AT5G54920

Has 30201 Blast hits to 17322 proteins in 780 species Archae - 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001651
Physical Location & Seq
Forward (+)
22302000 .. 22305795
3796 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G54920.2

Sequence Viewer

Length: 1554 bp
ATGGCAATCGCGAAGAAATTGGAAAATGAGATCTCACGCTCTTCTCCTTCGTCATCATCATCATCGCTGAACGAAGCTCTGTTAATCTCTACTATGTGTATCATCGGCTTACAAGTCCATGTGCATATCAACGATGGCTCTGTGTTTTCTGGGATATTCTACACTGTCTCTCTTGAGAATGAATTCAGTATTGTGTTGAAGAATGCAAAACTTACTAAGAAGGGAAGAAGTAAATCGAATGTAGAAAGTGGGAAGATTGTGGAGACACTTGTGATTTTGTCTTCCAATATTGTTCAAATTGTTGCAGAGGGAGTCTCGCTTTCGTCCAATGTTGCAGGGGAGATTGAGGGTGAAAATGTCGTGTCGGCCGTGGCAGTTTCTTCCTTCAATTCTGGCAAGAACAGAAGGGGCACTAATCGTAGAAGGAATTCCGCGAAACGTGAAAATTGTTTGGAAAGTAAAGCAAGAACCTTGACATCTGGGGAGACCGCAGGTGCCATGAAAGAGCCAGGGAGAAGAGATGAGAACAAATATCATCCTAGCTCACTGAACCATCAACGACAGGCAGGAGTCCGCATTTTGAAGAATAGCAAAAAAATTACTGATGTTCATCAGGAGGATAACGTTGAAGCCAGAAGCTCAAGTTGTAGCTTGGACAACATGTCTGAACGTGTAAAGCCGATAGAACAAGAGAAAATGCCGGAACCTTCTAGTAATGGTTTTCACGATGCTACGGAGAGACCCTCGTCAACTGAAAATTCTTCATCACAGAGCACTACTGTGGATGAAAACTCAGAAGTGAGTCTGGTTTTGGTGGTATCTACAAATAGCTTACCACCTACGCAGGCAACAGACCCTGACAAGAAGGCTAAGGAGTTTAAACTGAATCCAGGAGCAAAGACTTTTTCCCCATCTCTTGCAAAACGTCTTACATCAGCTCATGCCGGTATGACGCCTGTTGTTGCGAATATGGGTTATGTGCCAAGCAATACTCCTATGTTACCAGTTCCAGAAGCTGTTCAACCAGAAATTGGAATCAGCCCTTTCTTGTCTCATGCATCTTCACCTTCCAAGTTTGTTCCGTACACTAATTTGGCTACTGGAAATGCTGGTGGTGGATCTCATTTTCCCCAACATATGGTTGGACCAACTATTAACAGGGGACAGCCACATAGATTCACCACTCAGTACCATTCTGTTCAACCCACACCAATGCTTGTAAATCCCAATCCTCAGGTGATGGTCGGGAGATCAGGACAGCTTATGTATATGCAACCAATTTCTCAGGATTTGGTTCAAGGAGCACCACATAACTCACATTTGCCTCCTCGTCCTCTCTTTACTCCCCAACAGTTTCAGTATCCAAAGCATCAGAGTCTAATCGCAACTGGTCAACCGATGCATCTATATGCTCCACAACCATTTGCAGCCAATGGACATCAGCCTTACACAGTCATGCCTACCGATATTCCGGTTATGCAGTCACCTTTTCCCATTAACCGGGCCATGCCAATTCCGGTTCCTAATGGTTTCTATGGCACAAAGTTTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

517

Amino Acids

56.03

Weight (kDa)

9.29

Isoelectric Point (pI)

