RchiOBHm_Chr5g0039281

Ataxin 2 SM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001651
Physical Location & Seq
Forward (+)
33960634 .. 33967075
6442 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31786

Sequence Viewer

Length: 1575 bp
ATGGGGTGCAGAAACAGAGCGCTCACAGAAGACGATGCCGTTTCTTCTTCTTCTTCATTAAGCGAGGCCTTGCTGTTTGCGACCATGTGCATCATTGGTCTCCCAGTCGATGTTCACGTGAAGGACGGCTCTGTCTACTCCGGAATCTTCCACACTGCTTCTGTGGAAAATGAATACGGCATTGTTTTGAAGAAAGCAAGGATGACTAAAAAGGGAAAATCTGATGCGAATGTATCAAATGGGGAGTTGATAGATACTCTTGTGATTCTTTCTGGTGACCTTGTCCAAGTTGTTACAAAGGGAGTTTTACTTCCAGCTGATGGTGTTACTGGAAATATGTCTGGTGACAGAACTGAAGCTGTTACGGGTACTGTTTCTTCTGATGAGTGTTCAAAGAATGGTGCGAAGAAGTCAAGTGAGTCTGCCATAAATAAGAAGAAGGGTGGAAGGGTGCTAATGCAAAATGGGAATGACTTTCATGGTGTTACACCCACAAGGGCTGGCAAGGAACATGGAGGGAGGAATATGCCACTGAATCATATTGAGAATGCCTCAGAACTTGAAAAGAGAAGTGATGAGGTAAACTTATCAGAGATTAGAGAATCCTCTGGTGCCAGCATGAACAGGAGACAGGTGGATGATGGGTCTCAAGGGAAGCAGGATGATTTCAACCAGAAATTAGAGGTTTATAGGAAAGAAAGTGCTGACAAAGTTCAGGATACAAAGATGACATCCAAGCTCTCCCCTTTCGGAGTATCTTGTGATCCTTCTACTGTAATAGTTCAACAAGACATTCAGTGCTGTGAAAGGACAACTTCAGAATACACTTCTTCCAGTTCAAATGTTGTTTCTTCAGGTTCCTCAACTTTGTTGAATCCAGCTGCTAATGTCTCAAGTCGTAATTCAGAAACAACACCAACTGAAATGATCCCTCATGGTTCAGAGTTAAATAAAAGTGGCAAGGAATTTAAGCTCAACCCAGGAGCAAAAGTATTCTCGCCATCTTTTACAAAGCCCATAGCAGCCACCTCTCCTGCAGTGCCAACAGTGGCAAGCATGGGTTTTATACCAACCAACTGCCCCGTGGTACCTGGTCCTGCCGTCCAGCCAGAAGTTGGATCGAATCCTTTCGCATCCCGTACATCTGTATCTGTTAAGGTTCTCCCATACAATAATTTCACAACTGGGAATGGTAGCAGTGCTTCTCAATTTTCACAACCTATTGTTGGACACATGAGCAGTAGGGCGCAGACAGTTAGGTATGCTGGTCAGTATCCTGTTCAGGCTGGACCGACCTATGTACATCCAAATACTCAAGCTGTTATGGTAGGACGATTTGGACAGCTTGTCTATGTGCATCCAGTTTCTCAAGATTTGGTTCAGGGTACACCAGCCATCTCACCACTCTCTGCACGTCCTATGTTGACTCCACATCAGGTCCAGTTTCCGAAGCACCAAGGAACTGCAGGCCAAGCATTGCAGCTGTGTGTGCCTCCGCAGTTCATGGCTACTGGACAGCAGCCTTTTCCCATTGCCAAGTCGCATCCGATTTTTGCAACCTCCCTTCCATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

524

Amino Acids

55.62

Weight (kDa)

