Rmu_ssc0000410.1_g000049

Ataxin 2 SM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000410.1
OG0001651
Physical Location & Seq
Forward (+)
313812 .. 319799
5988 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000410.1_g000049.1.cds

Sequence Viewer

Length: 1491 bp
atgtgcatcattggtctcccagtcgatgttcacgtgaaggacggctctgtctactccggaatcttccacactgcttctgtggaaaatgaatacggcattgttttgaagaaagcacggatgactaaaaagggaaaatctgatgcgaatgtagcaaatggggagttgatagatactcttgtgattctttctggtgaccttgtccaagttgttacaaagggagttttacttccagctgatggtgttgctggaaatatgtctggtgacagaactgaagctgttacgggtactgtttcttctgatgagtgttcaaagaatggtgcgaagaagtcaagtgagtctgccataaataagaagaagggtggaagggtgctaatgcaaaatgggaatgactttcatggtgttacacccacaagggctggcaaggaacatggagggaggaatatgccactgaatcatattgagaatgcctcagaacttgaaaagagaagtgatgaggtaaacttatcagagattagagaatcctctggtgccagcatgaacaggagacaggtggatgatgggtctccagggaagcaggatgatttcaaccagaaattagaggtttattggaaagaaagtgctgacaaagttcaggatacaaagatgacatccaagctctcccctttcggtgtatcttgtgatccttctactgtaatagttcaacaagacattcagtgctgtcaaaggacaacttcagaatacacttcttccagttcaaatgttgtttcttcaggttcctcaactttgttgaatccagctgctaatgtctcaagtcgtaattcagaaacaacaccaactgaaatgatccctcatggttcagagttaaataaaagtggcaaggaatttaagctcaacccgggagcaaaagttttctcgccgtcttttacaaagcccatagcagccacctctcctgcagtgccaacaatggcaagcatgggttttataccaaccaactgccccgtggtacctggtcctgccgtccagccagaagttggatcgaatcctttcgcatcccgtacatctgtacctgttaaggttctcccatacaataatttcacaactgggaatggtagcagtgcttctcaattttcacaacctattgttggacacatgagcagtagggcgcagacagttaggtatgctggtcagtatcctgttcaggctggaccgacctatgtgcatccaaatactcaagctgttatggtaggacgatttggacagcttgtctatgtgcatccagtttctcaagatttggttcagggtacaccagccatctcaccactctctgcacgtcctatgttgactccacatcaggtccagtttccgaagcaccaaggaactgcaggccaagcattgcagctgtgtgtgcctccgcagttcatggctactggacagcagccttttcccattgccaagtcgcatccgatttttgcaacctcccttccgttctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

496

Amino Acids

52.7

Weight (kDa)

