RLG00000033903

Ataxin 2 SM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0001651
Physical Location & Seq
Forward (+)
33972857 .. 33978660
5804 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033903

Sequence Viewer

Length: 1578 bp
ATGGGGTGCAGAAACAGAGAGCTCACAGAAGATGATGCCGTTTCTTCTTCTTCTTCATTAAGCGAGGCCTTGCTGTTTGCGACCATGTGCATCATTGGTCTCCCGGTCGATGTTCACGTCAAGGACGGCTCTGTCTACTCCGGAATCTTCCACACTGCTTCTGTGGAAAATGAATACGGCATTGTTTTGAAGAAAGCAAGGATGACTAAAAAGGGAAAATCTGATGCGAATGTAGCAAATGGGGAGTTGATAGATACTCTTGTGATTCTTTCTGGTGATCTTGTCCAAGTTGTTGCAAAGGGAGTTTTACTTCCAGCTGATGGTGTTGCTGGAAATATGTCTGGTGACAGAACTGAAGCTGTTATGGGTACTGTTTCTTCTGATGAGTGTTCAAAGAATGGTGCGAAGAAGTCAAGTGAGTCTGCCATAAATAAGAAGAAGGGTGGAAGGGTGATAATGCAAAATGGGAATGGCTTTCATGGTGTTACACCCACAAGGGCTGGCAAGGAACATGGAGGGAGGAATATGCCACTGAATCATATTGAGAATGCCTCAGAACTTGAAAATAAGAGAAGTGATGAGGTAAACTTATCAGAGATTAGAGAATCCTCTGGTGCCAGCATGAACAGGAGACAGGTGGATGATGGGTCGCAAGGGAAGCAGGATGATTTCAACCAGAAATTAGAGGTTTATAGCAAAGAAAGTGCTGACAAAGTTCAGGATACAAAGATGACATCCAAGCTCTTCCCTTTCAGAGTATCTTGTGATCCTTCTACTGTAATAGTTCAACAAGACATTCAGTGCTGTGAAAGGACAACTTCAGAATACACTTCTTCCAGTTCAAATGTTGTTTCTTCAGGTTCCTCAACTTTGTTGAATCCAGCTGCTAATGTCTCAAGTCGTAATTCAGAAACAACATCAACTGAAATGATCCCTCATGGTTCAGAGTTAAATAAAAGTGGCAAGGAATTTAAGCTCAACCCAGGAGCAAAAGTATTCTCGCCATCTTTTACAAAGCCCATAGCAGCCACCTCTCCTGCAGTGCCAACAGTGGCAAACATGGGTTTTATACCAACCAACTGCCCCGTGGTACCTGGTCCTGCCATCCAGCCAGAAGTTGGATCGAATCCTTTCACATCCCGTACATCTGTGCCTGTTAAGGTTCTCCCATACAATAATTTCACAACTGGGAATGGTAGCAGTGCTTCTCAATTTTCACAACCTATTGTTGGACACATGAGCAGTAGGGCGCAGACAGTTAGGTATGCTGGTCAGTATCCTGTTCAGGCTGGACCGACCTATGTGCATCCAAATACTCAAGCTGTTATGGTAGGACGATTTGGACAGCTTGTCTATGTGCATCCAGTTTCTCAAGATTTGGTTCAGGGTACACCTGCCATCTCACCACTATCTGCACGTCCTATGTTGACTCCACATCAGGTCCAGTTTCCGAAGCACCAAGGAACTGCAGGCCAAGCATTGCAGCTGTGTGTGCCTCCACAGTTCATGGCTACTGGACAGCAGCCTTTTCCCATTGCCAAGTCGCATCCGATTTTTGCAACCTCCCTTCCGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

526

Amino Acids

55.85

Weight (kDa)

8.31

Isoelectric Point (pI)