61.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SM-ATX PF14438 24 - 103 3.2e-23 Ataxin 2 SM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 482
Acc36I ACCTGC 1 cut(s) 482
AccB1I GGYRCC 1 cut(s) 494
AccB7I CCANNNNNTGG 2 cut(s) 1031, 1138
AccII CGCG 2 cut(s) 11, 434
AciI CCGC 3 cut(s) 432, 489, 574
AclI AACGTT 1 cut(s) 624
AclWI GGATC 1 cut(s) 1126
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 3 cut(s) 182, 427, 757
AcyI GRCGYC 1 cut(s) 953
AfaI GTAC 2 cut(s) 1085, 1190
AfiI CCNNNNNNNGG 3 cut(s) 1031, 1138, 1500
AflIII ACRYGT 2 cut(s) 660, 670
AgsI TTSAA 8 cut(s) 199, 296, 388, 583, 629, 1022, 1202, 1298
AhdI GACNNNNNGTC 1 cut(s) 661
AjnI CCWGG 2 cut(s) 508, 889
AleI CACNNNNGTG 1 cut(s) 779
AluBI AGCT 8 cut(s) 77, 543, 639, 651, 831, 938, 1016, 1261
AluI AGCT 8 cut(s) 77, 543, 639, 651, 831, 938, 1016, 1261
Alw21I GWGCWC 2 cut(s) 776, 1306
Alw26I GTCTC 6 cut(s) 172, 257, 319, 479, 733, 1056
AlwI GGATC 1 cut(s) 1126
AlwNI CAGNNNCTG 2 cut(s) 857, 1016
AoxI GGCC 2 cut(s) 366, 1503
ApeKI GCWGC 1 cut(s) 1427
ApoI RAATTY 3 cut(s) 182, 427, 757
Asp700I GAANNNNTTC 3 cut(s) 182, 427, 1017
AspS9I GGNCC 2 cut(s) 1145, 1503
AsuC2I CCSGG 1 cut(s) 1502
AsuHPI GGTGA 5 cut(s) 362, 1056, 1171, 1249, 1476
AvaII GGWCC 1 cut(s) 1145
AxyI CCTNAGG 1 cut(s) 1233
BaeGI GKGCMC 1 cut(s) 413
BanI GGYRCC 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 2 cut(s) 776, 1306
BbvI GCAGC 1 cut(s) 1439
BccI CCATC 4 cut(s) 128, 561, 919, 1234
BceAI ACGGC 1 cut(s) 353
BciT130I CCWGG 2 cut(s) 510, 891
BciVI GTATCC 1 cut(s) 1371
BcnI CCSGG 1 cut(s) 1502
BcoDI GTCTC 6 cut(s) 172, 257, 319, 479, 733, 1056
BfaI CTAG 2 cut(s) 540, 711
BfmI CTRYAG 1 cut(s) 1550
BfuAI ACCTGC 1 cut(s) 482
BfuI GTATCC 1 cut(s) 1371
BglII AGATCT 1 cut(s) 30
BisI GCNGC 1 cut(s) 1428
BlsI GCNGC 1 cut(s) 1429
Bme1390I CCNGG 3 cut(s) 510, 891, 1502
Bme18I GGWCC 1 cut(s) 1145
BmeRI GACNNNNNGTC 1 cut(s) 661
BmgT120I GGNCC 2 cut(s) 1145, 1503
BmiI GGNNCC 3 cut(s) 496, 705, 1521
BmrFI CCNGG 3 cut(s) 510, 891, 1502
BmsI GCATC 5 cut(s) 718, 1067, 1378, 1389, 1411
BoxI GACNNNNGTC 1 cut(s) 745
BpiI GAAGAC 1 cut(s) 273
BplI GAGNNNNNCTC 4 cut(s) 299, 331, 728, 760
Bpu10I CCTNAGC 1 cut(s) 870
BpuEI CTTGAG 2 cut(s) 194, 625
BpuMI CCSGG 1 cut(s) 1502
BsaBI GATNNNNATC 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 953
BsaI GGTCTC 2 cut(s) 479, 733
BsaJI CCNNGG 2 cut(s) 369, 509
BsaWI WCCGGW 2 cut(s) 1471, 1516
Bsc4I CCNNNNNNNGG 3 cut(s) 1031, 1138, 1500
Bse118I RCCGGY 1 cut(s) 944
Bse1I ACTGG 3 cut(s) 1004, 1105, 1393
Bse21I CCTNAGG 1 cut(s) 1233
Bse8I GATNNNNATC 1 cut(s) 609
BseBI CCWGG 2 cut(s) 510, 891
BseDI CCNNGG 2 cut(s) 369, 509
