1130
BspACI CCGC 2 cut(s) 368, 1496
BspANI GGCC 1 cut(s) 1473
BspCNI CTCAG 2 cut(s) 569, 768
BspEI TCCGGA 1 cut(s) 143
BspHI TCATGA 1 cut(s) 940
BspLI GGNNCC 3 cut(s) 37, 865, 1213
BspOI GCTAGC 1 cut(s) 624
BspPI GGATC 3 cut(s) 764, 928, 1138
BspT107I GGYRCC 1 cut(s) 1211
BspTNI GGTCTC 2 cut(s) 107, 657
BsrDI GCAATG 3 cut(s) 936, 1478, 1530
BsrGI TGTACA 1 cut(s) 1312
BsrI ACTGG 6 cut(s) 107, 840, 1201, 1373, 1453, 1516
BssECI CCNNGG 2 cut(s) 985, 1468
BssMI GATC 3 cut(s) 769, 933, 1130
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 1468
Bst2UI CCWGG 3 cut(s) 987, 1104, 1448
Bst4CI ACNGT 4 cut(s) 376, 1114, 1205, 1267
BstACI GRCGYC 1 cut(s) 69
BstAUI TGTACA 1 cut(s) 1312
BstC8I GCNNGC 4 cut(s) 505, 622, 1050, 1060
BstDEI CTNAG 2 cut(s) 556, 755
BstEII GGTNACC 1 cut(s) 278
BstF5I GGATG 7 cut(s) 210, 649, 673, 737, 1315, 1369, 1543
BstH2I RGCGCY 1 cut(s) 711
BstHHI GCGC 2 cut(s) 710, 1261
BstKTI GATC 3 cut(s) 772, 936, 1133
BstMAI GTCTC 6 cut(s) 107, 251, 628, 657, 789, 901
BstMBI GATC 3 cut(s) 769, 933, 1130
BstMWI GCNNNNNNNGC 2 cut(s) 1049, 1489
BstNI CCWGG 3 cut(s) 987, 1104, 1448
BstNSI RCATGY 1 cut(s) 1428
BstPI GGTNACC 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 985, 1102, 1446
BstV1I GCAGC 4 cut(s) 874, 1040, 1318, 1531
BsuI GTATCC 2 cut(s) 718, 1296
BsuRI GGCC 1 cut(s) 1473
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 7 cut(s) 210, 649, 673, 737, 1315, 1369, 1543
BtsI GCAGTG 3 cut(s) 156, 1043, 1059
BtsIMutI CAGTG 4 cut(s) 156, 533, 1043, 1059
Cac8I GCNNGC 4 cut(s) 505, 622, 1050, 1060
CciI TCATGA 1 cut(s) 940
CfoI GCGC 2 cut(s) 710, 1261
Cfr13I GGNCC 4 cut(s) 35, 1106, 1301, 1450
CseI GACGC 1 cut(s) 77
CsiI ACCWGGT 2 cut(s) 1102, 1446
Csp6I GTAC 4 cut(s) 372, 1152, 1313, 1398
CviQI GTAC 4 cut(s) 372, 1152, 1313, 1398
DdeI CTNAG 2 cut(s) 556, 755
DpnI GATC 3 cut(s) 771, 935, 1132
DpnII GATC 3 cut(s) 769, 933, 1130
DriI GACNNNNNGTC 1 cut(s) 1358
Eam1105I GACNNNNNGTC 1 cut(s) 1358
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 1468
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 2 cut(s) 107, 657
Eco47I GGWCC 4 cut(s) 35, 1106, 1301, 1450
Eco47III AGCGCT 1 cut(s) 709
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 2 cut(s) 807, 843
Eco91I GGTNACC 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 22
EcoO65I GGTNACC 1 cut(s) 278
EcoRII CCWGG 3 cut(s) 985, 1102, 1446
EcoT14I CCWWGG 1 cut(s) 1468
