Rh2CG308300

Ataxin 2 SM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001651
Physical Location & Seq
Reverse (-)
38414027 .. 38417164
3138 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG308300.1

Sequence Viewer

Length: 807 bp
ATGGAGGGAGTTTTACTTCCAGCTGATGGTGTTGCTGGAAATATGTCTGGTGACAGAACTGAAGCTGTTACGAGTACTGTTTCTTCTTATGAGTGTTCAAAGAATGGTGTGAAGAAGTCAAGTGAGTCTGCCATAAATAAGAAGGGTGGAAGGCTGCTAATGCAAAATGGGAATAGCTTTCATGGTGTTACACCCACAAGGGCTGGCAAGGAACATGGAGGGAGGAATATGCCACTGAATCATATTGAGAATGCCTCAGAACTTGAAAATAAGAGAAGTGATGATGTAAACTTATCAGAGGCTGACAAAGTCCACGATACAAAGATGACATCCAAGCTATTTCCTTTCAGAGTATCTTATGATCCTTCCGCTGTCATTGTTCAACGAGACATTCAGTGCTGTGAGAGGACAACTTCAGAATACACTTCCTCTAATGTTGTTTCTTCAGGTTCCTCAACTTTGTTGAATCCATCTGCTAATGTCTCAAGTCGTAATTCAGAAACAACATCAACTGAAATGATCCCTCATGGTTCAGAGTTAAATAAAAATGGCAAGGAATTTAAGCTCAACCCAGGAGCAAAAGTATTCTCACCATCTTTTACAAAGCCCATAGCAGCCACCTCTCCGGCAGTGCCACCAGTGGCAAGCATGGGTTTTATACCAACCAACTGCCCTGTGGTACCTGGTCCTGCCGTCCAGCCAGAAGTTGGATCGAATCCAACTATGTACTATGCCATTCTGGCCTGTGTACATTTCTATGACCTGGTGATATTGATGAGCGCGAGATTGTTACCCCTGATGTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

268

Amino Acids

28.6

Weight (kDa)

