Rh6BG146800

Ataxin 2 SM domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Reverse (-)
23645702 .. 23646257
556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG146800.1

Sequence Viewer

Length: 261 bp
ATGTCTGGTGACAAAATTGAAGCTGTTATGGGTACTGTTTCTTCTGATGAGTGTTCAAAGTATGGTGCGAAGAAGTCAAGTGAGTCTGCCATAAATAAGAAGAAGGGTGGAAGGGTGCTAATGCAAAATGGGAATAGCTTTCATGGTGTTACACCCACAAGGGCTGGCAAGGAACATGGAGAGTTTGCACTGGAGTCGAGGATGGTTATGGAAGGGGGTGGATTAGGAGATTGCAGTTTCGAGAAGGAGATTGCAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

86

Amino Acids

9.09

Weight (kDa)

6.72

Isoelectric Point (pI)

32.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 34
AgsI TTSAA 2 cut(s) 20, 57
AluBI AGCT 2 cut(s) 23, 138
AluI AGCT 2 cut(s) 23, 138
AsuHPI GGTGA 1 cut(s) 20
BarI GAAGNNNNNNTAC 2 cut(s) 25, 57
BccI CCATC 1 cut(s) 196
BcgI CGANNNNNNTGC 2 cut(s) 177, 211
BpmI CTGGAG 1 cut(s) 212
BsaBI GATNNNNATC 1 cut(s) 254
Bse1I ACTGG 1 cut(s) 195
Bse8I GATNNNNATC 1 cut(s) 254
BseGI GGATG 1 cut(s) 207
BseJI GATNNNNATC 1 cut(s) 254
BseNI ACTGG 1 cut(s) 195
BsrI ACTGG 1 cut(s) 195
Bst4CI ACNGT 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 166
BstF5I GGATG 1 cut(s) 207
BtsCI GGATG 1 cut(s) 207
BtsIMutI CAGTG 1 cut(s) 188
Cac8I GCNNGC 1 cut(s) 166
Csp6I GTAC 1 cut(s) 33
CviAII CATG 2 cut(s) 143, 176
CviJI RGCY 3 cut(s) 23, 138, 164
CviKI_1 RGCY 3 cut(s) 23, 138, 164
CviQI GTAC 1 cut(s) 33
FaeI CATG 2 cut(s) 146, 179
FaiI YATR 6 cut(s) 29, 63, 92, 144, 177, 209
FatI CATG 2 cut(s) 142, 175
FokI GGATG 1 cut(s) 214
GsuI CTGGAG 1 cut(s) 212
Hin1II CATG 2 cut(s) 146, 179
HinfI GANTC 2 cut(s) 83, 194
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 46
Hpy188III TCNNGA 1 cut(s) 241
HpyAV CCTTC 4 cut(s) 97, 105, 206, 238
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 4 cut(s) 124, 188, 234, 254
Hsp92II CATG 2 cut(s) 146, 179
LpnPI CCDG 2 cut(s) 150, 176
MaeIII GTNAC 2 cut(s) 8, 148
MboII GAAGA 3 cut(s) 33, 82, 112
MluCI AATT 1 cut(s) 15
MlyI GAGTC 2 cut(s) 92, 203
MnlI CCTC 1 cut(s) 192
NlaIII CATG 2 cut(s) 146, 179
NmuCI GTSAC 1 cut(s) 8
PleI GAGTC 2 cut(s) 91, 202
PpsI GAGTC 2 cut(s) 91, 202
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SchI GAGTC 2 cut(s) 92, 203
SetI ASST 2 cut(s) 25, 140
Sse9I AATT 1 cut(s) 15
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 2 cut(s) 197, 240
TasI AATT 1 cut(s) 15
TscAI CASTG 1 cut(s) 195
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 131
TspRI CASTG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.