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 1468
FalI AAGNNNNNCTT 2 cut(s) 805, 837
FaqI GGGAC 3 cut(s) 21, 318, 1160
FauI CCCGC 1 cut(s) 361
Fnu4HI GCNGC 4 cut(s) 888, 1029, 1332, 1520
FokI GGATG 7 cut(s) 217, 656, 680, 724, 1302, 1356, 1530
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 4 cut(s) 888, 1029, 1332, 1520
FspBI CTAG 2 cut(s) 621, 686
GlaI GCGC 2 cut(s) 709, 1260
GluI GCNGC 4 cut(s) 888, 1029, 1332, 1520
HaeII RGCGCY 1 cut(s) 711
HaeIII GGCC 1 cut(s) 1473
HapII CCGG 2 cut(s) 144, 317
HgaI GACGC 1 cut(s) 77
HhaI GCGC 2 cut(s) 710, 1261
Hin1I GRCGYC 1 cut(s) 69
Hin6I GCGC 2 cut(s) 708, 1259
HinP1I GCGC 2 cut(s) 708, 1259
HincII GTYRAC 1 cut(s) 1437
HindII GTYRAC 1 cut(s) 1437
HpaII CCGG 2 cut(s) 144, 317
HphI GGTGA 3 cut(s) 290, 359, 1404
Hpy166II GTNNAC 5 cut(s) 118, 139, 589, 1400, 1437
Hpy188I TCNGA 8 cut(s) 385, 559, 598, 758, 826, 913, 949, 1461
Hpy188III TCNNGA 4 cut(s) 144, 722, 941, 1382
Hpy8I GTNNAC 5 cut(s) 118, 139, 589, 1400, 1437
Hpy99I CGWCG 2 cut(s) 71, 795
HpyAV CCTTC 2 cut(s) 444, 1574
HpyCH4III ACNGT 4 cut(s) 376, 1114, 1205, 1267
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 8 cut(s) 9, 93, 230, 929, 1043, 1369, 1424, 1556
HpyF10VI GCNNNNNNNGC 2 cut(s) 1049, 1489
HpyF3I CTNAG 2 cut(s) 556, 755
HpySE526I ACGT 1 cut(s) 120
Hsp92I GRCGYC 1 cut(s) 69
HspAI GCGC 2 cut(s) 708, 1259
Kpn2I TCCGGA 1 cut(s) 143
Kzo9I GATC 3 cut(s) 769, 933, 1130
LmnI GCTCC 1 cut(s) 989
Lsp1109I GCAGC 4 cut(s) 874, 1040, 1318, 1531
LweI GCATC 3 cut(s) 102, 217, 1378
MabI ACCWGGT 2 cut(s) 1102, 1446
MaeI CTAG 2 cut(s) 621, 686
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 6 cut(s) 278, 295, 347, 487, 1410, 1539
MalI GATC 3 cut(s) 771, 935, 1132
MboI GATC 3 cut(s) 769, 933, 1130
MfeI CAATTG 1 cut(s) 783
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 8 cut(s) 354, 783, 907, 971, 1186, 1220, 1321, 1548
MlyI GAGTC 3 cut(s) 253, 431, 1432
MmeI TCCRAC 3 cut(s) 1108, 1133, 1219
MroI TCCGGA 1 cut(s) 143
MroXI GAANNNNTTC 1 cut(s) 1139
MseI TTAA 4 cut(s) 62, 953, 975, 1167
MslI CAYNNNNRTG 2 cut(s) 1067, 1483
MspA1I CMGCKG 1 cut(s) 887
MspI CCGG 2 cut(s) 144, 317
MspR9I CCNGG 3 cut(s) 987, 1104, 1448
MunI CAATTG 1 cut(s) 783
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 3 cut(s) 987, 1104, 1448
MwoI GCNNNNNNNGC 2 cut(s) 1049, 1489
NdeII GATC 3 cut(s) 769, 933, 1130
NheI GCTAGC 1 cut(s) 620
NlaIV GGNNCC 3 cut(s) 37, 865, 1213
NmuCI GTSAC 4 cut(s) 278, 347, 1410, 1539