8.68

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 47
Acc65I GGTACC 1 cut(s) 1003
AccB1I GGYRCC 2 cut(s) 527, 1003
AccB7I CCANNNNNTGG 2 cut(s) 236, 1031
AccI GTMKAC 1 cut(s) 51
AccIII TCCGGA 1 cut(s) 56
AciI CCGC 1 cut(s) 1412
AclWI GGATC 3 cut(s) 674, 838, 1042
AcsI RAATTY 1 cut(s) 881
AcuI CTGAAG 3 cut(s) 291, 717, 753
AcvI CACGTG 1 cut(s) 34
AfaI GTAC 5 cut(s) 286, 1005, 1057, 1065, 1303
AfiI CCNNNNNNNGG 3 cut(s) 236, 1031, 1142
AgsI TTSAA 7 cut(s) 106, 309, 479, 586, 701, 756, 790
AhdI GACNNNNNGTC 1 cut(s) 1262
AjiI CACGTC 1 cut(s) 1331
AjnI CCWGG 2 cut(s) 565, 1006
AluBI AGCT 8 cut(s) 233, 275, 655, 797, 889, 1235, 1261, 1399
AluI AGCT 8 cut(s) 233, 275, 655, 797, 889, 1235, 1261, 1399
Alw26I GTCTC 4 cut(s) 20, 538, 567, 811
AlwI GGATC 3 cut(s) 674, 838, 1042
Ama87I CYCGRG 1 cut(s) 895
Aor13HI TCCGGA 1 cut(s) 56
AoxI GGCC 1 cut(s) 1384
ApeKI GCWGC 4 cut(s) 797, 938, 1396, 1435
ApoI RAATTY 1 cut(s) 881
Asp700I GAANNNNTTC 1 cut(s) 1043
Asp718I GGTACC 1 cut(s) 1003
AspLEI GCGC 1 cut(s) 1165
AspS9I GGNCC 3 cut(s) 1010, 1205, 1354
AsuC2I CCSGG 2 cut(s) 896, 897
AsuHPI GGTGA 3 cut(s) 203, 272, 1308
AvaI CYCGRG 1 cut(s) 895
AvaII GGWCC 3 cut(s) 1010, 1205, 1354
BaeI ACNNNNGTAYC 4 cut(s) 162, 195, 1047, 1080
BanI GGYRCC 2 cut(s) 527, 1003
BarI GAAGNNNNNNTAC 4 cut(s) 277, 309, 1102, 1134
BbrPI CACGTG 1 cut(s) 34
BbvI GCAGC 4 cut(s) 784, 950, 1408, 1447
BccI CCATC 3 cut(s) 230, 551, 1319
BceAI ACGGC 4 cut(s) 58, 109, 901, 1001
BcgI CGANNNNNNTGC 2 cut(s) 1198, 1232
BciT130I CCWGG 2 cut(s) 567, 1008
BciVI GTATCC 2 cut(s) 628, 1200
BcnI CCSGG 2 cut(s) 896, 897
BcoDI GTCTC 4 cut(s) 20, 538, 567, 811
BfmI CTRYAG 2 cut(s) 951, 1380
BfuI GTATCC 2 cut(s) 628, 1200
BisI GCNGC 4 cut(s) 798, 939, 1397, 1436
BlsI GCNGC 4 cut(s) 799, 940, 1398, 1437
Bme1390I CCNGG 4 cut(s) 567, 896, 897, 1008
Bme18I GGWCC 3 cut(s) 1010, 1205, 1354
BmeRI GACNNNNNGTC 1 cut(s) 1262
BmeT110I CYCGRG 1 cut(s) 895
BmgBI CACGTC 1 cut(s) 1331
BmgT120I GGNCC 3 cut(s) 1010, 1205, 1354
BmiI GGNNCC 3 cut(s) 529, 775, 1005
BmrFI CCNGG 4 cut(s) 567, 896, 897, 1008
BmrI ACTGGG 2 cut(s) 14, 1110
BmsI GCATC 6 cut(s) 15, 130, 1058, 1228, 1282, 1468
BmuI ACTGGG 2 cut(s) 14, 1110
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpmI CTGGAG 1 cut(s) 549
BpuEI CTTGAG 3 cut(s) 793, 1215, 1269
BpuMI CCSGG 2 cut(s) 896, 897
BsaAI YACGTR 1 cut(s) 34
BsaI GGTCTC 2 cut(s) 20, 567
BsaJI CCNNGG 4 cut(s) 566, 895, 999, 1372
BsaWI WCCGGW 1 cut(s) 56
BsaXI ACNNNNNCTCC 2 cut(s) 891, 921
Bsc4I CCNNNNNNNGG 3 cut(s) 236, 1031, 1142
Bse1I ACTGG 6 cut(s) 20, 750, 1105, 1277, 1357, 1432
