Prupe.4G211900_v2.0.a1

Ataxin 2 SM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0001651
Physical Location & Seq
Forward (+)
13212474 .. 13218632
6159 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G211900.2

Sequence Viewer

Length: 1464 bp
ATGGGTTGCAGAAACAGAGAGTTCACAGACGACGAGACTGTCTCTTCTTCTTCATTAAGTGAGGCCTTGCTTTTTGCCACCATGTGCATCATTGGTCTCCCAGTCGATGTTCACGTCAAGGACGGCTCTGTCTATTCTGGAATATTCTACACCGCCTCTGTGGAGAACGAATACGGTATTGTTCTGAAGAAAGCAAGGATGACTAAAAAGGGAAAGAGTGATGCTAATGTAGGAAATGGGACATTGATTGACACTCTAGTAATTCTCTCAGGTGACCTTGTTCAAGTTGTTGCTAAGGGAGTTTTGCTTCCAGCGGCTGATATTGCTGGAAATATGGCTGGTGACGAAACTGAAGCTGTTACGGGTACTGTTCCTTCTGATGTTTGTATAAAGAATGATGCGAAGAAGCCAATTGAGTCTGCCATAAATAAGAAGAAATTGAACGGTGTCAGGGGCGCAATGCAAAATGGCAATGGACTTGCTCATGGCGTCACCTTCACAGGAGCTGGAAAGGAACATGAAGGGAGGAATTTGCCACTGAAACATGGTGGGAATACCATGGAAGTTGAACATGGGAAAGGTGAAGGGATGAACTTATCAGAGGCTGATAAAGTTAATGATAAAAAGATGACATCAAAGCGATTGCCTTCCGGAGTATCTTGTGATCCTGTTACTGTAATTGTTAATTCAGACAATCAATGCTGTGAAAGGACAACTTCAGCAGACATTTCTTCTGATGTTGTTTCTTCAGGTGTCTCAACTTCATTTAATCCAGCTGCAGATGCTTCTTGTCGACGTTTGGTGGCAACATCAACTGAAATGGTCCATCCTCAGGGTCCAGAATTTAATAGAAGTGCCAAGGAATTTAAGCTCAACCCAGGAGCAAAAACATTCTCTCCATCTTTTACAAAGCCCATAACATCAACCCCTCCTTCGGTGCCAACAGTGGTGAGCATGGGTTATATACCAAACAACTCCCCCATGGTAGCTGTTCCTGCTGCTCAGCCAGAAGTCGGATCAAATCCTTTCCCATCTCGTTCATCTGTGCCTGTTAAGGTGGTCCAGTACAATAATTTCACCAATGGACATGGTGGCAGTGGTTCTCAATTTTCACAACCTATTGTTGGACACGTGGGAAGCAGGGTGCAGACGCTTAGGTATCCTGTTCAGGCTGGACCTACCTATGTGCATCCAAATTCTCAAGCTGTTATGGTTGGACGGTTCGGGCAGGTTGTATACATGCATCCAGTTTCTCAAGATTTGGTTCAGGGTGCAACGGCTATGTCACCACTGCCTGCTCGTCCTGTGTTGACCCCACATCAGGTCCAGTTTCCGAAGCACCAAGGACCTGCAGCAGCCCAAGCTTTTCAGCTGTGTGCGCCTCCGCCGTTCATGGCTACTGGACAGCAGCCTTTCCCCATTGCCAAGACACATCCCCTTTTTGCAACCTCCCTTCCCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

488

Amino Acids

51.29

Weight (kDa)

8.51

Isoelectric Point (pI)

