Rh5DG276800

Ataxin 2 SM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001651
Physical Location & Seq
Forward (+)
33869105 .. 33875755
6651 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG276800.1

Sequence Viewer

Length: 1542 bp
ATGGGGTGCAGAAACAGAGCGCTCACAGAAGAAGATGCCGTTTCTTCTTCTTCTTCATTAAGCGAGGCCTTGCTGTTTGCGACCATGTGCATCATTGGTCTCCCAGTCGATGTTCACGTGAAGGACGGCTCTGTCTACTCCGGAATCTTCCACACTGCTTCTGTGGAAAATGAATACGGCATTGTTTTGAAGAAAGCACGGATGACTAAAAAGGGTAAATCTGATGCGAATGTAGCAAATGGGGAGTTGATAGATACTCTTGTGATTCTTTCTGGTGACCTTGTCCAAGTTGTTACAAAGGGAGTTTTACTTCCAGCTGATGGTGTTGCTGGAAATACGTCTGGTGACAGAACTGAAGCTGTTACGGGTACTGTTTCTTCTGATGAGTGTTCAAAGAATGGTGCGAAGAAGTCAAGTGAGTCTGCCATAAATAAAAAGAAGGGTGGAAGGGTGCTAATGCAAAATGGGAATGACTTTCATGGTGTTACACCCACAAGGGCTGGCAAGGAACATGGAGGGAGGAATATGCCACTGAATCATATTGAGAATGCCTCAGAACTTGAAAAGAGAAGTGATGAGGTAAACTTATCAGAGATTAGAGAATCCTCTGGTGCCAGCATGAACAGGAGACAGGTGGATGATGGGTCTCAAGGGAAGCAGGATGATTTCAACCAGAAATTAGAGGTTTATAGGAAAGAAAGTGCTGACATAGTTCAGGATACAAAGATGACATCCAAGCTCTCCCCTTTCGGAGTATCTTGTGATCCTTCTACTGTAATAGTTCAACAAGACATTCAGTGTTGTGAAAGGACAACTTCAGAATACACTTCTTCCAGTTCAAATGTTGTTTCTTCAGGTTCCTCAACTTTGTTGAATCCAGCTGCTAATGTCTCAAGTCGTAATTCAGAAACAACACCAACTGAAATGATCCCTCATGGTTCAGAGTTAAATAAAAGTGGCAAGGAATTTAAGCTCAACCCAGGAGCAAAAGTATTCTCACCGTCTTTTACAAAGCCCATAGCAGCCACCTCTCCTGCAGTGCCAACAGTGGCAAGCATGGGTTTTATACCAACCAACTGCCCCGTGGTACCTGGTCCTGCCGTCCAGCCAGAAGTTGGATCGAATCCTTTCGCATCCCGTACATCTGTACCTGTTAAGGTTCTCCCATACAATAATTTCACAACTGGGAATGGTAGCAGTGCTTCTCAATTTTCACAACCTATTGTTGGACACATGAGCAGTAGGGCGCAGACAGTTAGGTATGCTGGTCAGTATCCTGTTCAGGCTGGACCGACCTATGTGCATCCAAATACTCAAGCTGTTATGGTAGGACGATTTGGACAGCTTGTCTATGTGCATCCAGTTTCTCAAGATTTGGTTCAGGGTACACCAGCCATCTCACCACTCTCTGCACGTCCTATGTTGACTCCACATCAGGTCCAGTTTCCGAAGCACCAAGGTATGGACCATTCTATTACCTTTATGATGAATCCGGTCCAGCAATTTATGTGTTCGTGTAAAATGTTCATGTTTGGAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

513

Amino Acids

54.73

Weight (kDa)