BseGI GGATG 2 cut(s) 535, 790
BseJI GATNNNNATC 1 cut(s) 609
BseLI CCNNNNNNNGG 3 cut(s) 1031, 1138, 1500
BseMII CTCAG 4 cut(s) 807, 1199, 1247, 1298
BseNI ACTGG 3 cut(s) 1004, 1105, 1393
BseRI GAGGAG 1 cut(s) 1317
BseSI GKGCMC 1 cut(s) 413
BseX3I CGGCCG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 1439
Bsh1236I CGCG 2 cut(s) 11, 434
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 368, 1505
BshNI GGYRCC 1 cut(s) 494
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 2 cut(s) 776, 1306
BsiSI CCGG 5 cut(s) 701, 945, 1472, 1501, 1517
BslFI GGGAC 1 cut(s) 1176
BslI CCNNNNNNNGG 3 cut(s) 1031, 1138, 1500
BsmAI GTCTC 6 cut(s) 172, 257, 319, 479, 733, 1056
BsmFI GGGAC 1 cut(s) 1176
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 2 cut(s) 368, 1505
Bso31I GGTCTC 2 cut(s) 479, 733
Bsp1286I GDGCHC 3 cut(s) 413, 776, 1306
Bsp143I GATC 3 cut(s) 30, 1118, 1250
Bsp68I TCGCGA 1 cut(s) 11
BspACI CCGC 3 cut(s) 432, 489, 574
BspANI GGCC 2 cut(s) 368, 1505
BspCNI CTCAG 4 cut(s) 806, 1198, 1246, 1297
BspFNI CGCG 2 cut(s) 11, 434
BspLI GGNNCC 3 cut(s) 496, 705, 1521
BspMI ACCTGC 1 cut(s) 482
BspPI GGATC 1 cut(s) 1126
BspQI GCTCTTC 1 cut(s) 46
BspT107I GGYRCC 1 cut(s) 494
BspTNI GGTCTC 2 cut(s) 479, 733
BsrFI RCCGGY 1 cut(s) 944
BsrI ACTGG 3 cut(s) 1004, 1105, 1393
BssAI RCCGGY 1 cut(s) 944
BssECI CCNNGG 2 cut(s) 369, 509
BssMI GATC 3 cut(s) 30, 1118, 1250
BssNI GRCGYC 1 cut(s) 953
Bst2UI CCWGG 2 cut(s) 510, 891
Bst4CI ACNGT 4 cut(s) 166, 781, 1353, 1453
Bst6I CTCTTC 2 cut(s) 46, 511
BstACI GRCGYC 1 cut(s) 953
BstC8I GCNNGC 1 cut(s) 846
BstDEI CTNAG 6 cut(s) 216, 793, 870, 1185, 1233, 1284
BstDSI CCRYGG 1 cut(s) 369
BstF5I GGATG 2 cut(s) 535, 790
BstFNI CGCG 2 cut(s) 11, 434
BstKTI GATC 3 cut(s) 33, 1121, 1253
BstMAI GTCTC 6 cut(s) 172, 257, 319, 479, 733, 1056
BstMBI GATC 3 cut(s) 30, 1118, 1250
BstMCI CGRYCG 1 cut(s) 369
BstNI CCWGG 2 cut(s) 510, 891
BstNSI RCATGY 1 cut(s) 664
BstPAI GACNNNNGTC 1 cut(s) 745
BstSCI CCNGG 3 cut(s) 508, 889, 1500
BstSFI CTRYAG 1 cut(s) 1550
BstSLI GKGCMC 1 cut(s) 413
BstUI CGCG 2 cut(s) 11, 434
BstV1I GCAGC 1 cut(s) 1439
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 2 cut(s) 30, 1118
BstYI RGATCY 2 cut(s) 30, 1118
BstZI CGGCCG 1 cut(s) 366
Bsu36I CCTNAGG 1 cut(s) 1233
BsuI GTATCC 1 cut(s) 1371
BsuRI GGCC 2 cut(s) 368, 1505
BtgI CCRYGG 1 cut(s) 369
BtgZI GCGATG 1 cut(s) 48
BtsCI GGATG 2 cut(s) 535, 790
BtsIMutI CAGTG 2 cut(s) 162, 545
BtuMI TCGCGA 1 cut(s) 11
BveI ACCTGC 1 cut(s) 482
Cac8I GCNNGC 1 cut(s) 846
CaiI CAGNNNCTG 2 cut(s) 857, 1016
Cfr10I RCCGGY 1 cut(s) 944
Cfr13I GGNCC 2 cut(s) 1145, 1503
CseI GACGC 1 cut(s) 961
Csp6I GTAC 2 cut(s) 1084, 1189