35.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 38, 128
Acc36I ACCTGC 2 cut(s) 1219, 1357
AccB1I GGYRCC 1 cut(s) 937
AccI GTMKAC 2 cut(s) 793, 1236
AccIII TCCGGA 1 cut(s) 650
AciI CCGC 3 cut(s) 153, 314, 1385
AclWI GGATC 2 cut(s) 659, 1024
AcsI RAATTY 4 cut(s) 529, 842, 863, 1195
AcuI CTGAAG 4 cut(s) 206, 372, 702, 732
AcvI CACGTG 1 cut(s) 1132
AcyI GRCGYC 1 cut(s) 489
AdeI CACNNNGTG 1 cut(s) 84
AfaI GTAC 2 cut(s) 367, 1067
AfiI CCNNNNNNNGG 5 cut(s) 832, 934, 1013, 1124, 1321
AflIII ACRYGT 1 cut(s) 1129
AgsI TTSAA 3 cut(s) 284, 442, 569
AjiI CACGTC 1 cut(s) 115
AjnI CCWGG 1 cut(s) 877
AluBI AGCT 8 cut(s) 356, 506, 776, 871, 989, 1205, 1364, 1372
AluI AGCT 8 cut(s) 356, 506, 776, 871, 989, 1205, 1364, 1372
Alw26I GTCTC 4 cut(s) 29, 46, 101, 760
AlwI GGATC 2 cut(s) 659, 1024
AlwNI CAGNNNCTG 3 cut(s) 317, 506, 605
Aor13HI TCCGGA 1 cut(s) 650
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 5 cut(s) 776, 998, 1352, 1355, 1408
ApoI RAATTY 4 cut(s) 529, 842, 863, 1195
AspLEI GCGC 2 cut(s) 458, 1381
AspS9I GGNCC 6 cut(s) 823, 836, 1060, 1175, 1324, 1346
AsuHPI GGTGA 7 cut(s) 284, 353, 484, 593, 961, 1069, 1278
AvaII GGWCC 6 cut(s) 823, 836, 1060, 1175, 1324, 1346
AxyI CCTNAGG 1 cut(s) 831
BanI GGYRCC 1 cut(s) 937
BarI GAAGNNNNNNTAC 2 cut(s) 358, 390
BbrPI CACGTG 1 cut(s) 1132
BbvI GCAGC 5 cut(s) 763, 985, 1364, 1367, 1420
BccI CCATC 3 cut(s) 834, 907, 1039
BceAI ACGGC 3 cut(s) 139, 1293, 1372
BciT130I CCWGG 1 cut(s) 879
BciVI GTATCC 1 cut(s) 1170
BcoDI GTCTC 4 cut(s) 29, 46, 101, 760
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 2 cut(s) 777, 1350
BfuAI ACCTGC 2 cut(s) 1219, 1357
BfuI GTATCC 1 cut(s) 1170
BisI GCNGC 6 cut(s) 315, 777, 999, 1353, 1356, 1409
BlpI GCTNAGC 1 cut(s) 1002
BlsI GCNGC 6 cut(s) 316, 778, 1000, 1354, 1357, 1410
Bme1390I CCNGG 1 cut(s) 879
Bme18I GGWCC 6 cut(s) 823, 836, 1060, 1175, 1324, 1346
BmgBI CACGTC 1 cut(s) 115
BmgT120I GGNCC 6 cut(s) 823, 836, 1060, 1175, 1324, 1346
BmiI GGNNCC 2 cut(s) 837, 939
BmrFI CCNGG 1 cut(s) 879
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 6 cut(s) 96, 211, 388, 772, 1198, 1252
BmuI ACTGGG 1 cut(s) 95
BplI GAGNNNNNCTC 2 cut(s) 26, 58
Bpu10I CCTNAGC 2 cut(s) 294, 1154
Bpu1102I GCTNAGC 1 cut(s) 1002
BpuEI CTTGAG 2 cut(s) 1185, 1239
BsaAI YACGTR 1 cut(s) 1132
BsaHI GRCGYC 1 cut(s) 489
BsaI GGTCTC 1 cut(s) 101
BsaJI CCNNGG 5 cut(s) 558, 858, 877, 981, 1342
BsaWI WCCGGW 1 cut(s) 650
BsaXI ACNNNNNCTCC 2 cut(s) 880, 910
Bsc4I CCNNNNNNNGG 5 cut(s) 832, 934, 1013, 1124, 1321
Bse1I ACTGG 5 cut(s) 101, 1063, 1247, 1327, 1405
Bse21I CCTNAGG 1 cut(s) 831
Bse3DI GCAATG 3 cut(s) 465, 478, 1419
BseAI TCCGGA 1 cut(s) 650
BseBI CCWGG 1 cut(s) 879