8.31

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SM-ATX PF14438 22 - 99 1.2e-25 Ataxin 2 SM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
Acc65I GGTACC 1 cut(s) 1087
AccB1I GGYRCC 2 cut(s) 611, 1087
AccB7I CCANNNNNTGG 2 cut(s) 320, 1115
AccI GTMKAC 1 cut(s) 135
AccIII TCCGGA 1 cut(s) 140
AciI CCGC 1 cut(s) 1496
AclWI GGATC 3 cut(s) 758, 922, 1126
AcsI RAATTY 1 cut(s) 965
AcuI CTGAAG 3 cut(s) 375, 801, 837
AcvI CACGTG 1 cut(s) 118
AfaI GTAC 5 cut(s) 370, 1089, 1141, 1302, 1387
AfeI AGCGCT 1 cut(s) 21
AfiI CCNNNNNNNGG 3 cut(s) 320, 1115, 1226
AgsI TTSAA 7 cut(s) 190, 393, 563, 670, 785, 840, 874
AhdI GACNNNNNGTC 1 cut(s) 1346
AjiI CACGTC 1 cut(s) 1415
AjnI CCWGG 2 cut(s) 979, 1090
AluBI AGCT 8 cut(s) 317, 359, 739, 881, 973, 1319, 1345, 1483
AluI AGCT 8 cut(s) 317, 359, 739, 881, 973, 1319, 1345, 1483
Alw26I GTCTC 4 cut(s) 104, 622, 651, 895
AlwI GGATC 3 cut(s) 758, 922, 1126
Aor13HI TCCGGA 1 cut(s) 140
Aor51HI AGCGCT 1 cut(s) 21
AoxI GGCC 2 cut(s) 66, 1468
ApeKI GCWGC 4 cut(s) 881, 1022, 1480, 1519
ApoI RAATTY 1 cut(s) 965
Asp700I GAANNNNTTC 1 cut(s) 1127
Asp718I GGTACC 1 cut(s) 1087
AspLEI GCGC 2 cut(s) 22, 1249
AspS9I GGNCC 3 cut(s) 1094, 1289, 1438
AsuHPI GGTGA 3 cut(s) 287, 356, 1392
AvaII GGWCC 3 cut(s) 1094, 1289, 1438
BaeI ACNNNNGTAYC 4 cut(s) 246, 279, 1131, 1164
BanI GGYRCC 2 cut(s) 611, 1087
BarI GAAGNNNNNNTAC 4 cut(s) 361, 393, 1186, 1218
BbrPI CACGTG 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 36
BbvI GCAGC 4 cut(s) 868, 1034, 1492, 1531
BccI CCATC 4 cut(s) 314, 635, 1009, 1403
BceAI ACGGC 4 cut(s) 23, 142, 193, 1085
BciT130I CCWGG 2 cut(s) 981, 1092
BciVI GTATCC 2 cut(s) 712, 1284
BcoDI GTCTC 4 cut(s) 104, 622, 651, 895
BfmI CTRYAG 2 cut(s) 1035, 1464
BfoI RGCGCY 1 cut(s) 23
BfuI GTATCC 2 cut(s) 712, 1284
BisI GCNGC 4 cut(s) 882, 1023, 1481, 1520
BlsI GCNGC 4 cut(s) 883, 1024, 1482, 1521
Bme1390I CCNGG 2 cut(s) 981, 1092
Bme18I GGWCC 3 cut(s) 1094, 1289, 1438
BmeRI GACNNNNNGTC 1 cut(s) 1346
BmgBI CACGTC 1 cut(s) 1415
BmgT120I GGNCC 3 cut(s) 1094, 1289, 1438
BmiI GGNNCC 3 cut(s) 613, 859, 1089
BmrFI CCNGG 2 cut(s) 981, 1092
BmrI ACTGGG 2 cut(s) 98, 1194
BmsI GCATC 6 cut(s) 25, 99, 214, 1142, 1366, 1552
BmuI ACTGGG 2 cut(s) 98, 1194
BpiI GAAGAC 1 cut(s) 36
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BpuEI CTTGAG 4 cut(s) 633, 877, 1299, 1353
BsaAI YACGTR 1 cut(s) 118
BsaI GGTCTC 2 cut(s) 104, 651
BsaJI CCNNGG 3 cut(s) 979, 1083, 1456
BsaWI WCCGGW 1 cut(s) 140
BsaXI ACNNNNNCTCC 2 cut(s) 975, 1005
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 1115, 1226
Bse1I ACTGG 7 cut(s) 104, 334, 834, 1189, 1361, 1441, 1516