40.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SM-ATX PF14438 22 - 100 4.5e-26 Ataxin 2 SM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1402
AasI GACNNNNNNGTC 1 cut(s) 131
Acc36I ACCTGC 1 cut(s) 1402
Acc65I GGTACC 1 cut(s) 1090
AccB1I GGYRCC 2 cut(s) 614, 1090
AccB7I CCANNNNNTGG 2 cut(s) 320, 1118
AccI GTMKAC 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 140
AclWI GGATC 3 cut(s) 761, 925, 1129
AcsI RAATTY 1 cut(s) 968
AcuI CTGAAG 3 cut(s) 375, 804, 840
AfaI GTAC 4 cut(s) 370, 1092, 1144, 1390
AfiI CCNNNNNNNGG 3 cut(s) 320, 1118, 1229
AgsI TTSAA 7 cut(s) 190, 393, 563, 673, 788, 843, 877
AhdI GACNNNNNGTC 1 cut(s) 1349
AjiI CACGTC 2 cut(s) 118, 1418
AjnI CCWGG 2 cut(s) 982, 1093
AluBI AGCT 9 cut(s) 22, 317, 359, 742, 884, 976, 1322, 1348, 1486
AluI AGCT 9 cut(s) 22, 317, 359, 742, 884, 976, 1322, 1348, 1486
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 3 cut(s) 104, 625, 898
AlwI GGATC 3 cut(s) 761, 925, 1129
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 2 cut(s) 66, 1471
ApeKI GCWGC 4 cut(s) 884, 1025, 1483, 1522
ApoI RAATTY 1 cut(s) 968
Asp700I GAANNNNTTC 1 cut(s) 1130
Asp718I GGTACC 1 cut(s) 1090
AspLEI GCGC 1 cut(s) 1252
AspS9I GGNCC 3 cut(s) 1097, 1292, 1441
AsuC2I CCSGG 1 cut(s) 104
AsuHPI GGTGA 4 cut(s) 287, 356, 463, 1395
AvaII GGWCC 3 cut(s) 1097, 1292, 1441
BaeI ACNNNNGTAYC 2 cut(s) 246, 279
BanI GGYRCC 2 cut(s) 614, 1090
BanII GRGCYC 1 cut(s) 24
BarI GAAGNNNNNNTAC 4 cut(s) 361, 393, 1189, 1221
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 4 cut(s) 871, 1037, 1495, 1534
BccI CCATC 5 cut(s) 314, 638, 1012, 1112, 1406
BceAI ACGGC 3 cut(s) 23, 142, 193
BcgI CGANNNNNNTGC 2 cut(s) 1285, 1319
BciT130I CCWGG 2 cut(s) 984, 1095
BciVI GTATCC 2 cut(s) 715, 1287
BcnI CCSGG 1 cut(s) 104
BcoDI GTCTC 3 cut(s) 104, 625, 898
BfmI CTRYAG 2 cut(s) 1038, 1467
BfuAI ACCTGC 1 cut(s) 1402
BfuI GTATCC 2 cut(s) 715, 1287
BisI GCNGC 4 cut(s) 885, 1026, 1484, 1523
BlsI GCNGC 4 cut(s) 886, 1027, 1485, 1524
Bme1390I CCNGG 3 cut(s) 104, 984, 1095
Bme18I GGWCC 3 cut(s) 1097, 1292, 1441
BmeRI GACNNNNNGTC 1 cut(s) 1349
BmgBI CACGTC 2 cut(s) 118, 1418
BmgT120I GGNCC 3 cut(s) 1097, 1292, 1441
BmiI GGNNCC 3 cut(s) 616, 862, 1092
BmrFI CCNGG 3 cut(s) 104, 984, 1095
BmrI ACTGGG 1 cut(s) 1197
BmsI GCATC 6 cut(s) 25, 99, 214, 1315, 1369, 1555
BmuI ACTGGG 1 cut(s) 1197
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BpuEI CTTGAG 3 cut(s) 880, 1302, 1356
BpuMI CCSGG 1 cut(s) 104
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 3 cut(s) 982, 1086, 1459
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 978, 1008
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 1118, 1229