BseDI CCNNGG 5 cut(s) 558, 858, 877, 981, 1342
BseGI GGATG 6 cut(s) 204, 594, 826, 1189, 1243, 1432
BseLI CCNNNNNNNGG 5 cut(s) 832, 934, 1013, 1124, 1321
BseMI GCAATG 3 cut(s) 465, 478, 1419
BseMII CTCAG 3 cut(s) 282, 845, 1016
BseNI ACTGG 5 cut(s) 101, 1063, 1247, 1327, 1405
BseXI GCAGC 5 cut(s) 763, 985, 1364, 1367, 1420
BsgI GTGCAG 1 cut(s) 1166
BshFI GGCC 1 cut(s) 65
BshNI GGYRCC 1 cut(s) 937
BsiSI CCGG 1 cut(s) 651
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 5 cut(s) 832, 934, 1013, 1124, 1321
BsmAI GTCTC 4 cut(s) 29, 46, 101, 760
BsmFI GGGAC 1 cut(s) 253
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 101
Bsp13I TCCGGA 1 cut(s) 650
Bsp143I GATC 2 cut(s) 664, 1016
Bsp1720I GCTNAGC 1 cut(s) 1002
Bsp19I CCATGG 2 cut(s) 558, 981
BspACI CCGC 3 cut(s) 153, 314, 1385
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 3 cut(s) 281, 844, 1015
BspEI TCCGGA 1 cut(s) 650
BspLI GGNNCC 2 cut(s) 837, 939
BspMAI CTGCAG 2 cut(s) 781, 1354
BspMI ACCTGC 2 cut(s) 1219, 1357
BspPI GGATC 2 cut(s) 659, 1024
BspT107I GGYRCC 1 cut(s) 937
BspTNI GGTCTC 1 cut(s) 101
BsrDI GCAATG 3 cut(s) 465, 478, 1419
BsrI ACTGG 5 cut(s) 101, 1063, 1247, 1327, 1405
BssECI CCNNGG 5 cut(s) 558, 858, 877, 981, 1342
BssMI GATC 2 cut(s) 664, 1016
BssNAI GTATAC 1 cut(s) 1237
BssNI GRCGYC 1 cut(s) 489
BssT1I CCWWGG 4 cut(s) 558, 858, 981, 1342
Bst1107I GTATAC 1 cut(s) 1237
Bst2UI CCWGG 1 cut(s) 879
Bst4CI ACNGT 7 cut(s) 40, 176, 370, 446, 676, 946, 1221
Bst6I CTCTTC 1 cut(s) 49
BstACI GRCGYC 1 cut(s) 489
BstBAI YACGTR 1 cut(s) 1132
BstC8I GCNNGC 1 cut(s) 1296
BstDEI CTNAG 5 cut(s) 268, 294, 831, 1002, 1154
BstDSI CCRYGG 2 cut(s) 558, 981
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 6 cut(s) 204, 594, 826, 1189, 1243, 1432
BstHHI GCGC 2 cut(s) 458, 1381
BstKTI GATC 2 cut(s) 667, 1019
BstMAI GTCTC 4 cut(s) 29, 46, 101, 760
BstMBI GATC 2 cut(s) 664, 1016
BstMWI GCNNNNNNNGC 5 cut(s) 323, 782, 995, 1361, 1378
BstNI CCWGG 1 cut(s) 879
BstNSI RCATGY 1 cut(s) 1243
BstPI GGTNACC 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 877
BstSFI CTRYAG 2 cut(s) 777, 1350
BstV1I GCAGC 5 cut(s) 763, 985, 1364, 1367, 1420
BstZ17I GTATAC 1 cut(s) 1237
Bsu36I CCTNAGG 1 cut(s) 831
BsuI GTATCC 1 cut(s) 1170
BsuRI GGCC 1 cut(s) 65
BtgI CCRYGG 2 cut(s) 558, 981
BtrI CACGTC 1 cut(s) 115
BtsCI GGATG 6 cut(s) 204, 594, 826, 1189, 1243, 1432
BtsI GCAGTG 2 cut(s) 1102, 1289
BtsIMutI CAGTG 4 cut(s) 536, 951, 1102, 1289
BveI ACCTGC 2 cut(s) 1219, 1357
Cac8I GCNNGC 1 cut(s) 1296
CaiI CAGNNNCTG 3 cut(s) 317, 506, 605
CfoI GCGC 2 cut(s) 458, 1381
Cfr13I GGNCC 6 cut(s) 823, 836, 1060, 1175, 1324, 1346
CseI GACGC 2 cut(s) 478, 1159
Csp6I GTAC 2 cut(s) 366, 1066
CviQI GTAC 2 cut(s) 366, 1066