Bse3DI GCAATG 2 cut(s) 1475, 1530
BseAI TCCGGA 1 cut(s) 140
BseBI CCWGG 2 cut(s) 981, 1092
BseDI CCNNGG 3 cut(s) 979, 1083, 1456
BseGI GGATG 8 cut(s) 207, 643, 667, 731, 1133, 1303, 1357, 1543
BseLI CCNNNNNNNGG 3 cut(s) 320, 1115, 1226
BseMI GCAATG 2 cut(s) 1475, 1530
BseMII CTCAG 1 cut(s) 567
BseNI ACTGG 7 cut(s) 104, 334, 834, 1189, 1361, 1441, 1516
BseXI GCAGC 4 cut(s) 868, 1034, 1492, 1531
BsgI GTGCAG 2 cut(s) 28, 1395
BshFI GGCC 2 cut(s) 68, 1470
BshNI GGYRCC 2 cut(s) 611, 1087
BsiSI CCGG 1 cut(s) 141
BslI CCNNNNNNNGG 3 cut(s) 320, 1115, 1226
BsmAI GTCTC 4 cut(s) 104, 622, 651, 895
BsmI GAATGC 1 cut(s) 553
BsnI GGCC 2 cut(s) 68, 1470
Bso31I GGTCTC 2 cut(s) 104, 651
Bsp13I TCCGGA 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 1300
Bsp143I GATC 3 cut(s) 763, 927, 1118
BspACI CCGC 1 cut(s) 1496
BspANI GGCC 2 cut(s) 68, 1470
BspCNI CTCAG 1 cut(s) 566
BspEI TCCGGA 1 cut(s) 140
BspLI GGNNCC 3 cut(s) 613, 859, 1089
BspMAI CTGCAG 2 cut(s) 1039, 1468
BspPI GGATC 3 cut(s) 758, 922, 1126
BspT107I GGYRCC 2 cut(s) 611, 1087
BspTNI GGTCTC 2 cut(s) 104, 651
BsrDI GCAATG 2 cut(s) 1475, 1530
BsrGI TGTACA 1 cut(s) 1300
BsrI ACTGG 7 cut(s) 104, 334, 834, 1189, 1361, 1441, 1516
BssECI CCNNGG 3 cut(s) 979, 1083, 1456
BssMI GATC 3 cut(s) 763, 927, 1118
BssT1I CCWWGG 1 cut(s) 1456
Bst2UI CCWGG 2 cut(s) 981, 1092
Bst4CI ACNGT 4 cut(s) 373, 775, 1048, 1255
BstAUI TGTACA 1 cut(s) 1300
BstBAI YACGTR 1 cut(s) 118
BstC8I GCNNGC 4 cut(s) 502, 616, 1054, 1468
BstDEI CTNAG 1 cut(s) 553
BstDSI CCRYGG 1 cut(s) 1083
BstEII GGTNACC 1 cut(s) 275
BstF5I GGATG 8 cut(s) 207, 643, 667, 731, 1133, 1303, 1357, 1543
BstH2I RGCGCY 1 cut(s) 23
BstHHI GCGC 2 cut(s) 22, 1249
BstKTI GATC 3 cut(s) 766, 930, 1121
BstMAI GTCTC 4 cut(s) 104, 622, 651, 895
BstMBI GATC 3 cut(s) 763, 927, 1118
BstMWI GCNNNNNNNGC 2 cut(s) 1472, 1489
BstNI CCWGG 2 cut(s) 981, 1092
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 979, 1090
BstSFI CTRYAG 2 cut(s) 1035, 1464
BstV1I GCAGC 4 cut(s) 868, 1034, 1492, 1531
BstV2I GAAGAC 1 cut(s) 36
BsuI GTATCC 2 cut(s) 712, 1284
BsuRI GGCC 2 cut(s) 68, 1470
BtgI CCRYGG 1 cut(s) 1083
BtrI CACGTC 1 cut(s) 1415
BtsCI GGATG 8 cut(s) 207, 643, 667, 731, 1133, 1303, 1357, 1543
BtsI GCAGTG 3 cut(s) 153, 1044, 1204
BtsIMutI CAGTG 6 cut(s) 153, 530, 803, 1044, 1053, 1204
Cac8I GCNNGC 4 cut(s) 502, 616, 1054, 1468
CfoI GCGC 2 cut(s) 22, 1249
Cfr13I GGNCC 3 cut(s) 1094, 1289, 1438
CsiI ACCWGGT 1 cut(s) 1090
Csp6I GTAC 5 cut(s) 369, 1088, 1140, 1301, 1386
CviAII CATG 8 cut(s) 85, 479, 512, 619, 935, 1057, 1234, 1504
CviQI GTAC 5 cut(s) 369, 1088, 1140, 1301, 1386
