Rh2CG337800

Ataxin 2 SM domain

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Reverse (-)
44901433 .. 44906447
5015 bp
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UTR
Exon/CDS
Intron
Rh2CG337800.1

Sequence Viewer

Length: 387 bp
ATGATCCACTCTTATATTCAGGGATTGGGAGGGTCAAATCTCCAGGTTGTAATGGCTGGATTCCCTAAGACCGAATGCCCCCATCCTCAGGGAGTTTTACTTCCAGTTGATGGTGTTGCTGGAAATATGTCTGGTGACAGAATTGAAGTTGTTATGGGTACTGTTTCTTCTGATGAGTGTTCAAAGAATGGTGCGAAGAAGTCAAGTGAGTCTGCCATAAATAAGAAGAAGGGTGGAGGGGTGCTAATGCAAAATGGGAATAGCTTTCATGGTGTTACACCCACAAAGGCTGGCAAGGAACATGGAGAGTTTGCACTGGAGTCGAGGATGGTTATGGAAGGGGGCGGATTAGGAGATTGCAGTTTCGAGAAGGAGATTGCAATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

128

Amino Acids

13.28

Weight (kDa)

6.06

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 110
AciI CCGC 1 cut(s) 345
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 2 cut(s) 88, 110
AgsI TTSAA 2 cut(s) 146, 183
AjnI CCWGG 1 cut(s) 42
AluBI AGCT 1 cut(s) 264
AluI AGCT 1 cut(s) 264
AsuHPI GGTGA 1 cut(s) 146
AxyI CCTNAGG 1 cut(s) 87
BarI GAAGNNNNNNTAC 2 cut(s) 151, 183
BccI CCATC 3 cut(s) 90, 104, 322
BcgI CGANNNNNNTGC 2 cut(s) 303, 337
BciT130I CCWGG 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 44
BpmI CTGGAG 2 cut(s) 26, 338
BsaBI GATNNNNATC 1 cut(s) 380
Bsc4I CCNNNNNNNGG 2 cut(s) 88, 110
Bse1I ACTGG 2 cut(s) 104, 321
Bse21I CCTNAGG 1 cut(s) 87
Bse8I GATNNNNATC 1 cut(s) 380
BseBI CCWGG 1 cut(s) 44
BseGI GGATG 2 cut(s) 82, 333
BseJI GATNNNNATC 1 cut(s) 380
BseLI CCNNNNNNNGG 2 cut(s) 88, 110
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 2 cut(s) 104, 321
BslI CCNNNNNNNGG 2 cut(s) 88, 110
BsmI GAATGC 1 cut(s) 80
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 345
BspCNI CTCAG 1 cut(s) 100
BsrI ACTGG 2 cut(s) 104, 321
BssMI GATC 1 cut(s) 3
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 66, 87
BstF5I GGATG 2 cut(s) 82, 333
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
Bsu36I CCTNAGG 1 cut(s) 87
BtsCI GGATG 2 cut(s) 82, 333
BtsIMutI CAGTG 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 292
Csp6I GTAC 1 cut(s) 159
CviAII CATG 2 cut(s) 269, 302
CviJI RGCY 3 cut(s) 56, 264, 290
CviKI_1 RGCY 3 cut(s) 56, 264, 290
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 2 cut(s) 66, 87
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EciI GGCGGA 1 cut(s) 360
Eco81I CCTNAGG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 42
FaeI CATG 2 cut(s) 272, 305
FaiI YATR 7 cut(s) 15, 128, 155, 218, 270, 303, 335
FatI CATG 2 cut(s) 268, 301
FokI GGATG 2 cut(s) 69, 340
GsuI CTGGAG 2 cut(s) 26, 338
Hin1II CATG 2 cut(s) 272, 305
HinfI GANTC 3 cut(s) 60, 209, 320
HphI GGTGA 1 cut(s) 146
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 367
HpyAV CCTTC 3 cut(s) 223, 332, 364
HpyCH4III ACNGT 1 cut(s) 163
HpyCH4V TGCA 4 cut(s) 250, 314, 360, 380
HpyF3I CTNAG 2 cut(s) 66, 87
Hsp92II CATG 2 cut(s) 272, 305
Kzo9I GATC 1 cut(s) 3
MaeIII GTNAC 2 cut(s) 134, 274
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 3 cut(s) 159, 208, 238
MluCI AATT 1 cut(s) 141
MlyI GAGTC 2 cut(s) 218, 329
MnlI CCTC 4 cut(s) 23, 96, 230, 318
MspR9I CCNGG 1 cut(s) 44
Mva1269I GAATGC 1 cut(s) 80
MvaI CCWGG 1 cut(s) 44
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 272, 305
NmuCI GTSAC 1 cut(s) 134
PctI GAATGC 1 cut(s) 80
PfeI GAWTC 1 cut(s) 60
PflMI CCANNNNNTGG 1 cut(s) 110
PleI GAGTC 2 cut(s) 217, 328
PpsI GAGTC 2 cut(s) 217, 328
Psp6I CCWGG 1 cut(s) 42
PspGI CCWGG 1 cut(s) 42
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 3
SchI GAGTC 2 cut(s) 218, 329
ScrFI CCNGG 1 cut(s) 44
SetI ASST 2 cut(s) 48, 266
Sse9I AATT 1 cut(s) 141
SsiI CCGC 1 cut(s) 345
StyD4I CCNGG 1 cut(s) 42
TaaI ACNGT 1 cut(s) 163
TaqI TCGA 2 cut(s) 323, 366
TaqII GACCGA 1 cut(s) 86
TasI AATT 1 cut(s) 141
TfiI GAWTC 1 cut(s) 60
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 134
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 1 cut(s) 321
Van91I CCANNNNNTGG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.