Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001651

Physical Location & Seq

Genomic Coordinates Reverse (-)

33609456 .. 33613140

Gene Structure 3685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00192420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGAGTGAGTTTCACTGTTTGTGGTTTCGGAATGTTAAGGACCACCAAGAGTTTACCAATGCAGAAAAGATGAGCTCGAAGGACAGGCAGCTCGCTGCACAGCTTATTCGAGAGGGCACGCTCTCTACAACAAAGGGGGCAGCGGAGCAAAAGCAGAAGAGGAGGAGGCGAGCAGAAGTAGAGGAGGCAGCAGAAAAGGCTAGAGCGAAGACACACAGGAAATACATCAAGAGAGAGGCAAAACTTGCTGCAGAGGAGAGAGGAAGCGTTTCAACAATTTTGATCGAAGCAAGGAGCCAACAAGCAAACAACACAAAGGTTGGGGCCTCTCTGATCCACCCATGCAACTTTCTTTTTCTGTGCAGCATCTCTTTTACCTGTGTCACCATGGAGCTATGGAGGTCCCCAGAGCGGTCGCAATCTCGTTTACGATACATGTGTATCAACGGGTGTATGACCAATCCGGTGAAATTGTTTAAGCCTTGTAGCAGTAAACAGAGTGTCAACGGAGCTTCAACGAAAACAAGCTCCATCAAAAGATCTTGCCTACGCCTGCGTCGGCACCTGCACCACACACAAAGGCTCTGTCAAATGCGTGCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

201

Amino Acids

23.09

Weight (kDa)

10.24

Isoelectric Point (pI)