Bse1I ACTGG 5 cut(s) 837, 1192, 1364, 1444, 1519
Bse3DI GCAATG 2 cut(s) 1478, 1533
BseAI TCCGGA 1 cut(s) 140
BseBI CCWGG 2 cut(s) 984, 1095
BseDI CCNNGG 3 cut(s) 982, 1086, 1459
BseGI GGATG 9 cut(s) 207, 646, 670, 734, 1104, 1136, 1306, 1360, 1546
BseLI CCNNNNNNNGG 3 cut(s) 320, 1118, 1229
BseMI GCAATG 2 cut(s) 1478, 1533
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 5 cut(s) 837, 1192, 1364, 1444, 1519
BseXI GCAGC 4 cut(s) 871, 1037, 1495, 1534
BsgI GTGCAG 2 cut(s) 28, 1398
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 2 cut(s) 68, 1473
BshNI GGYRCC 2 cut(s) 614, 1090
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 2 cut(s) 104, 141
BslI CCNNNNNNNGG 3 cut(s) 320, 1118, 1229
BsmAI GTCTC 3 cut(s) 104, 625, 898
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 2 cut(s) 68, 1473
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 24
Bsp13I TCCGGA 1 cut(s) 140
Bsp143I GATC 4 cut(s) 277, 766, 930, 1121
BspANI GGCC 2 cut(s) 68, 1473
BspCNI CTCAG 1 cut(s) 566
BspEI TCCGGA 1 cut(s) 140
BspLI GGNNCC 3 cut(s) 616, 862, 1092
BspMAI CTGCAG 2 cut(s) 1042, 1471
BspMI ACCTGC 1 cut(s) 1402
BspPI GGATC 3 cut(s) 761, 925, 1129
BspQI GCTCTTC 1 cut(s) 749
BspT107I GGYRCC 2 cut(s) 614, 1090
BspTNI GGTCTC 1 cut(s) 104
BsrDI GCAATG 2 cut(s) 1478, 1533
BsrI ACTGG 5 cut(s) 837, 1192, 1364, 1444, 1519
BssECI CCNNGG 3 cut(s) 982, 1086, 1459
BssMI GATC 4 cut(s) 277, 766, 930, 1121
BssT1I CCWWGG 1 cut(s) 1459
Bst2UI CCWGG 2 cut(s) 984, 1095
Bst4CI ACNGT 5 cut(s) 373, 778, 1051, 1258, 1503
Bst6I CTCTTC 1 cut(s) 749
BstC8I GCNNGC 3 cut(s) 502, 619, 1471
BstDEI CTNAG 1 cut(s) 553
BstDSI CCRYGG 1 cut(s) 1086
BstF5I GGATG 9 cut(s) 207, 646, 670, 734, 1104, 1136, 1306, 1360, 1546
BstHHI GCGC 1 cut(s) 1252
BstKTI GATC 4 cut(s) 280, 769, 933, 1124
BstMAI GTCTC 3 cut(s) 104, 625, 898
BstMBI GATC 4 cut(s) 277, 766, 930, 1121
BstMCI CGRYCG 1 cut(s) 108
BstMWI GCNNNNNNNGC 4 cut(s) 233, 658, 1475, 1492
BstNI CCWGG 2 cut(s) 984, 1095
BstSCI CCNGG 3 cut(s) 102, 982, 1093
BstSFI CTRYAG 2 cut(s) 1038, 1467
BstV1I GCAGC 4 cut(s) 871, 1037, 1495, 1534
BsuI GTATCC 2 cut(s) 715, 1287
BsuRI GGCC 2 cut(s) 68, 1473
BtgI CCRYGG 1 cut(s) 1086
BtrI CACGTC 2 cut(s) 118, 1418
BtsCI GGATG 9 cut(s) 207, 646, 670, 734, 1104, 1136, 1306, 1360, 1546
BtsI GCAGTG 3 cut(s) 153, 1047, 1207
BtsIMutI CAGTG 6 cut(s) 153, 530, 806, 1047, 1056, 1207
BveI ACCTGC 1 cut(s) 1402
Cac8I GCNNGC 3 cut(s) 502, 619, 1471
CfoI GCGC 1 cut(s) 1252
Cfr13I GGNCC 3 cut(s) 1097, 1292, 1441
CsiI ACCWGGT 1 cut(s) 1093
Csp6I GTAC 4 cut(s) 369, 1091, 1143, 1389
CviAII CATG 8 cut(s) 85, 479, 512, 622, 938, 1060, 1237, 1507