8.01

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SM-ATX PF14438 22 - 99 1.8e-25 Ataxin 2 SM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
Acc65I GGTACC 1 cut(s) 1087
AccB1I GGYRCC 2 cut(s) 611, 1087
AccB7I CCANNNNNTGG 3 cut(s) 320, 1115, 1462
AccI GTMKAC 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 140
AclWI GGATC 3 cut(s) 758, 922, 1126
AcsI RAATTY 1 cut(s) 965
AcuI CTGAAG 3 cut(s) 375, 801, 837
AcvI CACGTG 1 cut(s) 118
AfaI GTAC 5 cut(s) 370, 1089, 1141, 1149, 1387
AfeI AGCGCT 1 cut(s) 21
AfiI CCNNNNNNNGG 4 cut(s) 320, 1115, 1226, 1462
AgsI TTSAA 7 cut(s) 190, 393, 563, 670, 785, 840, 874
AhdI GACNNNNNGTC 1 cut(s) 1346
AjiI CACGTC 1 cut(s) 1415
AjnI CCWGG 2 cut(s) 979, 1090
AluBI AGCT 7 cut(s) 317, 359, 739, 881, 973, 1319, 1345
AluI AGCT 7 cut(s) 317, 359, 739, 881, 973, 1319, 1345
Alw26I GTCTC 4 cut(s) 104, 622, 651, 895
AlwI GGATC 3 cut(s) 758, 922, 1126
Aor13HI TCCGGA 1 cut(s) 140
Aor51HI AGCGCT 1 cut(s) 21
AoxI GGCC 1 cut(s) 66
ApeKI GCWGC 2 cut(s) 881, 1022
ApoI RAATTY 1 cut(s) 965
Asp700I GAANNNNTTC 1 cut(s) 1127
Asp718I GGTACC 1 cut(s) 1087
AspLEI GCGC 2 cut(s) 22, 1249
AspS9I GGNCC 5 cut(s) 1094, 1289, 1438, 1465, 1495
AsuHPI GGTGA 4 cut(s) 287, 356, 990, 1392
AvaII GGWCC 5 cut(s) 1094, 1289, 1438, 1465, 1495
BaeI ACNNNNGTAYC 4 cut(s) 246, 279, 1131, 1164
BanI GGYRCC 2 cut(s) 611, 1087
BarI GAAGNNNNNNTAC 4 cut(s) 361, 393, 1186, 1218
BbrPI CACGTG 1 cut(s) 118
BbvI GCAGC 2 cut(s) 868, 1034
BccI CCATC 3 cut(s) 314, 635, 1403
BceAI ACGGC 4 cut(s) 23, 142, 193, 1085
BcgI CGANNNNNNTGC 2 cut(s) 1282, 1316
BciT130I CCWGG 2 cut(s) 981, 1092
BciVI GTATCC 2 cut(s) 712, 1284
BcoDI GTCTC 4 cut(s) 104, 622, 651, 895
BfmI CTRYAG 1 cut(s) 1035
BfoI RGCGCY 1 cut(s) 23
BfuI GTATCC 2 cut(s) 712, 1284
BisI GCNGC 2 cut(s) 882, 1023
BlsI GCNGC 2 cut(s) 883, 1024
Bme1390I CCNGG 2 cut(s) 981, 1092
Bme18I GGWCC 5 cut(s) 1094, 1289, 1438, 1465, 1495
BmeRI GACNNNNNGTC 1 cut(s) 1346
BmgBI CACGTC 1 cut(s) 1415
BmgT120I GGNCC 5 cut(s) 1094, 1289, 1438, 1465, 1495
BmiI GGNNCC 3 cut(s) 613, 859, 1089
BmrFI CCNGG 2 cut(s) 981, 1092
BmrI ACTGGG 2 cut(s) 98, 1194
BmsI GCATC 6 cut(s) 25, 99, 214, 1142, 1312, 1366
BmuI ACTGGG 2 cut(s) 98, 1194
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BpuEI CTTGAG 4 cut(s) 633, 877, 1299, 1353
BsaAI YACGTR 1 cut(s) 118
BsaI GGTCTC 2 cut(s) 104, 651
BsaJI CCNNGG 3 cut(s) 979, 1083, 1456
BsaWI WCCGGW 2 cut(s) 140, 1492
BsaXI ACNNNNNCTCC 2 cut(s) 975, 1005
Bsc4I CCNNNNNNNGG 4 cut(s) 320, 1115, 1226, 1462
Bse1I ACTGG 5 cut(s) 104, 834, 1189, 1361, 1441