Bse3DI GCAATG 2 cut(s) 1391, 1446
BseAI TCCGGA 1 cut(s) 56
BseBI CCWGG 2 cut(s) 567, 1008
BseDI CCNNGG 4 cut(s) 566, 895, 999, 1372
BseGI GGATG 8 cut(s) 123, 559, 583, 647, 1049, 1219, 1273, 1459
BseLI CCNNNNNNNGG 3 cut(s) 236, 1031, 1142
BseMI GCAATG 2 cut(s) 1391, 1446
BseMII CTCAG 1 cut(s) 483
BseNI ACTGG 6 cut(s) 20, 750, 1105, 1277, 1357, 1432
BseXI GCAGC 4 cut(s) 784, 950, 1408, 1447
BsgI GTGCAG 1 cut(s) 1311
BshFI GGCC 1 cut(s) 1386
BshNI GGYRCC 2 cut(s) 527, 1003
BsiHKCI CYCGRG 1 cut(s) 895
BsiSI CCGG 2 cut(s) 57, 896
BslI CCNNNNNNNGG 3 cut(s) 236, 1031, 1142
BsmAI GTCTC 4 cut(s) 20, 538, 567, 811
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 1 cut(s) 1386
Bso31I GGTCTC 2 cut(s) 20, 567
BsoBI CYCGRG 1 cut(s) 895
Bsp13I TCCGGA 1 cut(s) 56
Bsp143I GATC 3 cut(s) 679, 843, 1034
BspACI CCGC 1 cut(s) 1412
BspANI GGCC 1 cut(s) 1386
BspCNI CTCAG 1 cut(s) 482
BspEI TCCGGA 1 cut(s) 56
BspLI GGNNCC 3 cut(s) 529, 775, 1005
BspMAI CTGCAG 2 cut(s) 955, 1384
BspPI GGATC 3 cut(s) 674, 838, 1042
BspT107I GGYRCC 2 cut(s) 527, 1003
BspTNI GGTCTC 2 cut(s) 20, 567
BsrDI GCAATG 2 cut(s) 1391, 1446
BsrI ACTGG 6 cut(s) 20, 750, 1105, 1277, 1357, 1432
BssECI CCNNGG 4 cut(s) 566, 895, 999, 1372
BssMI GATC 3 cut(s) 679, 843, 1034
BssT1I CCWWGG 1 cut(s) 1372
Bst2UI CCWGG 2 cut(s) 567, 1008
Bst4CI ACNGT 3 cut(s) 289, 691, 1171
BstBAI YACGTR 1 cut(s) 34
BstC8I GCNNGC 4 cut(s) 418, 532, 970, 1384
BstDEI CTNAG 1 cut(s) 469
BstDSI CCRYGG 1 cut(s) 999
BstEII GGTNACC 1 cut(s) 191
BstF5I GGATG 8 cut(s) 123, 559, 583, 647, 1049, 1219, 1273, 1459
BstHHI GCGC 1 cut(s) 1165
BstKTI GATC 3 cut(s) 682, 846, 1037
BstMAI GTCTC 4 cut(s) 20, 538, 567, 811
BstMBI GATC 3 cut(s) 679, 843, 1034
BstMWI GCNNNNNNNGC 3 cut(s) 149, 1388, 1405
BstNI CCWGG 2 cut(s) 567, 1008
BstPI GGTNACC 1 cut(s) 191
BstSCI CCNGG 4 cut(s) 565, 894, 895, 1006
BstSFI CTRYAG 2 cut(s) 951, 1380
BstV1I GCAGC 4 cut(s) 784, 950, 1408, 1447
BsuI GTATCC 2 cut(s) 628, 1200
BsuRI GGCC 1 cut(s) 1386
BtgI CCRYGG 1 cut(s) 999
BtrI CACGTC 1 cut(s) 1331
BtsCI GGATG 8 cut(s) 123, 559, 583, 647, 1049, 1219, 1273, 1459
BtsI GCAGTG 3 cut(s) 69, 960, 1120
BtsIMutI CAGTG 5 cut(s) 69, 446, 719, 960, 1120
Cac8I GCNNGC 4 cut(s) 418, 532, 970, 1384
CfoI GCGC 1 cut(s) 1165
Cfr13I GGNCC 3 cut(s) 1010, 1205, 1354
Cfr9I CCCGGG 1 cut(s) 895
CsiI ACCWGGT 1 cut(s) 1006
Csp6I GTAC 5 cut(s) 285, 1004, 1056, 1064, 1302
CviAII CATG 7 cut(s) 395, 428, 535, 851, 973, 1150, 1420
CviQI GTAC 5 cut(s) 285, 1004, 1056, 1064, 1302
DdeI CTNAG 1 cut(s) 469
DpnI GATC 3 cut(s) 681, 845, 1036
DpnII GATC 3 cut(s) 679, 843, 1034
DrdI GACNNNNNNGTC 1 cut(s) 47