CviAII CATG 7 cut(s) 119, 499, 661, 941, 1055, 1456, 1507
CviQI GTAC 2 cut(s) 1084, 1189
DdeI CTNAG 6 cut(s) 216, 793, 870, 1185, 1233, 1284
DpnI GATC 3 cut(s) 32, 1120, 1252
DpnII GATC 3 cut(s) 30, 1118, 1250
DraI TTTAAA 1 cut(s) 880
DriI GACNNNNNGTC 1 cut(s) 661
EaeI YGGCCR 1 cut(s) 366
EagI CGGCCG 1 cut(s) 366
Eam1104I CTCTTC 2 cut(s) 46, 511
Eam1105I GACNNNNNGTC 1 cut(s) 661
EarI CTCTTC 2 cut(s) 46, 511
EclXI CGGCCG 1 cut(s) 366
Eco31I GGTCTC 2 cut(s) 479, 733
Eco47I GGWCC 1 cut(s) 1145
Eco52I CGGCCG 1 cut(s) 366
Eco81I CCTNAGG 1 cut(s) 1233
EcoRI GAATTC 2 cut(s) 182, 427
EcoRII CCWGG 2 cut(s) 508, 889
EcoT22I ATGCAT 2 cut(s) 1060, 1404
FaeI CATG 7 cut(s) 122, 502, 664, 944, 1058, 1459, 1510
FaqI GGGAC 1 cut(s) 1176
FatI CATG 7 cut(s) 118, 498, 660, 940, 1054, 1455, 1506
FauNDI CATATG 1 cut(s) 1137
Fnu4HI GCNGC 1 cut(s) 1428
FokI GGATG 2 cut(s) 522, 797
Fsp4HI GCNGC 1 cut(s) 1428
FspBI CTAG 2 cut(s) 540, 711
GluI GCNGC 1 cut(s) 1428
HaeIII GGCC 2 cut(s) 368, 1505
HapII CCGG 5 cut(s) 701, 945, 1472, 1501, 1517
HgaI GACGC 1 cut(s) 961
Hin1I GRCGYC 1 cut(s) 953
Hin1II CATG 7 cut(s) 122, 502, 664, 944, 1058, 1459, 1510
HincII GTYRAC 2 cut(s) 750, 1394
HindII GTYRAC 2 cut(s) 750, 1394
HinfI GANTC 7 cut(s) 312, 570, 802, 886, 1035, 1176, 1375
HpaII CCGG 5 cut(s) 701, 945, 1472, 1501, 1517
HphI GGTGA 5 cut(s) 362, 1056, 1171, 1249, 1476
Hpy166II GTNNAC 3 cut(s) 750, 1086, 1394
Hpy188I TCNGA 3 cut(s) 667, 796, 1374
Hpy188III TCNNGA 8 cut(s) 10, 173, 614, 725, 1010, 1246, 1254, 1286
Hpy8I GTNNAC 3 cut(s) 750, 1086, 1394
HpyAV CCTTC 8 cut(s) 57, 214, 394, 399, 417, 717, 859, 1077
HpyCH4III ACNGT 4 cut(s) 166, 781, 1353, 1453
HpyCH4IV ACGT 4 cut(s) 439, 624, 670, 925
HpyF3I CTNAG 6 cut(s) 216, 793, 870, 1185, 1233, 1284
HpySE526I ACGT 4 cut(s) 439, 624, 670, 925
Hsp92I GRCGYC 1 cut(s) 953
Hsp92II CATG 7 cut(s) 122, 502, 664, 944, 1058, 1459, 1510
Kzo9I GATC 3 cut(s) 30, 1118, 1250
LguI GCTCTTC 1 cut(s) 46
LmnI GCTCC 3 cut(s) 893, 1301, 1417
Lsp1109I GCAGC 1 cut(s) 1439
LweI GCATC 5 cut(s) 718, 1067, 1378, 1389, 1411
MaeI CTAG 2 cut(s) 540, 711
MaeII ACGT 4 cut(s) 439, 624, 670, 925
MaeIII GTNAC 2 cut(s) 999, 1482
MalI GATC 3 cut(s) 32, 1120, 1252
MboI GATC 3 cut(s) 30, 1118, 1250
MflI RGATCY 2 cut(s) 30, 1118
MhlI GDGCHC 3 cut(s) 413, 776, 1306
MlyI GAGTC 4 cut(s) 321, 579, 811, 1384
MmeI TCCRAC 1 cut(s) 1123
MnlI CCTC 8 cut(s) 301, 340, 610, 754, 1242, 1335, 1338, 1344
Mph1103I ATGCAT 2 cut(s) 1060, 1404
MroXI GAANNNNTTC 3 cut(s) 182, 427, 1017
MseI TTAA 4 cut(s) 83, 879, 1155, 1497
MslI CAYNNNNRTG 4 cut(s) 779, 1211, 1407, 1454
MspI CCGG 5 cut(s) 701, 945, 1472, 1501, 1517
MspR9I CCNGG 3 cut(s) 510, 891, 1502