68.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26990 AT5G54920 AT5G54920
fragaria_vesca	FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540
malus_domestica	MD03G1202100.v1.1
prunus_persica	Prupe.4G211900_v2.0.a1 Prupe.4G211900_v2.0.a1 Prupe.4G211900_v2.0.a1
pyrus_communis	pycom03g15350
rosa_chinensis	RchiOBHm_Chr3g0473871 RchiOBHm_Chr5g0039281 RchiOBHm_Chr6g0266511
rosa_laevigata	RLG00000014150 RLG00000033903
rosa_multiflora	Rmu_sc0002080.1_g000048 Rmu_sc0002833.1_g000019 Rmu_sc0002911.1_g000009 Rmu_sc0006382.1_g000007 Rmu_ssc0000410.1_g000049
rosa_roxburghii	Rroxscaffold_1G00040480 Rroxscaffold_1G00041860 Rroxscaffold_4G00326800 Rroxscaffold_7G00192420
rosa_rugosa	Rorug05G0086200 Rorug05G0177600.1 Rorug05G0177700 Rorug05G0177700 Rorug06G0099600
rosa_samantha	Rh1BG106300 Rh2AG262700 Rh2CG308300 Rh2CG337800 Rh3AG070700 Rh3BG073200 Rh3CG071700 Rh4CG053500 Rh5AG264100 Rh5BG269200 Rh5CG302100 Rh5DG276800 Rh6BG146700 Rh6BG146800
rosa_wichuraiana	Rw5G024770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	573
Acc36I	ACCTGC	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	561
AccBSI	CCGCTC	1 cut(s)	412
AciI	CCGC	2 cut(s)	143, 412
AclWI	GGATC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	411
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	273, 516
AluBI	AGCT	7 cut(s)	75, 91, 103, 394, 512, 528, 603
AluI	AGCT	7 cut(s)	75, 91, 103, 394, 512, 528, 603
Alw21I	GWGCWC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	328
AoxI	GGCC	1 cut(s)	324
ApeKI	GCWGC	6 cut(s)	88, 95, 140, 188, 248, 363
ArsI	GACNNNNNNTTYG	2 cut(s)	571, 603
Asp700I	GAANNNNTTC	1 cut(s)	268
AspS9I	GGNCC	3 cut(s)	40, 324, 402
AsuHPI	GGTGA	2 cut(s)	376, 478
AvaII	GGWCC	2 cut(s)	40, 402
BaeGI	GKGCMC	1 cut(s)	119
BaeI	ACNNNNGTAYC	4 cut(s)	424, 424, 457, 457
BanI	GGYRCC	1 cut(s)	561
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	6 cut(s)	82, 100, 152, 200, 235, 375
BccI	CCATC	1 cut(s)	539
BfaI	CTAG	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	249
BfuAI	ACCTGC	1 cut(s)	573
BglII	AGATCT	1 cut(s)	539
BisI	GCNGC	6 cut(s)	89, 96, 141, 189, 249, 364
BlsI	GCNGC	6 cut(s)	90, 97, 142, 190, 250, 365
Bme18I	GGWCC	2 cut(s)	40, 402
BmgT120I	GGNCC	3 cut(s)	40, 324, 402
BmiI	GGNNCC	4 cut(s)	296, 325, 404, 563
BmsI	GCATC	1 cut(s)	375
BpiI	GAAGAC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	387
BsaWI	WCCGGW	1 cut(s)	463
Bsc4I	CCNNNNNNNGG	1 cut(s)	411
BseDI	CCNNGG	1 cut(s)	387
BseLI	CCNNNNNNNGG	1 cut(s)	411
BseRI	GAGGAG	4 cut(s)	175, 178, 197, 269
BseSI	GKGCMC	1 cut(s)	119
BseXI	GCAGC	6 cut(s)	82, 100, 152, 200, 235, 375
BsgI	GTGCAG	3 cut(s)	81, 382, 551
Bsh1285I	CGRYCG	1 cut(s)	416
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	561
BsiEI	CGRYCG	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	464
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	388
BsnI	GGCC	1 cut(s)	326
Bsp1286I	GDGCHC	2 cut(s)	77, 119
Bsp143I	GATC	3 cut(s)	282, 333, 539
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	2 cut(s)	143, 412
BspANI	GGCC	1 cut(s)	326
BspLI	GGNNCC	4 cut(s)	296, 325, 404, 563
BspMAI	CTGCAG	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	573
BspPI	GGATC	1 cut(s)	328
BspT107I	GGYRCC	1 cut(s)	561
BsrBI	CCGCTC	1 cut(s)	412
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	3 cut(s)	282, 333, 539
BssT1I	CCWWGG	1 cut(s)	387
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	152
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	6 cut(s)	93, 119, 171, 554, 597, 601
BstDSI	CCRYGG	1 cut(s)	387
BstKTI	GATC	3 cut(s)	285, 336, 542
BstMBI	GATC	3 cut(s)	282, 333, 539
BstMCI	CGRYCG	1 cut(s)	416
BstMWI	GCNNNNNNNGC	2 cut(s)	197, 245
BstNSI	RCATGY	1 cut(s)	439
BstSFI	CTRYAG	1 cut(s)	249
BstSLI	GKGCMC	1 cut(s)	119
BstV1I	GCAGC	6 cut(s)	82, 100, 152, 200, 235, 375