DdeI CTNAG 5 cut(s) 268, 294, 831, 1002, 1154
DpnI GATC 2 cut(s) 666, 1018
DpnII GATC 2 cut(s) 664, 1016
DraIII CACNNNGTG 1 cut(s) 84
DrdI GACNNNNNNGTC 2 cut(s) 38, 128
DseDI GACNNNNNNGTC 2 cut(s) 38, 128
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
EciI GGCGGA 1 cut(s) 1374
Eco130I CCWWGG 4 cut(s) 558, 858, 981, 1342
Eco147I AGGCCT 1 cut(s) 65
Eco31I GGTCTC 1 cut(s) 101
Eco47I GGWCC 6 cut(s) 823, 836, 1060, 1175, 1324, 1346
Eco57I CTGAAG 4 cut(s) 206, 372, 702, 732
Eco72I CACGTG 1 cut(s) 1132
Eco81I CCTNAGG 1 cut(s) 831
Eco91I GGTNACC 1 cut(s) 272
EcoO109I RGGNCCY 1 cut(s) 1346
EcoO65I GGTNACC 1 cut(s) 272
EcoRII CCWGG 1 cut(s) 877
EcoT14I CCWWGG 4 cut(s) 558, 858, 981, 1342
EcoT22I ATGCAT 1 cut(s) 1245
ErhI CCWWGG 4 cut(s) 558, 858, 981, 1342
FalI AAGNNNNNCTT 2 cut(s) 700, 732
FaqI GGGAC 1 cut(s) 253
FblI GTMKAC 2 cut(s) 793, 1236
Fnu4HI GCNGC 6 cut(s) 315, 777, 999, 1353, 1356, 1409
FokI GGATG 6 cut(s) 211, 601, 813, 1176, 1230, 1419
Fsp4HI GCNGC 6 cut(s) 315, 777, 999, 1353, 1356, 1409
FspBI CTAG 1 cut(s) 257
GlaI GCGC 2 cut(s) 457, 1380
GluI GCNGC 6 cut(s) 315, 777, 999, 1353, 1356, 1409
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 651
HgaI GACGC 2 cut(s) 478, 1159
HhaI GCGC 2 cut(s) 458, 1381
Hin1I GRCGYC 1 cut(s) 489
Hin6I GCGC 2 cut(s) 456, 1379
HinP1I GCGC 2 cut(s) 456, 1379
HincII GTYRAC 2 cut(s) 794, 1311
HindII GTYRAC 2 cut(s) 794, 1311
HindIII AAGCTT 1 cut(s) 1362
HinfI GANTC 1 cut(s) 416
HpaII CCGG 1 cut(s) 651
HphI GGTGA 7 cut(s) 284, 353, 484, 593, 961, 1069, 1278
Hpy166II GTNNAC 5 cut(s) 24, 112, 794, 1237, 1311
Hpy188I TCNGA 7 cut(s) 186, 379, 601, 691, 736, 1016, 1335
Hpy188III TCNNGA 4 cut(s) 138, 651, 839, 1256
Hpy8I GTNNAC 5 cut(s) 24, 112, 794, 1237, 1311
Hpy99I CGWCG 2 cut(s) 35, 798
HpyAV CCTTC 7 cut(s) 384, 505, 515, 578, 657, 942, 1463
HpyCH4III ACNGT 7 cut(s) 40, 176, 370, 446, 676, 946, 1221
HpyCH4IV ACGT 3 cut(s) 114, 796, 1131
HpyF10VI GCNNNNNNNGC 5 cut(s) 323, 782, 995, 1361, 1378
HpyF3I CTNAG 5 cut(s) 268, 294, 831, 1002, 1154
HpySE526I ACGT 3 cut(s) 114, 796, 1131
Hsp92I GRCGYC 1 cut(s) 489
HspAI GCGC 2 cut(s) 456, 1379
Kpn2I TCCGGA 1 cut(s) 650
Kzo9I GATC 2 cut(s) 664, 1016
LmnI GCTCC 2 cut(s) 503, 881
Lsp1109I GCAGC 5 cut(s) 763, 985, 1364, 1367, 1420
LweI GCATC 6 cut(s) 96, 211, 388, 772, 1198, 1252
MaeI CTAG 1 cut(s) 257
MaeII ACGT 3 cut(s) 114, 796, 1131
MaeIII GTNAC 6 cut(s) 272, 341, 358, 490, 670, 1284
MalI GATC 2 cut(s) 666, 1018
MboI GATC 2 cut(s) 664, 1016
MboII GAAGA 8 cut(s) 36, 39, 42, 199, 415, 445, 723, 738
MfeI CAATTG 1 cut(s) 411
MlyI GAGTC 1 cut(s) 425
MmeI TCCRAC 3 cut(s) 994, 1105, 1195
MnlI CCTC 8 cut(s) 55, 166, 519, 595, 840, 939, 1392, 1459
