Rmu_sc0002080.1_g000048

Ataxin 2 SM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002080.1
OG0001651
Physical Location & Seq
Reverse (-)
212246 .. 212565
320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002080.1_g000048.1.cds

Sequence Viewer

Length: 228 bp
atgactaaaaagggaaaatctgatgcgaatgtagcaaatggggagttgatagatactcttgtgattctttttggtgaccttgtccaagttgttacaaagggagttttacttccagctgatggtgttgctggaaatatgtctggtgacagaattgaagctgttatggatactgtttcttcttatgagtgttcaaagaatggtgcgaagaagtcaagtgatctgccataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

75

Amino Acids

7.77

Weight (kDa)

4.81

Isoelectric Point (pI)

22.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 2 cut(s) 155, 192
AluBI AGCT 2 cut(s) 116, 158
AluI AGCT 2 cut(s) 116, 158
AsuHPI GGTGA 2 cut(s) 86, 155
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BccI CCATC 1 cut(s) 113
BciVI GTATCC 1 cut(s) 160
BfuI GTATCC 1 cut(s) 160
BmsI GCATC 1 cut(s) 13
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 119
Bsp143I GATC 1 cut(s) 217
BssMI GATC 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 172
BstEII GGTNACC 1 cut(s) 74
BstKTI GATC 1 cut(s) 220
BstMBI GATC 1 cut(s) 217
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstPI GGTNACC 1 cut(s) 74
BsuI GTATCC 1 cut(s) 160
CviJI RGCY 2 cut(s) 116, 158
CviKI_1 RGCY 2 cut(s) 116, 158
DpnI GATC 1 cut(s) 219
DpnII GATC 1 cut(s) 217
Eco91I GGTNACC 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 74
FaiI YATR 4 cut(s) 137, 164, 183, 226
HinfI GANTC 1 cut(s) 64
HphI GGTGA 2 cut(s) 86, 155
Hpy188I TCNGA 1 cut(s) 22
HpyCH4III ACNGT 1 cut(s) 172
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 217
LpnPI CCDG 3 cut(s) 114, 126, 126
LweI GCATC 1 cut(s) 13
MaeIII GTNAC 3 cut(s) 74, 91, 143
MalI GATC 1 cut(s) 219
MboI GATC 1 cut(s) 217
MboII GAAGA 2 cut(s) 168, 217
MluCI AATT 1 cut(s) 150
MspA1I CMGCKG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 1 cut(s) 217
NmuCI GTSAC 2 cut(s) 74, 143
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 119
PspEI GGTNACC 1 cut(s) 74
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 116
Sau3AI GATC 1 cut(s) 217
SetI ASST 3 cut(s) 81, 118, 160
SfaNI GCATC 1 cut(s) 13
SgeI CNNG 6 cut(s) 71, 92, 98, 125, 141, 153
Sse9I AATT 1 cut(s) 150
TaaI ACNGT 1 cut(s) 172
TasI AATT 1 cut(s) 150
TfiI GAWTC 1 cut(s) 64
TseFI GTSAC 2 cut(s) 74, 143
Tsp45I GTSAC 2 cut(s) 74, 143
Tth111I GACNNNGTC 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.