BseAI TCCGGA 1 cut(s) 140
BseBI CCWGG 2 cut(s) 981, 1092
BseDI CCNNGG 3 cut(s) 979, 1083, 1456
BseGI GGATG 7 cut(s) 207, 643, 667, 731, 1133, 1303, 1357
BseLI CCNNNNNNNGG 4 cut(s) 320, 1115, 1226, 1462
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 5 cut(s) 104, 834, 1189, 1361, 1441
BseXI GCAGC 2 cut(s) 868, 1034
BsgI GTGCAG 2 cut(s) 28, 1395
BshFI GGCC 1 cut(s) 68
BshNI GGYRCC 2 cut(s) 611, 1087
BsiSI CCGG 2 cut(s) 141, 1493
BslI CCNNNNNNNGG 4 cut(s) 320, 1115, 1226, 1462
BsmAI GTCTC 4 cut(s) 104, 622, 651, 895
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 1 cut(s) 68
Bso31I GGTCTC 2 cut(s) 104, 651
Bsp13I TCCGGA 1 cut(s) 140
Bsp143I GATC 3 cut(s) 763, 927, 1118
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 566
BspEI TCCGGA 1 cut(s) 140
BspLI GGNNCC 3 cut(s) 613, 859, 1089
BspMAI CTGCAG 1 cut(s) 1039
BspPI GGATC 3 cut(s) 758, 922, 1126
BspT107I GGYRCC 2 cut(s) 611, 1087
BspTNI GGTCTC 2 cut(s) 104, 651
BsrI ACTGG 5 cut(s) 104, 834, 1189, 1361, 1441
BssECI CCNNGG 3 cut(s) 979, 1083, 1456
BssMI GATC 3 cut(s) 763, 927, 1118
BssT1I CCWWGG 1 cut(s) 1456
Bst2UI CCWGG 2 cut(s) 981, 1092
Bst4CI ACNGT 5 cut(s) 373, 775, 1002, 1048, 1255
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 3 cut(s) 502, 616, 1054
BstDEI CTNAG 1 cut(s) 553
BstDSI CCRYGG 1 cut(s) 1083
BstEII GGTNACC 1 cut(s) 275
BstF5I GGATG 7 cut(s) 207, 643, 667, 731, 1133, 1303, 1357
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 22, 1249
BstKTI GATC 3 cut(s) 766, 930, 1121
BstMAI GTCTC 4 cut(s) 104, 622, 651, 895
BstMBI GATC 3 cut(s) 763, 927, 1118
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNI CCWGG 2 cut(s) 981, 1092
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 979, 1090
BstSFI CTRYAG 1 cut(s) 1035
BstV1I GCAGC 2 cut(s) 868, 1034
BsuI GTATCC 2 cut(s) 712, 1284
BsuRI GGCC 1 cut(s) 68
BtgI CCRYGG 1 cut(s) 1083
BtrI CACGTC 1 cut(s) 1415
BtsCI GGATG 7 cut(s) 207, 643, 667, 731, 1133, 1303, 1357
BtsI GCAGTG 3 cut(s) 153, 1044, 1204
BtsIMutI CAGTG 6 cut(s) 153, 530, 803, 1044, 1053, 1204
Cac8I GCNNGC 3 cut(s) 502, 616, 1054
CfoI GCGC 2 cut(s) 22, 1249
Cfr13I GGNCC 5 cut(s) 1094, 1289, 1438, 1465, 1495
CsiI ACCWGGT 1 cut(s) 1090
Csp6I GTAC 5 cut(s) 369, 1088, 1140, 1148, 1386
CviAII CATG 8 cut(s) 85, 479, 512, 619, 935, 1057, 1234, 1528
CviQI GTAC 5 cut(s) 369, 1088, 1140, 1148, 1386
DdeI CTNAG 1 cut(s) 553
DpnI GATC 3 cut(s) 765, 929, 1120
DpnII GATC 3 cut(s) 763, 927, 1118
DrdI GACNNNNNNGTC 1 cut(s) 131
DriI GACNNNNNGTC 1 cut(s) 1346
DseDI GACNNNNNNGTC 1 cut(s) 131