CviQI GTAC 4 cut(s) 369, 1091, 1143, 1389
DdeI CTNAG 1 cut(s) 553
DpnI GATC 4 cut(s) 279, 768, 932, 1123
DpnII GATC 4 cut(s) 277, 766, 930, 1121
DrdI GACNNNNNNGTC 1 cut(s) 131
DriI GACNNNNNGTC 1 cut(s) 1349
DseDI GACNNNNNNGTC 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 749
Eam1105I GACNNNNNGTC 1 cut(s) 1349
EarI CTCTTC 1 cut(s) 749
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 1459
Eco147I AGGCCT 1 cut(s) 68
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 3 cut(s) 1097, 1292, 1441
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 3 cut(s) 375, 804, 840
EcoICRI GAGCTC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 982, 1093
EcoT14I CCWWGG 1 cut(s) 1459
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 1459
FaeI CATG 8 cut(s) 88, 482, 515, 625, 941, 1063, 1240, 1510
FalI AAGNNNNNCTT 2 cut(s) 802, 834
FatI CATG 8 cut(s) 84, 478, 511, 621, 937, 1059, 1236, 1506
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 885, 1026, 1484, 1523
FokI GGATG 9 cut(s) 214, 653, 677, 721, 1091, 1123, 1293, 1347, 1533
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 4 cut(s) 885, 1026, 1484, 1523
GlaI GCGC 1 cut(s) 1251
GluI GCNGC 4 cut(s) 885, 1026, 1484, 1523
HaeIII GGCC 2 cut(s) 68, 1473
HapII CCGG 2 cut(s) 104, 141
HhaI GCGC 1 cut(s) 1252
Hin1II CATG 8 cut(s) 88, 482, 515, 625, 941, 1063, 1240, 1510
Hin6I GCGC 1 cut(s) 1250
HinP1I GCGC 1 cut(s) 1250
HincII GTYRAC 1 cut(s) 1428
HindII GTYRAC 1 cut(s) 1428
HinfI GANTC 8 cut(s) 144, 265, 419, 535, 605, 877, 1126, 1429
HpaII CCGG 2 cut(s) 104, 141
HphI GGTGA 4 cut(s) 287, 356, 463, 1395
Hpy166II GTNNAC 5 cut(s) 115, 136, 586, 1391, 1428
Hpy188III TCNNGA 3 cut(s) 141, 719, 1373
Hpy8I GTNNAC 5 cut(s) 115, 136, 586, 1391, 1428
HpyAV CCTTC 4 cut(s) 433, 441, 780, 1577
HpyCH4III ACNGT 5 cut(s) 373, 778, 1051, 1258, 1503
HpyCH4IV ACGT 2 cut(s) 117, 1417
HpyF10VI GCNNNNNNNGC 4 cut(s) 233, 658, 1475, 1492
HpyF3I CTNAG 1 cut(s) 553
HpySE526I ACGT 2 cut(s) 117, 1417
Hsp92II CATG 8 cut(s) 88, 482, 515, 625, 941, 1063, 1240, 1510
HspAI GCGC 1 cut(s) 1250
Kpn2I TCCGGA 1 cut(s) 140
KpnI GGTACC 1 cut(s) 1094
Kzo9I GATC 4 cut(s) 277, 766, 930, 1121
LguI GCTCTTC 1 cut(s) 749
LmnI GCTCC 1 cut(s) 986
Lsp1109I GCAGC 4 cut(s) 871, 1037, 1495, 1534
LweI GCATC 6 cut(s) 25, 99, 214, 1315, 1369, 1555
MabI ACCWGGT 1 cut(s) 1093
MaeII ACGT 2 cut(s) 117, 1417
MaeIII GTNAC 2 cut(s) 344, 484
MalI GATC 4 cut(s) 279, 768, 932, 1123
MboI GATC 4 cut(s) 277, 766, 930, 1121
MhlI GDGCHC 1 cut(s) 24
MluCI AATT 5 cut(s) 680, 904, 968, 1177, 1211
MlyI GAGTC 2 cut(s) 428, 1423
MmeI TCCRAC 2 cut(s) 1099, 1210
MroI TCCGGA 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 1130