BstV2I	GAAGAC	1 cut(s)	215
BstX2I	RGATCY	1 cut(s)	539
BstYI	RGATCY	1 cut(s)	539
BsuRI	GGCC	1 cut(s)	326
BtgI	CCRYGG	1 cut(s)	387
BtsIMutI	CAGTG	1 cut(s)	13
BveI	ACCTGC	1 cut(s)	573
Cac8I	GCNNGC	6 cut(s)	93, 119, 171, 554, 597, 601
Cfr13I	GGNCC	3 cut(s)	40, 324, 402
CseI	GACGC	1 cut(s)	545
CviAII	CATG	3 cut(s)	342, 388, 436
DpnI	GATC	3 cut(s)	284, 335, 541
DpnII	GATC	3 cut(s)	282, 333, 539
Eam1104I	CTCTTC	1 cut(s)	152
EarI	CTCTTC	1 cut(s)	152
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	40, 402
Eco53kI	GAGCTC	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	75
EcoO109I	RGGNCCY	2 cut(s)	324, 402
EcoT14I	CCWWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	3 cut(s)	345, 391, 439
FaiI	YATR	5 cut(s)	343, 389, 397, 437, 455
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	3 cut(s)	341, 387, 435
Fnu4HI	GCNGC	6 cut(s)	89, 96, 141, 189, 249, 364
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	6 cut(s)	89, 96, 141, 189, 249, 364
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	6 cut(s)	89, 96, 141, 189, 249, 364
HaeIII	GGCC	1 cut(s)	326
HapII	CCGG	1 cut(s)	464
HgaI	GACGC	1 cut(s)	545
Hin1II	CATG	3 cut(s)	345, 391, 439
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HpaII	CCGG	1 cut(s)	464
HphI	GGTGA	2 cut(s)	376, 478
Hpy166II	GTNNAC	4 cut(s)	54, 428, 494, 505
Hpy188I	TCNGA	2 cut(s)	30, 333
Hpy188III	TCNNGA	2 cut(s)	110, 229
Hpy8I	GTNNAC	4 cut(s)	54, 428, 494, 505
Hpy99I	CGWCG	1 cut(s)	561
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4V	TGCA	7 cut(s)	62, 98, 251, 345, 363, 568, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	197, 245
Hsp92II	CATG	3 cut(s)	345, 391, 439
Kzo9I	GATC	3 cut(s)	282, 333, 539
LmnI	GCTCC	5 cut(s)	145, 294, 391, 509, 533
LpnPI	CCDG	7 cut(s)	70, 202, 391, 420, 477, 566, 578
Lsp1109I	GCAGC	6 cut(s)	82, 100, 152, 200, 235, 375
LweI	GCATC	1 cut(s)	375
MaeI	CTAG	1 cut(s)	201
MaeIII	GTNAC	1 cut(s)	382
MalI	GATC	3 cut(s)	284, 335, 541
MbiI	CCGCTC	1 cut(s)	412
MboI	GATC	3 cut(s)	282, 333, 539
MboII	GAAGA	2 cut(s)	169, 220
MflI	RGATCY	1 cut(s)	539
MhlI	GDGCHC	2 cut(s)	77, 119
MluCI	AATT	2 cut(s)	276, 470
MroXI	GAANNNNTTC	1 cut(s)	268
MseI	TTAA	2 cut(s)	36, 477
MspA1I	CMGCKG	1 cut(s)	143
MspI	CCGG	1 cut(s)	464
MwoI	GCNNNNNNNGC	2 cut(s)	197, 245
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	3 cut(s)	282, 333, 539
NlaIII	CATG	3 cut(s)	345, 391, 439
NlaIV	GGNNCC	4 cut(s)	296, 325, 404, 563
NmuCI	GTSAC	1 cut(s)	382
NspI	RCATGY	1 cut(s)	439
PaqCI	CACCTGC	1 cut(s)	573
PciI	ACATGT	1 cut(s)	435
PdmI	GAANNNNTTC	1 cut(s)	268
PkrI	GCNGC	6 cut(s)	90, 97, 142, 190, 250, 365
PpuMI	RGGWCCY	1 cut(s)	402
PscI	ACATGT	1 cut(s)	435
Psp124BI	GAGCTC	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	402
PspN4I	GGNNCC	4 cut(s)	296, 325, 404, 563
PspPI	GGNCC	3 cut(s)	40, 324, 402
PspPPI	RGGWCCY	1 cut(s)	402
PstI	CTGCAG	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	539
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	36, 477
SatI	GCNGC	6 cut(s)	89, 96, 141, 189, 249, 364
Sau3AI	GATC	3 cut(s)	282, 333, 539
Sau96I	GGNCC	3 cut(s)	40, 324, 402
SduI	GDGCHC	2 cut(s)	77, 119
SfaNI	GCATC	1 cut(s)	375
SfcI	CTRYAG	1 cut(s)	249
SinI	GGWCC	2 cut(s)	40, 402
Sse9I	AATT	2 cut(s)	276, 470
SsiI	CCGC	2 cut(s)	143, 412
SspMI	CTAG	1 cut(s)	201
SstI	GAGCTC	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	77, 109, 285
TasI	AATT	2 cut(s)	276, 470
Tru1I	TTAA	2 cut(s)	36, 477
Tru9I	TTAA	2 cut(s)	36, 477
TscAI	CASTG	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	382
TseI	GCWGC	6 cut(s)	88, 95, 140, 188, 248, 363
Tsp45I	GTSAC	1 cut(s)	382
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	1 cut(s)	20
VpaK11BI	GGWCC	2 cut(s)	40, 402
XceI	RCATGY	1 cut(s)	439
XmnI	GAANNNNTTC	1 cut(s)	268
XspI	CTAG	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.