Eam1105I GACNNNNNGTC 1 cut(s) 1346
Eco130I CCWWGG 1 cut(s) 1456
Eco147I AGGCCT 1 cut(s) 68
Eco31I GGTCTC 2 cut(s) 104, 651
Eco47I GGWCC 5 cut(s) 1094, 1289, 1438, 1465, 1495
Eco47III AGCGCT 1 cut(s) 21
Eco57I CTGAAG 3 cut(s) 375, 801, 837
Eco72I CACGTG 1 cut(s) 118
Eco91I GGTNACC 1 cut(s) 275
EcoO65I GGTNACC 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 979, 1090
EcoT14I CCWWGG 1 cut(s) 1456
ErhI CCWWGG 1 cut(s) 1456
FaeI CATG 8 cut(s) 88, 482, 515, 622, 938, 1060, 1237, 1531
FalI AAGNNNNNCTT 2 cut(s) 799, 831
FatI CATG 8 cut(s) 84, 478, 511, 618, 934, 1056, 1233, 1527
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 2 cut(s) 882, 1023
FokI GGATG 7 cut(s) 214, 650, 674, 718, 1120, 1290, 1344
Fsp4HI GCNGC 2 cut(s) 882, 1023
GlaI GCGC 2 cut(s) 21, 1248
GluI GCNGC 2 cut(s) 882, 1023
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 1 cut(s) 68
HapII CCGG 2 cut(s) 141, 1493
HhaI GCGC 2 cut(s) 22, 1249
Hin1II CATG 8 cut(s) 88, 482, 515, 622, 938, 1060, 1237, 1531
Hin6I GCGC 2 cut(s) 20, 1247
HinP1I GCGC 2 cut(s) 20, 1247
HincII GTYRAC 1 cut(s) 1425
HindII GTYRAC 1 cut(s) 1425
HinfI GANTC 9 cut(s) 144, 265, 419, 535, 602, 874, 1123, 1426, 1489
HpaII CCGG 2 cut(s) 141, 1493
HphI GGTGA 4 cut(s) 287, 356, 990, 1392
Hpy166II GTNNAC 5 cut(s) 115, 136, 583, 1388, 1425
Hpy188I TCNGA 9 cut(s) 223, 382, 556, 592, 752, 820, 907, 943, 1449
Hpy188III TCNNGA 3 cut(s) 141, 716, 1370
Hpy8I GTNNAC 5 cut(s) 115, 136, 583, 1388, 1425
HpyAV CCTTC 4 cut(s) 115, 433, 441, 777
HpyCH4III ACNGT 5 cut(s) 373, 775, 1002, 1048, 1255
HpyCH4IV ACGT 3 cut(s) 117, 338, 1414
HpyCH4V TGCA 7 cut(s) 9, 90, 460, 1037, 1303, 1357, 1412
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 553
HpySE526I ACGT 3 cut(s) 117, 338, 1414
Hsp92II CATG 8 cut(s) 88, 482, 515, 622, 938, 1060, 1237, 1531
HspAI GCGC 2 cut(s) 20, 1247
Kpn2I TCCGGA 1 cut(s) 140
KpnI GGTACC 1 cut(s) 1091
Kzo9I GATC 3 cut(s) 763, 927, 1118
LmnI GCTCC 1 cut(s) 983
Lsp1109I GCAGC 2 cut(s) 868, 1034
LweI GCATC 6 cut(s) 25, 99, 214, 1142, 1312, 1366
MabI ACCWGGT 1 cut(s) 1090
MaeII ACGT 3 cut(s) 117, 338, 1414
MaeIII GTNAC 5 cut(s) 275, 292, 344, 361, 484
MalI GATC 3 cut(s) 765, 929, 1120
MboI GATC 3 cut(s) 763, 927, 1118
MluCI AATT 6 cut(s) 677, 901, 965, 1174, 1208, 1502
MlyI GAGTC 2 cut(s) 428, 1420
MmeI TCCRAC 2 cut(s) 1096, 1207
MroI TCCGGA 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 1127
MseI TTAA 4 cut(s) 59, 947, 969, 1155
MspA1I CMGCKG 2 cut(s) 317, 881
MspI CCGG 2 cut(s) 141, 1493
MspR9I CCNGG 2 cut(s) 981, 1092