MseI TTAA 4 cut(s) 59, 950, 972, 1158
MspA1I CMGCKG 3 cut(s) 317, 884, 1486
MspI CCGG 2 cut(s) 104, 141
MspR9I CCNGG 3 cut(s) 104, 984, 1095
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 2 cut(s) 984, 1095
MwoI GCNNNNNNNGC 4 cut(s) 233, 658, 1475, 1492
NciI CCSGG 1 cut(s) 104
NdeII GATC 4 cut(s) 277, 766, 930, 1121
NlaIII CATG 8 cut(s) 88, 482, 515, 625, 941, 1063, 1240, 1510
NlaIV GGNNCC 3 cut(s) 616, 862, 1092
NmuCI GTSAC 1 cut(s) 344
PaqCI CACCTGC 1 cut(s) 1402
PceI AGGCCT 1 cut(s) 68
PciSI GCTCTTC 1 cut(s) 749
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 1130
PfeI GAWTC 6 cut(s) 144, 265, 535, 605, 877, 1126
PflMI CCANNNNNTGG 2 cut(s) 320, 1118
PkrI GCNGC 4 cut(s) 886, 1027, 1485, 1524
PleI GAGTC 2 cut(s) 427, 1423
PpsI GAGTC 2 cut(s) 427, 1423
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 982, 1093
PspGI CCWGG 2 cut(s) 982, 1093
PspN4I GGNNCC 3 cut(s) 616, 862, 1092
PspPI GGNCC 3 cut(s) 1097, 1292, 1441
PstI CTGCAG 2 cut(s) 1042, 1471
PvuII CAGCTG 3 cut(s) 317, 884, 1486
RsaI GTAC 4 cut(s) 370, 1092, 1144, 1390
RsaNI GTAC 4 cut(s) 369, 1091, 1143, 1389
SacI GAGCTC 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 749
SaqAI TTAA 4 cut(s) 59, 950, 972, 1158
SatI GCNGC 4 cut(s) 885, 1026, 1484, 1523
Sau3AI GATC 4 cut(s) 277, 766, 930, 1121
Sau96I GGNCC 3 cut(s) 1097, 1292, 1441
SchI GAGTC 2 cut(s) 428, 1423
ScrFI CCNGG 3 cut(s) 104, 984, 1095
SduI GDGCHC 1 cut(s) 24
SexAI ACCWGGT 1 cut(s) 1093
SfaNI GCATC 6 cut(s) 25, 99, 214, 1315, 1369, 1555
SfcI CTRYAG 2 cut(s) 1038, 1467
SinI GGWCC 3 cut(s) 1097, 1292, 1441
SmlI CTYRAG 3 cut(s) 895, 1317, 1371
SmoI CTYRAG 3 cut(s) 895, 1317, 1371
Sse9I AATT 5 cut(s) 680, 904, 968, 1177, 1211
SseBI AGGCCT 1 cut(s) 68
SstI GAGCTC 1 cut(s) 24
StuI AGGCCT 1 cut(s) 68
StyD4I CCNGG 3 cut(s) 102, 982, 1093
StyI CCWWGG 1 cut(s) 1459
TaaI ACNGT 5 cut(s) 373, 778, 1051, 1258, 1503
TaiI ACGT 2 cut(s) 120, 1420
TaqI TCGA 2 cut(s) 108, 1124
TaqII GACCGA 1 cut(s) 1309
TasI AATT 5 cut(s) 680, 904, 968, 1177, 1211
TfiI GAWTC 6 cut(s) 144, 265, 535, 605, 877, 1126
Tru1I TTAA 4 cut(s) 59, 950, 972, 1158
Tru9I TTAA 4 cut(s) 59, 950, 972, 1158
TscAI CASTG 6 cut(s) 160, 537, 806, 1047, 1056, 1207
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 4 cut(s) 884, 1025, 1483, 1522
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 5 cut(s) 45, 186, 467, 638, 1495
TspGWI ACGGA 1 cut(s) 1560
TspRI CASTG 6 cut(s) 160, 537, 806, 1047, 1056, 1207
Van91I CCANNNNNTGG 2 cut(s) 320, 1118
VpaK11BI GGWCC 3 cut(s) 1097, 1292, 1441
XapI RAATTY 1 cut(s) 968
XcmI CCANNNNNNNNNTGG 2 cut(s) 1084, 1115
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.