7.0

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 679
AccB1I GGYRCC 1 cut(s) 679
AccB7I CCANNNNNTGG 2 cut(s) 26, 707
AccII CGCG 1 cut(s) 782
AciI CCGC 1 cut(s) 369
AclWI GGATC 3 cut(s) 356, 514, 718
AcsI RAATTY 1 cut(s) 557
AcuI CTGAAG 3 cut(s) 81, 399, 429
AfaI GTAC 4 cut(s) 76, 681, 728, 750
AfiI CCNNNNNNNGG 2 cut(s) 26, 707
AgsI TTSAA 4 cut(s) 99, 266, 383, 466
AjnI CCWGG 3 cut(s) 571, 682, 762
AluBI AGCT 5 cut(s) 23, 65, 177, 337, 565
AluI AGCT 5 cut(s) 23, 65, 177, 337, 565
Alw26I GTCTC 2 cut(s) 381, 487
AlwI GGATC 3 cut(s) 356, 514, 718
AlwNI CAGNNNCTG 1 cut(s) 302
AoxI GGCC 1 cut(s) 741
ApeKI GCWGC 2 cut(s) 154, 614
ApoI RAATTY 1 cut(s) 557
Asp718I GGTACC 1 cut(s) 679
AspLEI GCGC 1 cut(s) 782
AspS9I GGNCC 1 cut(s) 686
AsuHPI GGTGA 3 cut(s) 62, 582, 778
AvaII GGWCC 1 cut(s) 686
BanI GGYRCC 1 cut(s) 679
BarI GAAGNNNNNNTAC 2 cut(s) 67, 99
BbvI GCAGC 2 cut(s) 141, 626
BccI CCATC 3 cut(s) 20, 478, 601
BceAI ACGGC 1 cut(s) 677
BciT130I CCWGG 3 cut(s) 573, 684, 764
BcoDI GTCTC 2 cut(s) 381, 487
BglI GCCNNNNNGGC 1 cut(s) 740
BisI GCNGC 2 cut(s) 155, 615
BlsI GCNGC 2 cut(s) 156, 616
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 3 cut(s) 573, 684, 764
Bme18I GGWCC 1 cut(s) 686
BmgT120I GGNCC 1 cut(s) 686
BmiI GGNNCC 2 cut(s) 451, 681
BmrFI CCNGG 3 cut(s) 573, 684, 764
BplI GAGNNNNNCTC 2 cut(s) 239, 271
BpuEI CTTGAG 1 cut(s) 469
BsaJI CCNNGG 1 cut(s) 571
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 707
Bse1I ACTGG 1 cut(s) 638
BseBI CCWGG 3 cut(s) 573, 684, 764
BseDI CCNNGG 1 cut(s) 571
BseGI GGATG 1 cut(s) 329
BseLI CCNNNNNNNGG 2 cut(s) 26, 707
BseMII CTCAG 1 cut(s) 270
BseNI ACTGG 1 cut(s) 638
BseXI GCAGC 2 cut(s) 141, 626
Bsh1236I CGCG 1 cut(s) 782
BshFI GGCC 1 cut(s) 743
BshNI GGYRCC 1 cut(s) 679
BsiSI CCGG 1 cut(s) 626
BslI CCNNNNNNNGG 2 cut(s) 26, 707
BsmAI GTCTC 2 cut(s) 381, 487
BsmI GAATGC 1 cut(s) 256
BsnI GGCC 1 cut(s) 743
Bsp1407I TGTACA 1 cut(s) 748
Bsp143I GATC 3 cut(s) 361, 519, 710
BspACI CCGC 1 cut(s) 369
BspANI GGCC 1 cut(s) 743
BspCNI CTCAG 1 cut(s) 269
BspFNI CGCG 1 cut(s) 782
BspHI TCATGA 1 cut(s) 803
BspLI GGNNCC 2 cut(s) 451, 681
BspPI GGATC 3 cut(s) 356, 514, 718
BspT107I GGYRCC 1 cut(s) 679
BsrGI TGTACA 1 cut(s) 748
BsrI ACTGG 1 cut(s) 638
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 3 cut(s) 361, 519, 710
Bst2UI CCWGG 3 cut(s) 573, 684, 764
Bst4CI ACNGT 1 cut(s) 79
BstAUI TGTACA 1 cut(s) 748
BstC8I GCNNGC 2 cut(s) 205, 646
BstDEI CTNAG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 329
BstFNI CGCG 1 cut(s) 782
BstHHI GCGC 1 cut(s) 782
BstKTI GATC 3 cut(s) 364, 522, 713
BstMAI GTCTC 2 cut(s) 381, 487
BstMBI GATC 3 cut(s) 361, 519, 710
BstMWI GCNNNNNNNGC 2 cut(s) 160, 740
BstNI CCWGG 3 cut(s) 573, 684, 764
BstSCI CCNGG 3 cut(s) 571, 682, 762
BstUI CGCG 1 cut(s) 782
BstV1I GCAGC 2 cut(s) 141, 626
BsuRI GGCC 1 cut(s) 743
BtsCI GGATG 1 cut(s) 329
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 4 cut(s) 233, 401, 636, 645
Cac8I GCNNGC 2 cut(s) 205, 646
CaiI CAGNNNCTG 1 cut(s) 302
CciI TCATGA 1 cut(s) 803
CfoI GCGC 1 cut(s) 782
Cfr13I GGNCC 1 cut(s) 686
CsiI ACCWGGT 2 cut(s) 682, 762
Csp6I GTAC 4 cut(s) 75, 680, 727, 749
CviAII CATG 5 cut(s) 182, 215, 527, 649, 804
CviQI GTAC 4 cut(s) 75, 680, 727, 749
DdeI CTNAG 1 cut(s) 256
DpnI GATC 3 cut(s) 363, 521, 712
DpnII GATC 3 cut(s) 361, 519, 710
Eco47I GGWCC 1 cut(s) 686
Eco57I CTGAAG 3 cut(s) 81, 399, 429
EcoRII CCWGG 3 cut(s) 571, 682, 762