MssI GTTTAAAC 1 cut(s) 880
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 2 cut(s) 510, 891
MvnI CGCG 2 cut(s) 11, 434
NciI CCSGG 1 cut(s) 1502
NdeI CATATG 1 cut(s) 1137
NdeII GATC 3 cut(s) 30, 1118, 1250
NlaIII CATG 7 cut(s) 122, 502, 664, 944, 1058, 1459, 1510
NlaIV GGNNCC 3 cut(s) 496, 705, 1521
NmuCI GTSAC 1 cut(s) 1482
NruI TCGCGA 1 cut(s) 11
NsiI ATGCAT 2 cut(s) 1060, 1404
NspI RCATGY 1 cut(s) 664
OliI CACNNNNGTG 1 cut(s) 779
PaqCI CACCTGC 1 cut(s) 482
PciI ACATGT 1 cut(s) 660
PciSI GCTCTTC 1 cut(s) 46
PcsI WCGNNNNNNNCGW 1 cut(s) 366
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 3 cut(s) 182, 427, 1017
PfeI GAWTC 3 cut(s) 886, 1035, 1176
PflMI CCANNNNNTGG 2 cut(s) 1031, 1138
PfoI TCCNGGA 1 cut(s) 889
PkrI GCNGC 1 cut(s) 1429
PleI GAGTC 4 cut(s) 320, 578, 810, 1383
PmeI GTTTAAAC 1 cut(s) 880
PpsI GAGTC 4 cut(s) 320, 578, 810, 1383
PscI ACATGT 1 cut(s) 660
PshAI GACNNNNGTC 1 cut(s) 745
Psp1406I AACGTT 1 cut(s) 624
Psp6I CCWGG 2 cut(s) 508, 889
PspGI CCWGG 2 cut(s) 508, 889
PspN4I GGNNCC 3 cut(s) 496, 705, 1521
PspPI GGNCC 2 cut(s) 1145, 1503
PstNI CAGNNNCTG 2 cut(s) 857, 1016
PsuI RGATCY 2 cut(s) 30, 1118
RruI TCGCGA 1 cut(s) 11
RsaI GTAC 2 cut(s) 1085, 1190
RsaNI GTAC 2 cut(s) 1084, 1189
RseI CAYNNNNRTG 4 cut(s) 779, 1211, 1407, 1454
SapI GCTCTTC 1 cut(s) 46
SaqAI TTAA 4 cut(s) 83, 879, 1155, 1497
SatI GCNGC 1 cut(s) 1428
Sau3AI GATC 3 cut(s) 30, 1118, 1250
Sau96I GGNCC 2 cut(s) 1145, 1503
SchI GAGTC 4 cut(s) 321, 579, 811, 1384
ScrFI CCNGG 3 cut(s) 510, 891, 1502
SduI GDGCHC 3 cut(s) 413, 776, 1306
SfaNI GCATC 5 cut(s) 718, 1067, 1378, 1389, 1411
SfcI CTRYAG 1 cut(s) 1550
SinI GGWCC 1 cut(s) 1145
SmiMI CAYNNNNRTG 4 cut(s) 779, 1211, 1407, 1454
SmlI CTYRAG 2 cut(s) 173, 640
SmoI CTYRAG 2 cut(s) 173, 640
SsiI CCGC 3 cut(s) 432, 489, 574
SspI AATATT 1 cut(s) 289
SspMI CTAG 2 cut(s) 540, 711
StyD4I CCNGG 3 cut(s) 508, 889, 1500
TaaI ACNGT 4 cut(s) 166, 781, 1353, 1453
TaiI ACGT 4 cut(s) 442, 627, 673, 928
TaqI TCGA 1 cut(s) 236
TfiI GAWTC 3 cut(s) 886, 1035, 1176
Tru1I TTAA 4 cut(s) 83, 879, 1155, 1497
Tru9I TTAA 4 cut(s) 83, 879, 1155, 1497
TscAI CASTG 2 cut(s) 169, 552
TseFI GTSAC 1 cut(s) 1482
TseI GCWGC 1 cut(s) 1427
Tsp45I GTSAC 1 cut(s) 1482
TspDTI ATGAA 5 cut(s) 195, 515, 599, 753, 801
TspGWI ACGGA 2 cut(s) 749, 1071
TspRI CASTG 2 cut(s) 169, 552
Van91I CCANNNNNTGG 2 cut(s) 1031, 1138
VpaK11BI GGWCC 1 cut(s) 1145
XapI RAATTY 3 cut(s) 182, 427, 757
XceI RCATGY 1 cut(s) 664
XcmI CCANNNNNNNNNTGG 1 cut(s) 1139
XmnI GAANNNNTTC 3 cut(s) 182, 427, 1017
XspI CTAG 2 cut(s) 540, 711
Zsp2I ATGCAT 2 cut(s) 1060, 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.