DriI GACNNNNNGTC 1 cut(s) 1262
DseDI GACNNNNNNGTC 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 1262
Eco130I CCWWGG 1 cut(s) 1372
Eco31I GGTCTC 2 cut(s) 20, 567
Eco47I GGWCC 3 cut(s) 1010, 1205, 1354
Eco57I CTGAAG 3 cut(s) 291, 717, 753
Eco72I CACGTG 1 cut(s) 34
Eco88I CYCGRG 1 cut(s) 895
Eco91I GGTNACC 1 cut(s) 191
EcoO65I GGTNACC 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 565, 1006
EcoT14I CCWWGG 1 cut(s) 1372
ErhI CCWWGG 1 cut(s) 1372
FaeI CATG 7 cut(s) 398, 431, 538, 854, 976, 1153, 1423
FalI AAGNNNNNCTT 2 cut(s) 715, 747
FatI CATG 7 cut(s) 394, 427, 534, 850, 972, 1149, 1419
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 4 cut(s) 798, 939, 1397, 1436
FokI GGATG 8 cut(s) 130, 566, 590, 634, 1036, 1206, 1260, 1446
Fsp4HI GCNGC 4 cut(s) 798, 939, 1397, 1436
GlaI GCGC 1 cut(s) 1164
GluI GCNGC 4 cut(s) 798, 939, 1397, 1436
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 1 cut(s) 1386
HapII CCGG 2 cut(s) 57, 896
HhaI GCGC 1 cut(s) 1165
Hin1II CATG 7 cut(s) 398, 431, 538, 854, 976, 1153, 1423
Hin6I GCGC 1 cut(s) 1163
HinP1I GCGC 1 cut(s) 1163
HincII GTYRAC 1 cut(s) 1341
HindII GTYRAC 1 cut(s) 1341
HinfI GANTC 8 cut(s) 60, 181, 335, 451, 518, 790, 1039, 1342
HpaII CCGG 2 cut(s) 57, 896
HphI GGTGA 3 cut(s) 203, 272, 1308
Hpy166II GTNNAC 5 cut(s) 31, 52, 499, 1304, 1341
Hpy188I TCNGA 9 cut(s) 139, 298, 472, 508, 736, 823, 859, 1365, 1464
Hpy188III TCNNGA 3 cut(s) 57, 632, 1286
Hpy8I GTNNAC 5 cut(s) 31, 52, 499, 1304, 1341
HpyAV CCTTC 5 cut(s) 31, 349, 357, 693, 1490
HpyCH4III ACNGT 3 cut(s) 289, 691, 1171
HpyCH4IV ACGT 2 cut(s) 33, 1330
HpyCH4V TGCA 9 cut(s) 6, 376, 953, 1219, 1273, 1328, 1382, 1396, 1472
HpyF10VI GCNNNNNNNGC 3 cut(s) 149, 1388, 1405
HpyF3I CTNAG 1 cut(s) 469
HpySE526I ACGT 2 cut(s) 33, 1330
Hsp92II CATG 7 cut(s) 398, 431, 538, 854, 976, 1153, 1423
HspAI GCGC 1 cut(s) 1163
Kpn2I TCCGGA 1 cut(s) 56
KpnI GGTACC 1 cut(s) 1007
Kzo9I GATC 3 cut(s) 679, 843, 1034
LmnI GCTCC 1 cut(s) 899
Lsp1109I GCAGC 4 cut(s) 784, 950, 1408, 1447
LweI GCATC 6 cut(s) 15, 130, 1058, 1228, 1282, 1468
MabI ACCWGGT 1 cut(s) 1006
MaeII ACGT 2 cut(s) 33, 1330
MaeIII GTNAC 5 cut(s) 191, 208, 260, 277, 400
MalI GATC 3 cut(s) 681, 845, 1036
MboI GATC 3 cut(s) 679, 843, 1034
MboII GAAGA 7 cut(s) 55, 118, 285, 334, 364, 738, 759
MluCI AATT 5 cut(s) 593, 817, 881, 1090, 1124
MlyI GAGTC 2 cut(s) 344, 1336
MmeI TCCRAC 2 cut(s) 1012, 1123
MroI TCCGGA 1 cut(s) 56
MroXI GAANNNNTTC 1 cut(s) 1043
MseI TTAA 3 cut(s) 863, 885, 1071
MspA1I CMGCKG 3 cut(s) 233, 797, 1399
MspI CCGG 2 cut(s) 57, 896
MspR9I CCNGG 4 cut(s) 567, 896, 897, 1008