NspI RCATGY 1 cut(s) 1428
PagI TCATGA 1 cut(s) 940
PctI GAATGC 1 cut(s) 556
PdmI GAANNNNTTC 1 cut(s) 1139
PfeI GAWTC 7 cut(s) 147, 268, 538, 608, 880, 944, 1135
PflFI GACNNNGTC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 1127
PkrI GCNGC 4 cut(s) 889, 1030, 1333, 1521
PleI GAGTC 3 cut(s) 253, 430, 1432
PpsI GAGTC 3 cut(s) 253, 430, 1432
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 3 cut(s) 985, 1102, 1446
PspEI GGTNACC 1 cut(s) 278
PspGI CCWGG 3 cut(s) 985, 1102, 1446
PspN4I GGNNCC 3 cut(s) 37, 865, 1213
PspPI GGNCC 4 cut(s) 35, 1106, 1301, 1450
PsyI GACNNNGTC 1 cut(s) 284
PvuII CAGCTG 1 cut(s) 887
RsaI GTAC 4 cut(s) 373, 1153, 1314, 1399
RsaNI GTAC 4 cut(s) 372, 1152, 1313, 1398
RseI CAYNNNNRTG 2 cut(s) 1067, 1483
SacI GAGCTC 1 cut(s) 24
SaqAI TTAA 4 cut(s) 62, 953, 975, 1167
SatI GCNGC 4 cut(s) 888, 1029, 1332, 1520
Sau3AI GATC 3 cut(s) 769, 933, 1130
Sau96I GGNCC 4 cut(s) 35, 1106, 1301, 1450
SchI GAGTC 3 cut(s) 253, 431, 1432
ScrFI CCNGG 3 cut(s) 987, 1104, 1448
SduI GDGCHC 1 cut(s) 24
SexAI ACCWGGT 2 cut(s) 1102, 1446
SfaNI GCATC 3 cut(s) 102, 217, 1378
SinI GGWCC 4 cut(s) 35, 1106, 1301, 1450
SmiMI CAYNNNNRTG 2 cut(s) 1067, 1483
SmlI CTYRAG 4 cut(s) 654, 898, 1326, 1380
SmoI CTYRAG 4 cut(s) 654, 898, 1326, 1380
Sse9I AATT 8 cut(s) 354, 783, 907, 971, 1186, 1220, 1321, 1548
SsiI CCGC 2 cut(s) 368, 1496
SspMI CTAG 2 cut(s) 621, 686
SstI GAGCTC 1 cut(s) 24
StyD4I CCNGG 3 cut(s) 985, 1102, 1446
StyI CCWWGG 1 cut(s) 1468
TaaI ACNGT 4 cut(s) 376, 1114, 1205, 1267
TaiI ACGT 1 cut(s) 123
TaqI TCGA 3 cut(s) 425, 790, 1133
TaqII GACCGA 1 cut(s) 1318
TasI AATT 8 cut(s) 354, 783, 907, 971, 1186, 1220, 1321, 1548
TatI WGTACW 1 cut(s) 1312
TfiI GAWTC 7 cut(s) 147, 268, 538, 608, 880, 944, 1135
Tru1I TTAA 4 cut(s) 62, 953, 975, 1167
Tru9I TTAA 4 cut(s) 62, 953, 975, 1167
TscAI CASTG 4 cut(s) 163, 540, 1050, 1059
TseFI GTSAC 4 cut(s) 278, 347, 1410, 1539
TseI GCWGC 4 cut(s) 887, 1028, 1331, 1519
Tsp45I GTSAC 4 cut(s) 278, 347, 1410, 1539
TspDTI ATGAA 4 cut(s) 48, 641, 683, 1492
TspGWI ACGGA 1 cut(s) 1557
TspRI CASTG 4 cut(s) 163, 540, 1050, 1059
Tth111I GACNNNGTC 1 cut(s) 284
Van91I CCANNNNNTGG 1 cut(s) 1127
VpaK11BI GGWCC 4 cut(s) 35, 1106, 1301, 1450
XapI RAATTY 2 cut(s) 971, 1321
XceI RCATGY 1 cut(s) 1428
XcmI CCANNNNNNNNNTGG 1 cut(s) 1124
XmnI GAANNNNTTC 1 cut(s) 1139
XspI CTAG 2 cut(s) 621, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.