RLG00000014150

Ataxin 2 SM domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
48165156 .. 48167321
2166 bp
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UTR
Exon/CDS
Intron
RLM00000014150

Sequence Viewer

Length: 342 bp
ATGACTAAAAAGGGAAAATCTGATGTGAATGTAGCAAATGGGGAGTTGATAGATACTCTTGTTATTCTTTATGGTGACCTTGTCCAAGTTGTTACAAAGGGAGTTTTACTTCCAGCTGATGGTGTTGCTGGAAATATGTCTGGTGACAGAACTGAAGCTGTTATGGGTACTATTTCTTTTGATGAGTGTTCAAAGAATAGTGTGAAGAAGTCAAGTGAGTCTTCCATAAATAAGAAGAAGGGTGGAAGAAAGGTGGCAAGGTACTTGCTCAGGCACGTTACAGAACTTGTTGGAGGTTGCACAATGAAGAGCCAAGAAAGAAAGTGCAAGGCTATTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.1

Weight (kDa)

9.48

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 119
AcuI CTGAAG 1 cut(s) 174
AfaI GTAC 2 cut(s) 169, 263
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 1 cut(s) 192
AluBI AGCT 2 cut(s) 116, 158
AluI AGCT 2 cut(s) 116, 158
AsuHPI GGTGA 2 cut(s) 86, 155
BaeI ACNNNNGTAYC 2 cut(s) 45, 78
BbsI GAAGAC 1 cut(s) 213
BccI CCATC 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 269
Bsc4I CCNNNNNNNGG 1 cut(s) 119
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMII CTCAG 1 cut(s) 283
BslI CCNNNNNNNGG 1 cut(s) 119
BspCNI CTCAG 1 cut(s) 282
BspQI GCTCTTC 1 cut(s) 302
Bst6I CTCTTC 1 cut(s) 302
BstDEI CTNAG 1 cut(s) 269
BstEII GGTNACC 1 cut(s) 74
BstPI GGTNACC 1 cut(s) 74
BstV2I GAAGAC 1 cut(s) 213
Csp6I GTAC 2 cut(s) 168, 262
CviJI RGCY 4 cut(s) 116, 158, 312, 332
CviKI_1 RGCY 4 cut(s) 116, 158, 312, 332
CviQI GTAC 2 cut(s) 168, 262
DdeI CTNAG 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
Eco57I CTGAAG 1 cut(s) 174
Eco91I GGTNACC 1 cut(s) 74
EcoO65I GGTNACC 1 cut(s) 74
FaiI YATR 5 cut(s) 72, 137, 164, 227, 340
FalI AAGNNNNNCTT 2 cut(s) 205, 237
HinfI GANTC 1 cut(s) 218
HphI GGTGA 2 cut(s) 86, 155
Hpy188I TCNGA 1 cut(s) 22
HpyAV CCTTC 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 2 cut(s) 300, 327
HpyF3I CTNAG 1 cut(s) 269
HpySE526I ACGT 1 cut(s) 276
LguI GCTCTTC 1 cut(s) 302
LpnPI CCDG 4 cut(s) 114, 126, 126, 256
MaeII ACGT 1 cut(s) 276
MaeIII GTNAC 4 cut(s) 74, 91, 143, 277
MboII GAAGA 5 cut(s) 213, 217, 247, 258, 319
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 1 cut(s) 287
MspA1I CMGCKG 1 cut(s) 116
NmuCI GTSAC 2 cut(s) 74, 143
PciSI GCTCTTC 1 cut(s) 302
PflFI GACNNNGTC 1 cut(s) 80
PflMI CCANNNNNTGG 1 cut(s) 119
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PspEI GGTNACC 1 cut(s) 74
PsyI GACNNNGTC 1 cut(s) 80
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 2 cut(s) 169, 263
RsaNI GTAC 2 cut(s) 168, 262
SapI GCTCTTC 1 cut(s) 302
SchI GAGTC 1 cut(s) 227
SetI ASST 7 cut(s) 81, 118, 160, 255, 263, 279, 298
TaiI ACGT 1 cut(s) 279
TseFI GTSAC 2 cut(s) 74, 143
Tsp45I GTSAC 2 cut(s) 74, 143
TspDTI ATGAA 1 cut(s) 320
Tth111I GACNNNGTC 1 cut(s) 80
Van91I CCANNNNNTGG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.