Mph1103I ATGCAT 1 cut(s) 1245
MroI TCCGGA 1 cut(s) 650
MseI TTAA 7 cut(s) 56, 615, 684, 768, 846, 867, 1053
MspA1I CMGCKG 3 cut(s) 314, 776, 1372
MspI CCGG 1 cut(s) 651
MspR9I CCNGG 1 cut(s) 879
MunI CAATTG 1 cut(s) 411
MvaI CCWGG 1 cut(s) 879
MwoI GCNNNNNNNGC 5 cut(s) 323, 782, 995, 1361, 1378
NcoI CCATGG 2 cut(s) 558, 981
NdeII GATC 2 cut(s) 664, 1016
NlaIV GGNNCC 2 cut(s) 837, 939
NmuCI GTSAC 4 cut(s) 272, 341, 490, 1284
NsiI ATGCAT 1 cut(s) 1245
NspI RCATGY 1 cut(s) 1243
PceI AGGCCT 1 cut(s) 65
PcsI WCGNNNNNNNCGW 1 cut(s) 111
PkrI GCNGC 6 cut(s) 316, 778, 1000, 1354, 1357, 1410
PleI GAGTC 1 cut(s) 424
PmaCI CACGTG 1 cut(s) 1132
PmlI CACGTG 1 cut(s) 1132
PpsI GAGTC 1 cut(s) 424
Ppu21I YACGTR 1 cut(s) 1132
PpuMI RGGWCCY 1 cut(s) 1346
Psp5II RGGWCCY 1 cut(s) 1346
Psp6I CCWGG 1 cut(s) 877
PspCI CACGTG 1 cut(s) 1132
PspEI GGTNACC 1 cut(s) 272
PspGI CCWGG 1 cut(s) 877
PspN4I GGNNCC 2 cut(s) 837, 939
PspPI GGNCC 6 cut(s) 823, 836, 1060, 1175, 1324, 1346
PspPPI RGGWCCY 1 cut(s) 1346
PstI CTGCAG 2 cut(s) 781, 1354
PstNI CAGNNNCTG 3 cut(s) 317, 506, 605
PvuII CAGCTG 2 cut(s) 776, 1372
RsaI GTAC 2 cut(s) 367, 1067
RsaNI GTAC 2 cut(s) 366, 1066
SalI GTCGAC 1 cut(s) 792
SaqAI TTAA 7 cut(s) 56, 615, 684, 768, 846, 867, 1053
SatI GCNGC 6 cut(s) 315, 777, 999, 1353, 1356, 1409
Sau3AI GATC 2 cut(s) 664, 1016
Sau96I GGNCC 6 cut(s) 823, 836, 1060, 1175, 1324, 1346
SchI GAGTC 1 cut(s) 425
ScrFI CCNGG 1 cut(s) 879
SfaNI GCATC 6 cut(s) 96, 211, 388, 772, 1198, 1252
SfcI CTRYAG 2 cut(s) 777, 1350
SinI GGWCC 6 cut(s) 823, 836, 1060, 1175, 1324, 1346
SmlI CTYRAG 2 cut(s) 1200, 1254
SmoI CTYRAG 2 cut(s) 1200, 1254
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 3 cut(s) 153, 314, 1385
SspI AATATT 1 cut(s) 144
SspMI CTAG 1 cut(s) 257
StuI AGGCCT 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 877
StyI CCWWGG 4 cut(s) 558, 858, 981, 1342
TaaI ACNGT 7 cut(s) 40, 176, 370, 446, 676, 946, 1221
TaiI ACGT 3 cut(s) 117, 799, 1134
TaqI TCGA 2 cut(s) 105, 793
TatI WGTACW 1 cut(s) 1065
TauI GCSGC 1 cut(s) 317
Tru1I TTAA 7 cut(s) 56, 615, 684, 768, 846, 867, 1053
Tru9I TTAA 7 cut(s) 56, 615, 684, 768, 846, 867, 1053
TscAI CASTG 4 cut(s) 543, 951, 1102, 1296
TseFI GTSAC 4 cut(s) 272, 341, 490, 1284
TseI GCWGC 5 cut(s) 776, 998, 1352, 1355, 1408
Tsp45I GTSAC 4 cut(s) 272, 341, 490, 1284
TspDTI ATGAA 6 cut(s) 42, 534, 605, 753, 1029, 1381
TspRI CASTG 4 cut(s) 543, 951, 1102, 1296
VpaK11BI GGWCC 6 cut(s) 823, 836, 1060, 1175, 1324, 1346
XapI RAATTY 4 cut(s) 529, 842, 863, 1195
XceI RCATGY 1 cut(s) 1243
XmiI GTMKAC 2 cut(s) 793, 1236
XspI CTAG 1 cut(s) 257
Zsp2I ATGCAT 1 cut(s) 1245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.