Rh3CG071700

Ataxin 2 SM domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
Physical Location & Seq
Forward (+)
5140519 .. 5145196
4678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG071700.1

Sequence Viewer

Length: 348 bp
ATGAATACGAAAGCAAGGATGACTAAAAAGGGAAAATCTGATGCGAATGTAGCAAATGGGGAGTTGATAGATACTCTTGTGATTCTTTCTGGTGACCTTGTCCAAGTTGTTACAAAGGGAGTTTTACTTCCAGCTGATGGTGTTGCTGGAAATATGTCTGGTGACAGAACTAAAGCTATTATGGGTACTCCTCATTTGAAAGCTAAGATGACTTGGCTACTGCTTATTGGTGGGACATGTGTGGGTGTGAATGTTAAGGACCACCAGAGGTTTACCAATGCAGAAAAGATGAGCCTGAATGACAGGCAACTTGCTGCACAGCTTATTCAGAGGGTGCTAGATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

115

Amino Acids

12.32

Weight (kDa)

9.66

Isoelectric Point (pI)

16.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 137
AfaI GTAC 1 cut(s) 187
AfiI CCNNNNNNNGG 1 cut(s) 137
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 1 cut(s) 199
AluBI AGCT 4 cut(s) 134, 176, 203, 322
AluI AGCT 4 cut(s) 134, 176, 203, 322
ApeKI GCWGC 1 cut(s) 314
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 2 cut(s) 104, 173
AvaII GGWCC 1 cut(s) 259
BaeI ACNNNNGTAYC 2 cut(s) 63, 96
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 131
BfaI CTAG 1 cut(s) 338
BisI GCNGC 1 cut(s) 315
BlsI GCNGC 1 cut(s) 316
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmsI GCATC 1 cut(s) 31
Bsc4I CCNNNNNNNGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 137
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 1 cut(s) 301
BsgI GTGCAG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 137
BsmFI GGGAC 1 cut(s) 247
BstDEI CTNAG 1 cut(s) 204
BstEII GGTNACC 1 cut(s) 92
BstF5I GGATG 1 cut(s) 24
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNSI RCATGY 1 cut(s) 240
BstPI GGTNACC 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 301
BtsCI GGATG 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 186
CviAII CATG 1 cut(s) 237
CviJI RGCY 6 cut(s) 134, 176, 203, 217, 294, 322
CviKI_1 RGCY 6 cut(s) 134, 176, 203, 217, 294, 322
CviQI GTAC 1 cut(s) 186
DdeI CTNAG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 259
Eco91I GGTNACC 1 cut(s) 92
EcoO65I GGTNACC 1 cut(s) 92
FaeI CATG 1 cut(s) 240
FaiI YATR 3 cut(s) 155, 182, 238
FaqI GGGAC 1 cut(s) 247
FatI CATG 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 315
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 315
FspBI CTAG 1 cut(s) 338
GluI GCNGC 1 cut(s) 315
Hin1II CATG 1 cut(s) 240
HinfI GANTC 2 cut(s) 82, 341
HphI GGTGA 2 cut(s) 104, 173
Hpy166II GTNNAC 1 cut(s) 273
Hpy188I TCNGA 2 cut(s) 40, 330
Hpy188III TCNNGA 1 cut(s) 345
Hpy8I GTNNAC 1 cut(s) 273
HpyCH4V TGCA 2 cut(s) 281, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 204
Hsp92II CATG 1 cut(s) 240
LpnPI CCDG 7 cut(s) 75, 132, 144, 144, 278, 289, 308
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 338
MaeIII GTNAC 3 cut(s) 92, 109, 161
MnlI CCTC 3 cut(s) 201, 261, 324
MseI TTAA 1 cut(s) 255
MspA1I CMGCKG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 50
NlaIII CATG 1 cut(s) 240
NmuCI GTSAC 2 cut(s) 92, 161
NspI RCATGY 1 cut(s) 240
PciI ACATGT 1 cut(s) 236
PfeI GAWTC 2 cut(s) 82, 341
PflFI GACNNNGTC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 137
PkrI GCNGC 1 cut(s) 316
PscI ACATGT 1 cut(s) 236
PspEI GGTNACC 1 cut(s) 92
PspPI GGNCC 1 cut(s) 259
PsyI GACNNNGTC 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 134
RsaI GTAC 1 cut(s) 187
RsaNI GTAC 1 cut(s) 186
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 1 cut(s) 315
Sau96I GGNCC 1 cut(s) 259
SetI ASST 6 cut(s) 99, 136, 178, 205, 272, 324
SfaNI GCATC 1 cut(s) 31
SinI GGWCC 1 cut(s) 259
SspMI CTAG 1 cut(s) 338
TfiI GAWTC 2 cut(s) 82, 341
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TseFI GTSAC 2 cut(s) 92, 161
TseI GCWGC 1 cut(s) 314
Tsp45I GTSAC 2 cut(s) 92, 161
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 98
Van91I CCANNNNNTGG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 259
XceI RCATGY 1 cut(s) 240
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.