DdeI CTNAG 1 cut(s) 553
DpnI GATC 3 cut(s) 765, 929, 1120
DpnII GATC 3 cut(s) 763, 927, 1118
DrdI GACNNNNNNGTC 1 cut(s) 131
DriI GACNNNNNGTC 1 cut(s) 1346
DseDI GACNNNNNNGTC 1 cut(s) 131
Eam1105I GACNNNNNGTC 1 cut(s) 1346
Eco130I CCWWGG 1 cut(s) 1456
Eco147I AGGCCT 1 cut(s) 68
Eco31I GGTCTC 2 cut(s) 104, 651
Eco47I GGWCC 3 cut(s) 1094, 1289, 1438
Eco47III AGCGCT 1 cut(s) 21
Eco57I CTGAAG 3 cut(s) 375, 801, 837
Eco72I CACGTG 1 cut(s) 118
Eco91I GGTNACC 1 cut(s) 275
EcoO65I GGTNACC 1 cut(s) 275
EcoRII CCWGG 2 cut(s) 979, 1090
EcoT14I CCWWGG 1 cut(s) 1456
ErhI CCWWGG 1 cut(s) 1456
FaeI CATG 8 cut(s) 88, 482, 515, 622, 938, 1060, 1237, 1507
FalI AAGNNNNNCTT 2 cut(s) 799, 831
FatI CATG 8 cut(s) 84, 478, 511, 618, 934, 1056, 1233, 1503
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 4 cut(s) 882, 1023, 1481, 1520
FokI GGATG 8 cut(s) 214, 650, 674, 718, 1120, 1290, 1344, 1530
Fsp4HI GCNGC 4 cut(s) 882, 1023, 1481, 1520
GlaI GCGC 2 cut(s) 21, 1248
GluI GCNGC 4 cut(s) 882, 1023, 1481, 1520
HaeII RGCGCY 1 cut(s) 23
HaeIII GGCC 2 cut(s) 68, 1470
HapII CCGG 1 cut(s) 141
HhaI GCGC 2 cut(s) 22, 1249
Hin1II CATG 8 cut(s) 88, 482, 515, 622, 938, 1060, 1237, 1507
Hin6I GCGC 2 cut(s) 20, 1247
HinP1I GCGC 2 cut(s) 20, 1247
HincII GTYRAC 1 cut(s) 1425
HindII GTYRAC 1 cut(s) 1425
HinfI GANTC 8 cut(s) 144, 265, 419, 535, 602, 874, 1123, 1426
HpaII CCGG 1 cut(s) 141
HphI GGTGA 3 cut(s) 287, 356, 1392
Hpy166II GTNNAC 5 cut(s) 115, 136, 583, 1388, 1425
Hpy188III TCNNGA 3 cut(s) 141, 716, 1370
Hpy8I GTNNAC 5 cut(s) 115, 136, 583, 1388, 1425
HpyAV CCTTC 5 cut(s) 115, 433, 441, 777, 1574
HpyCH4III ACNGT 4 cut(s) 373, 775, 1048, 1255
HpyCH4IV ACGT 2 cut(s) 117, 1414
HpyCH4V TGCA 9 cut(s) 9, 90, 460, 1037, 1357, 1412, 1466, 1480, 1556
HpyF10VI GCNNNNNNNGC 2 cut(s) 1472, 1489
HpyF3I CTNAG 1 cut(s) 553
HpySE526I ACGT 2 cut(s) 117, 1414
Hsp92II CATG 8 cut(s) 88, 482, 515, 622, 938, 1060, 1237, 1507
HspAI GCGC 2 cut(s) 20, 1247
Kpn2I TCCGGA 1 cut(s) 140
KpnI GGTACC 1 cut(s) 1091
Kzo9I GATC 3 cut(s) 763, 927, 1118
LmnI GCTCC 1 cut(s) 983
Lsp1109I GCAGC 4 cut(s) 868, 1034, 1492, 1531
LweI GCATC 6 cut(s) 25, 99, 214, 1142, 1366, 1552
MabI ACCWGGT 1 cut(s) 1090
MaeII ACGT 2 cut(s) 117, 1414
MaeIII GTNAC 6 cut(s) 275, 292, 325, 344, 361, 484
MalI GATC 3 cut(s) 765, 929, 1120
MboI GATC 3 cut(s) 763, 927, 1118
MluCI AATT 5 cut(s) 677, 901, 965, 1174, 1208
MlyI GAGTC 2 cut(s) 428, 1420
MmeI TCCRAC 2 cut(s) 1096, 1207
MroI TCCGGA 1 cut(s) 140
MroXI GAANNNNTTC 1 cut(s) 1127
MseI TTAA 4 cut(s) 59, 947, 969, 1155
MspA1I CMGCKG 3 cut(s) 317, 881, 1483