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 2 cut(s) 981, 1092
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 3 cut(s) 763, 927, 1118
NlaIII CATG 8 cut(s) 88, 482, 515, 622, 938, 1060, 1237, 1531
NlaIV GGNNCC 3 cut(s) 613, 859, 1089
NmuCI GTSAC 2 cut(s) 275, 344
PceI AGGCCT 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 1127
PfeI GAWTC 7 cut(s) 144, 265, 535, 602, 874, 1123, 1489
PflFI GACNNNGTC 1 cut(s) 281
PflMI CCANNNNNTGG 3 cut(s) 320, 1115, 1462
PkrI GCNGC 2 cut(s) 883, 1024
PleI GAGTC 2 cut(s) 427, 1420
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 2 cut(s) 427, 1420
Ppu21I YACGTR 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 979, 1090
PspCI CACGTG 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 275
PspGI CCWGG 2 cut(s) 979, 1090
PspN4I GGNNCC 3 cut(s) 613, 859, 1089
PspPI GGNCC 5 cut(s) 1094, 1289, 1438, 1465, 1495
PstI CTGCAG 1 cut(s) 1039
PsyI GACNNNGTC 1 cut(s) 281
PvuII CAGCTG 2 cut(s) 317, 881
RsaI GTAC 5 cut(s) 370, 1089, 1141, 1149, 1387
RsaNI GTAC 5 cut(s) 369, 1088, 1140, 1148, 1386
SaqAI TTAA 4 cut(s) 59, 947, 969, 1155
SatI GCNGC 2 cut(s) 882, 1023
Sau3AI GATC 3 cut(s) 763, 927, 1118
Sau96I GGNCC 5 cut(s) 1094, 1289, 1438, 1465, 1495
SchI GAGTC 2 cut(s) 428, 1420
ScrFI CCNGG 2 cut(s) 981, 1092
SexAI ACCWGGT 1 cut(s) 1090
SfaNI GCATC 6 cut(s) 25, 99, 214, 1142, 1312, 1366
SfcI CTRYAG 1 cut(s) 1035
SinI GGWCC 5 cut(s) 1094, 1289, 1438, 1465, 1495
SmlI CTYRAG 4 cut(s) 648, 892, 1314, 1368
SmoI CTYRAG 4 cut(s) 648, 892, 1314, 1368
Sse9I AATT 6 cut(s) 677, 901, 965, 1174, 1208, 1502
SseBI AGGCCT 1 cut(s) 68
StuI AGGCCT 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 979, 1090
StyI CCWWGG 1 cut(s) 1456
TaaI ACNGT 5 cut(s) 373, 775, 1002, 1048, 1255
TaiI ACGT 3 cut(s) 120, 341, 1417
TaqI TCGA 2 cut(s) 108, 1121
TaqII GACCGA 1 cut(s) 1306
TasI AATT 6 cut(s) 677, 901, 965, 1174, 1208, 1502
TfiI GAWTC 7 cut(s) 144, 265, 535, 602, 874, 1123, 1489
Tru1I TTAA 4 cut(s) 59, 947, 969, 1155
Tru9I TTAA 4 cut(s) 59, 947, 969, 1155
TscAI CASTG 6 cut(s) 160, 537, 803, 1044, 1053, 1204
TseFI GTSAC 2 cut(s) 275, 344
TseI GCWGC 2 cut(s) 881, 1022
Tsp45I GTSAC 2 cut(s) 275, 344
TspDTI ATGAA 6 cut(s) 45, 186, 467, 635, 1502, 1516
TspGWI ACGGA 1 cut(s) 214
TspRI CASTG 6 cut(s) 160, 537, 803, 1044, 1053, 1204
Tth111I GACNNNGTC 1 cut(s) 281
Van91I CCANNNNNTGG 3 cut(s) 320, 1115, 1462
VpaK11BI GGWCC 5 cut(s) 1094, 1289, 1438, 1465, 1495
XapI RAATTY 1 cut(s) 965
XcmI CCANNNNNNNNNTGG 2 cut(s) 1081, 1112
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.