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 2 cut(s) 567, 1008
MwoI GCNNNNNNNGC 3 cut(s) 149, 1388, 1405
NciI CCSGG 2 cut(s) 896, 897
NdeII GATC 3 cut(s) 679, 843, 1034
NlaIII CATG 7 cut(s) 398, 431, 538, 854, 976, 1153, 1423
NlaIV GGNNCC 3 cut(s) 529, 775, 1005
NmuCI GTSAC 2 cut(s) 191, 260
PcsI WCGNNNNNNNCGW 1 cut(s) 30
PctI GAATGC 1 cut(s) 469
PdmI GAANNNNTTC 1 cut(s) 1043
PfeI GAWTC 6 cut(s) 60, 181, 451, 518, 790, 1039
PflFI GACNNNGTC 1 cut(s) 197
PflMI CCANNNNNTGG 2 cut(s) 236, 1031
PkrI GCNGC 4 cut(s) 799, 940, 1398, 1437
PleI GAGTC 2 cut(s) 343, 1336
PmaCI CACGTG 1 cut(s) 34
PmlI CACGTG 1 cut(s) 34
PpsI GAGTC 2 cut(s) 343, 1336
Ppu21I YACGTR 1 cut(s) 34
Psp6I CCWGG 2 cut(s) 565, 1006
PspCI CACGTG 1 cut(s) 34
PspEI GGTNACC 1 cut(s) 191
PspGI CCWGG 2 cut(s) 565, 1006
PspN4I GGNNCC 3 cut(s) 529, 775, 1005
PspPI GGNCC 3 cut(s) 1010, 1205, 1354
PstI CTGCAG 2 cut(s) 955, 1384
PsyI GACNNNGTC 1 cut(s) 197
PvuII CAGCTG 3 cut(s) 233, 797, 1399
RsaI GTAC 5 cut(s) 286, 1005, 1057, 1065, 1303
RsaNI GTAC 5 cut(s) 285, 1004, 1056, 1064, 1302
SaqAI TTAA 3 cut(s) 863, 885, 1071
SatI GCNGC 4 cut(s) 798, 939, 1397, 1436
Sau3AI GATC 3 cut(s) 679, 843, 1034
Sau96I GGNCC 3 cut(s) 1010, 1205, 1354
SchI GAGTC 2 cut(s) 344, 1336
ScrFI CCNGG 4 cut(s) 567, 896, 897, 1008
SexAI ACCWGGT 1 cut(s) 1006
SfaNI GCATC 6 cut(s) 15, 130, 1058, 1228, 1282, 1468
SfcI CTRYAG 2 cut(s) 951, 1380
SinI GGWCC 3 cut(s) 1010, 1205, 1354
SmaI CCCGGG 1 cut(s) 897
SmlI CTYRAG 3 cut(s) 808, 1230, 1284
SmoI CTYRAG 3 cut(s) 808, 1230, 1284
Sse9I AATT 5 cut(s) 593, 817, 881, 1090, 1124
SsiI CCGC 1 cut(s) 1412
StyD4I CCNGG 4 cut(s) 565, 894, 895, 1006
StyI CCWWGG 1 cut(s) 1372
TaaI ACNGT 3 cut(s) 289, 691, 1171
TaiI ACGT 2 cut(s) 36, 1333
TaqI TCGA 2 cut(s) 24, 1037
TaqII GACCGA 1 cut(s) 1222
TasI AATT 5 cut(s) 593, 817, 881, 1090, 1124
TfiI GAWTC 6 cut(s) 60, 181, 451, 518, 790, 1039
Tru1I TTAA 3 cut(s) 863, 885, 1071
Tru9I TTAA 3 cut(s) 863, 885, 1071
TscAI CASTG 5 cut(s) 76, 453, 719, 960, 1120
TseFI GTSAC 2 cut(s) 191, 260
TseI GCWGC 4 cut(s) 797, 938, 1396, 1435
Tsp45I GTSAC 2 cut(s) 191, 260
TspDTI ATGAA 4 cut(s) 102, 383, 551, 1408
TspGWI ACGGA 2 cut(s) 130, 1473
TspMI CCCGGG 1 cut(s) 895
TspRI CASTG 5 cut(s) 76, 453, 719, 960, 1120
Tth111I GACNNNGTC 1 cut(s) 197
Van91I CCANNNNNTGG 2 cut(s) 236, 1031
VpaK11BI GGWCC 3 cut(s) 1010, 1205, 1354
XapI RAATTY 1 cut(s) 881
XcmI CCANNNNNNNNNTGG 2 cut(s) 997, 1028
XmaI CCCGGG 1 cut(s) 895
XmiI GTMKAC 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 1043
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.