FaeI CATG 5 cut(s) 185, 218, 530, 652, 807
FatI CATG 5 cut(s) 181, 214, 526, 648, 803
Fnu4HI GCNGC 2 cut(s) 155, 615
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 2 cut(s) 155, 615
GlaI GCGC 1 cut(s) 781
GluI GCNGC 2 cut(s) 155, 615
HaeIII GGCC 1 cut(s) 743
HapII CCGG 1 cut(s) 626
HhaI GCGC 1 cut(s) 782
Hin1II CATG 5 cut(s) 185, 218, 530, 652, 807
Hin6I GCGC 1 cut(s) 780
HinP1I GCGC 1 cut(s) 780
HinfI GANTC 4 cut(s) 125, 238, 466, 715
HpaII CCGG 1 cut(s) 626
HphI GGTGA 3 cut(s) 62, 582, 778
Hpy166II GTNNAC 3 cut(s) 289, 313, 749
Hpy188I TCNGA 6 cut(s) 259, 298, 350, 418, 499, 535
Hpy188III TCNNGA 1 cut(s) 804
Hpy8I GTNNAC 3 cut(s) 289, 313, 749
HpyAV CCTTC 3 cut(s) 136, 144, 375
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 2 cut(s) 160, 740
HpyF3I CTNAG 1 cut(s) 256
Hsp92II CATG 5 cut(s) 185, 218, 530, 652, 807
HspAI GCGC 1 cut(s) 780
KpnI GGTACC 1 cut(s) 683
Kzo9I GATC 3 cut(s) 361, 519, 710
LmnI GCTCC 1 cut(s) 575
Lsp1109I GCAGC 2 cut(s) 141, 626
MabI ACCWGGT 2 cut(s) 682, 762
MaeIII GTNAC 4 cut(s) 50, 67, 187, 789
MalI GATC 3 cut(s) 363, 521, 712
MboI GATC 3 cut(s) 361, 519, 710
MboII GAAGA 3 cut(s) 75, 124, 435
MluCI AATT 2 cut(s) 493, 557
MlyI GAGTC 1 cut(s) 134
MmeI TCCRAC 2 cut(s) 688, 743
MnlI CCTC 9 cut(s) 212, 216, 265, 292, 399, 439, 463, 534, 631
MseI TTAA 2 cut(s) 539, 561
MslI CAYNNNNRTG 1 cut(s) 756
MspA1I CMGCKG 2 cut(s) 23, 371
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 3 cut(s) 573, 684, 764
Mva1269I GAATGC 1 cut(s) 256
MvaI CCWGG 3 cut(s) 573, 684, 764
MvnI CGCG 1 cut(s) 782
MwoI GCNNNNNNNGC 2 cut(s) 160, 740
NdeII GATC 3 cut(s) 361, 519, 710
NlaIII CATG 5 cut(s) 185, 218, 530, 652, 807
NlaIV GGNNCC 2 cut(s) 451, 681
NmuCI GTSAC 1 cut(s) 50
PagI TCATGA 1 cut(s) 803
PctI GAATGC 1 cut(s) 256
PfeI GAWTC 3 cut(s) 238, 466, 715
PflFI GACNNNGTC 1 cut(s) 308
PflMI CCANNNNNTGG 2 cut(s) 26, 707
PkrI GCNGC 2 cut(s) 156, 616
PleI GAGTC 1 cut(s) 133
PpsI GAGTC 1 cut(s) 133
Psp6I CCWGG 3 cut(s) 571, 682, 762
PspGI CCWGG 3 cut(s) 571, 682, 762
PspN4I GGNNCC 2 cut(s) 451, 681
PspPI GGNCC 1 cut(s) 686
PstNI CAGNNNCTG 1 cut(s) 302
PsyI GACNNNGTC 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 23
RsaI GTAC 4 cut(s) 76, 681, 728, 750
RsaNI GTAC 4 cut(s) 75, 680, 727, 749
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 2 cut(s) 539, 561
SatI GCNGC 2 cut(s) 155, 615
Sau3AI GATC 3 cut(s) 361, 519, 710
Sau96I GGNCC 1 cut(s) 686
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 1 cut(s) 134
ScrFI CCNGG 3 cut(s) 573, 684, 764
SetI ASST 9 cut(s) 25, 67, 179, 339, 451, 567, 623, 685, 765
SexAI ACCWGGT 2 cut(s) 682, 762
SinI GGWCC 1 cut(s) 686
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
Sse9I AATT 2 cut(s) 493, 557
SsiI CCGC 1 cut(s) 369
StyD4I CCNGG 3 cut(s) 571, 682, 762
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 1 cut(s) 713
TasI AATT 2 cut(s) 493, 557
TatI WGTACW 3 cut(s) 74, 726, 748
TfiI GAWTC 3 cut(s) 238, 466, 715
Tru1I TTAA 2 cut(s) 539, 561
Tru9I TTAA 2 cut(s) 539, 561
TscAI CASTG 4 cut(s) 240, 401, 636, 645
TseFI GTSAC 1 cut(s) 50
TseI GCWGC 2 cut(s) 154, 614
Tsp45I GTSAC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 170
TspRI CASTG 4 cut(s) 240, 401, 636, 645
Tth111I GACNNNGTC 1 cut(s) 308
Van91I CCANNNNNTGG 2 cut(s) 26, 707
VpaK11BI GGWCC 1 cut(s) 686
XapI RAATTY 1 cut(s) 557
XcmI CCANNNNNNNNNTGG 2 cut(s) 673, 704
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.