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 981, 1092
Mva1269I GAATGC 1 cut(s) 553
MvaI CCWGG 2 cut(s) 981, 1092
MwoI GCNNNNNNNGC 2 cut(s) 1472, 1489
NdeII GATC 3 cut(s) 763, 927, 1118
NlaIII CATG 8 cut(s) 88, 482, 515, 622, 938, 1060, 1237, 1507
NlaIV GGNNCC 3 cut(s) 613, 859, 1089
NmuCI GTSAC 2 cut(s) 275, 344
PceI AGGCCT 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PctI GAATGC 1 cut(s) 553
PdmI GAANNNNTTC 1 cut(s) 1127
PfeI GAWTC 6 cut(s) 144, 265, 535, 602, 874, 1123
PflFI GACNNNGTC 1 cut(s) 281
PflMI CCANNNNNTGG 2 cut(s) 320, 1115
PkrI GCNGC 4 cut(s) 883, 1024, 1482, 1521
PleI GAGTC 2 cut(s) 427, 1420
PmaCI CACGTG 1 cut(s) 118
PmlI CACGTG 1 cut(s) 118
PpsI GAGTC 2 cut(s) 427, 1420
Ppu21I YACGTR 1 cut(s) 118
Psp6I CCWGG 2 cut(s) 979, 1090
PspCI CACGTG 1 cut(s) 118
PspEI GGTNACC 1 cut(s) 275
PspGI CCWGG 2 cut(s) 979, 1090
PspN4I GGNNCC 3 cut(s) 613, 859, 1089
PspPI GGNCC 3 cut(s) 1094, 1289, 1438
PstI CTGCAG 2 cut(s) 1039, 1468
PsyI GACNNNGTC 1 cut(s) 281
PvuII CAGCTG 3 cut(s) 317, 881, 1483
RsaI GTAC 5 cut(s) 370, 1089, 1141, 1302, 1387
RsaNI GTAC 5 cut(s) 369, 1088, 1140, 1301, 1386
SaqAI TTAA 4 cut(s) 59, 947, 969, 1155
SatI GCNGC 4 cut(s) 882, 1023, 1481, 1520
Sau3AI GATC 3 cut(s) 763, 927, 1118
Sau96I GGNCC 3 cut(s) 1094, 1289, 1438
SchI GAGTC 2 cut(s) 428, 1420
ScrFI CCNGG 2 cut(s) 981, 1092
SexAI ACCWGGT 1 cut(s) 1090
SfaNI GCATC 6 cut(s) 25, 99, 214, 1142, 1366, 1552
SfcI CTRYAG 2 cut(s) 1035, 1464
SinI GGWCC 3 cut(s) 1094, 1289, 1438
SmlI CTYRAG 4 cut(s) 648, 892, 1314, 1368
SmoI CTYRAG 4 cut(s) 648, 892, 1314, 1368
Sse9I AATT 5 cut(s) 677, 901, 965, 1174, 1208
SseBI AGGCCT 1 cut(s) 68
SsiI CCGC 1 cut(s) 1496
StuI AGGCCT 1 cut(s) 68
StyD4I CCNGG 2 cut(s) 979, 1090
StyI CCWWGG 1 cut(s) 1456
TaaI ACNGT 4 cut(s) 373, 775, 1048, 1255
TaiI ACGT 2 cut(s) 120, 1417
TaqI TCGA 2 cut(s) 108, 1121
TaqII GACCGA 1 cut(s) 1306
TasI AATT 5 cut(s) 677, 901, 965, 1174, 1208
TatI WGTACW 1 cut(s) 1300
TfiI GAWTC 6 cut(s) 144, 265, 535, 602, 874, 1123
Tru1I TTAA 4 cut(s) 59, 947, 969, 1155
Tru9I TTAA 4 cut(s) 59, 947, 969, 1155
TscAI CASTG 6 cut(s) 160, 537, 803, 1044, 1053, 1204
TseFI GTSAC 2 cut(s) 275, 344
TseI GCWGC 4 cut(s) 881, 1022, 1480, 1519
Tsp45I GTSAC 2 cut(s) 275, 344
TspDTI ATGAA 5 cut(s) 45, 186, 467, 635, 1492
TspRI CASTG 6 cut(s) 160, 537, 803, 1044, 1053, 1204
Tth111I GACNNNGTC 1 cut(s) 281
Van91I CCANNNNNTGG 2 cut(s) 320, 1115
VpaK11BI GGWCC 3 cut(s) 1094, 1289, 1438
XapI RAATTY 1 cut(s) 965
XcmI CCANNNNNNNNNTGG 2 cut(s) 1081, 1112
XmiI GTMKAC 1 cut(s) 135
XmnI GAANNNNTTC 1 cut(s) 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.