Rh3BG073200

Ataxin 2 SM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001651
Physical Location & Seq
Forward (+)
5133391 .. 5141257
7867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG073200.1

Sequence Viewer

Length: 414 bp
ATGAACAGAGGGAACTGGAAGCAGAAGCACTGGAAGGAGCTCCACTTTGCGTTACCCTCACGTTCTTCTTCATCGATTCTCATCATTACTCTCTCTCTCTCTCTCTCTCTCGGCTCTGTCTACTCCGGAATCTTCCACACTGCTTCTGTGGAAAATGAATACGGCATTGTTTTGAAGAAAGCAAGGATGACTAAAAAGGGAAAATCTGATGCGAATGTAGCAAATGGGGAGTTGATAGATACTCTTGTGATTCTTTCTGGTGACCTTGTCCAAGTTGTTACAAAGGGAGTTTTACTTCCAGCTGATGGTGTTGCTGGAAATATGTCTGGTGACAGAACTAAAGCTATTATGGGTACTGTTTCTTCTTATGAGTGTTCAAAGTATGGTGCGAAGAAGTCAAGTGATCTGCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

137

Amino Acids

14.67

Weight (kDa)

9.52

Isoelectric Point (pI)

22.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SM-ATX PF14438 35 - 94 3.3e-16 Ataxin 2 SM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 305
AccI GTMKAC 1 cut(s) 120
AccIII TCCGGA 1 cut(s) 125
AfaI GTAC 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 2 cut(s) 175, 378
AluBI AGCT 3 cut(s) 40, 302, 344
AluI AGCT 3 cut(s) 40, 302, 344
Alw21I GWGCWC 1 cut(s) 42
Aor13HI TCCGGA 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 272, 341
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BanII GRGCYC 1 cut(s) 42
BarI GAAGNNNNNNTAC 2 cut(s) 346, 378
Bbv12I GWGCWC 1 cut(s) 42
BccI CCATC 1 cut(s) 299
BceAI ACGGC 1 cut(s) 178
BmsI GCATC 1 cut(s) 199
Bsa29I ATCGAT 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 80
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse1I ACTGG 2 cut(s) 20, 35
Bse8I GATNNNNATC 1 cut(s) 80
BseAI TCCGGA 1 cut(s) 125
BseCI ATCGAT 1 cut(s) 74
BseGI GGATG 1 cut(s) 192
BseJI GATNNNNATC 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 305
BseNI ACTGG 2 cut(s) 20, 35
BshVI ATCGAT 1 cut(s) 74
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 305
Bsp1286I GDGCHC 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 125
Bsp143I GATC 1 cut(s) 403
BspDI ATCGAT 1 cut(s) 74
BspEI TCCGGA 1 cut(s) 125
BsrI ACTGG 2 cut(s) 20, 35
BssMI GATC 1 cut(s) 403
Bst4CI ACNGT 1 cut(s) 358
BstEII GGTNACC 1 cut(s) 260
BstF5I GGATG 1 cut(s) 192
BstKTI GATC 1 cut(s) 406
BstMBI GATC 1 cut(s) 403
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 260
Bsu15I ATCGAT 1 cut(s) 74
BsuTUI ATCGAT 1 cut(s) 74
BtsCI GGATG 1 cut(s) 192
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 28, 138
ClaI ATCGAT 1 cut(s) 74
Csp6I GTAC 1 cut(s) 354
CviJI RGCY 4 cut(s) 40, 114, 302, 344
CviKI_1 RGCY 4 cut(s) 40, 114, 302, 344
CviQI GTAC 1 cut(s) 354
DpnI GATC 1 cut(s) 405
DpnII GATC 1 cut(s) 403
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 40
Eco91I GGTNACC 1 cut(s) 260
EcoICRI GAGCTC 1 cut(s) 40
EcoO65I GGTNACC 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 42
FaiI YATR 5 cut(s) 323, 350, 369, 384, 412
FblI GTMKAC 1 cut(s) 120
FokI GGATG 1 cut(s) 199
FriOI GRGCYC 1 cut(s) 42
HapII CCGG 1 cut(s) 126
HinfI GANTC 3 cut(s) 76, 129, 250
HpaII CCGG 1 cut(s) 126
HphI GGTGA 2 cut(s) 272, 341
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 1 cut(s) 126
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 61
Kpn2I TCCGGA 1 cut(s) 125
Kzo9I GATC 1 cut(s) 403
LmnI GCTCC 2 cut(s) 37, 45
LpnPI CCDG 6 cut(s) 16, 139, 243, 300, 312, 312
LweI GCATC 1 cut(s) 199
MaeII ACGT 1 cut(s) 61
MaeIII GTNAC 4 cut(s) 51, 260, 277, 329
MalI GATC 1 cut(s) 405
MboI GATC 1 cut(s) 403
MboII GAAGA 6 cut(s) 57, 60, 124, 187, 354, 403
MhlI GDGCHC 1 cut(s) 42
MnlI CCTC 1 cut(s) 67
MroI TCCGGA 1 cut(s) 125
MspA1I CMGCKG 1 cut(s) 302
MspI CCGG 1 cut(s) 126
MwoI GCNNNNNNNGC 1 cut(s) 218
NdeII GATC 1 cut(s) 403
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 2 cut(s) 260, 329
PfeI GAWTC 3 cut(s) 76, 129, 250
PflFI GACNNNGTC 1 cut(s) 266
PflMI CCANNNNNTGG 1 cut(s) 305
Psp124BI GAGCTC 1 cut(s) 42
PspEI GGTNACC 1 cut(s) 260
PsyI GACNNNGTC 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 302
RsaI GTAC 1 cut(s) 355
RsaNI GTAC 1 cut(s) 354
SacI GAGCTC 1 cut(s) 42
Sau3AI GATC 1 cut(s) 403
SduI GDGCHC 1 cut(s) 42
SetI ASST 5 cut(s) 42, 64, 267, 304, 346
SfaNI GCATC 1 cut(s) 199
SstI GAGCTC 1 cut(s) 42
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 64
TaqI TCGA 1 cut(s) 74
TfiI GAWTC 3 cut(s) 76, 129, 250
TscAI CASTG 2 cut(s) 35, 145
TseFI GTSAC 2 cut(s) 260, 329
Tsp45I GTSAC 2 cut(s) 260, 329
TspDTI ATGAA 3 cut(s) 17, 60, 171
TspRI CASTG 2 cut(s) 35, 145
Tth111I GACNNNGTC 1 cut(s) 266
Van91I CCANNNNNTGG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.