Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001651

Physical Location & Seq

Genomic Coordinates Forward (+)

33233442 .. 33240021

Gene Structure 6580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG302100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGCAGATTAGAGAATCCTCTGGTGCCAGGATGAACAGGAGACAGGTGGATGATGGGTCTCAAGGGAAGCAGGATGATTTCAACCAGAAATTAGAGGTTTATAGGAAAGAAAGTGCTGACAAAGTTCAGGATACAAAGATGACATCCAAGCTCTCCCCTTTCGGAGTATCTTGTGATCCTTCTACTGTAATAGTTCAACAAGACATTCAGTGCTGTGAAAGGACAACTTCAGAATACACTTCTTCCAGTTCAAATGTTGTTTCTTCAGGTTCCTCAACTTTGTTGAATCCAGCTGCTAATGTCTCAAGTCGTAATTCAGAAACAACATCAACTGAAATGATCCCTCATGGTTCAGAGTTAAATAAAAGTGGCAAGGAATTTAAGCTCAACCCAGGAGCAAAAGTATTCTCGCCATCTTTTACAAAGCCCATAGCAGCCACCTCTCCTGCAGTGCCAACAGTGGCAAGCATGGGTTTTATACCAACCAACTGCCCCGTGGTACCTGGTCCTGCCGTCCAGCCAGAAGTTGGATCGAATCCTTTCGCATCCCGTACATCTGTGCCTGTTAAGGTTCTCCCATACAATAATTTCACAACTGGGAATGGTAGCAGTGCTTCTCAATTTTCACAACCTATTGTTGGACACATGAGCAGTAGGGCGCAGACAGTTAGGTATGCTGGTCAGTATCCTGTTCAGGCTGGACCGACCTATGTGCATCCAAATACTCAAGCTGTTATGGTAGGACGATTTGGACAGCTTGTCTATGTGCATCCAGTTTCTCAAGATTTGGTTCAGGGTACACCAGCCATCTCACCACTATCTGCACGTCCTATGTTGACTCCACATCAGGTCCAGTTTCCGAAGCACCAAGGTATGGACCATTCTATTACCTTTATGATGAATCCGGTCCAGCAATTTATGTGTTTGTGTAAAATGTTCATGTTTGGAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2 SM-ATX

Protein Analysis

317

Amino Acids

34.26

Weight (kDa)

9.12

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001651)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26990 AT5G54920 AT5G54920
fragaria_vesca	FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540 FvH4_3g22540
malus_domestica	MD03G1202100.v1.1
prunus_persica	Prupe.4G211900_v2.0.a1 Prupe.4G211900_v2.0.a1 Prupe.4G211900_v2.0.a1
pyrus_communis	pycom03g15350
rosa_chinensis	RchiOBHm_Chr3g0473871 RchiOBHm_Chr5g0039281 RchiOBHm_Chr6g0266511
rosa_laevigata	RLG00000014150 RLG00000033903
rosa_multiflora	Rmu_sc0002080.1_g000048 Rmu_sc0002833.1_g000019 Rmu_sc0002911.1_g000009 Rmu_sc0006382.1_g000007 Rmu_ssc0000410.1_g000049
rosa_roxburghii	Rroxscaffold_1G00040480 Rroxscaffold_1G00041860 Rroxscaffold_4G00326800 Rroxscaffold_7G00192420
rosa_rugosa	Rorug05G0086200 Rorug05G0177600.1 Rorug05G0177700 Rorug05G0177700 Rorug06G0099600
rosa_samantha	Rh1BG106300 Rh2AG262700 Rh2CG308300 Rh2CG337800 Rh3AG070700 Rh3BG073200 Rh3CG071700 Rh4CG053500 Rh5AG264100 Rh5BG269200 Rh5CG302100 Rh5DG276800 Rh6BG146700 Rh6BG146800
rosa_wichuraiana	Rw5G024770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	499
AccB1I	GGYRCC	2 cut(s)	23, 499
AccB7I	CCANNNNNTGG	2 cut(s)	527, 874
AclWI	GGATC	3 cut(s)	170, 334, 538
AcsI	RAATTY	1 cut(s)	377
AcuI	CTGAAG	2 cut(s)	213, 249
AfaI	GTAC	3 cut(s)	501, 553, 799
AfiI	CCNNNNNNNGG	3 cut(s)	527, 638, 874
AgsI	TTSAA	4 cut(s)	82, 197, 252, 286
AhdI	GACNNNNNGTC	1 cut(s)	758
AjiI	CACGTC	1 cut(s)	827
AjnI	CCWGG	3 cut(s)	26, 391, 502
AluBI	AGCT	5 cut(s)	151, 293, 385, 731, 757
AluI	AGCT	5 cut(s)	151, 293, 385, 731, 757
Alw26I	GTCTC	3 cut(s)	34, 63, 307
AlwI	GGATC	3 cut(s)	170, 334, 538
ApeKI	GCWGC	2 cut(s)	293, 434
ApoI	RAATTY	1 cut(s)	377
Asp700I	GAANNNNTTC	1 cut(s)	539
Asp718I	GGTACC	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	661
AspS9I	GGNCC	5 cut(s)	506, 701, 850, 877, 907
AsuHPI	GGTGA	1 cut(s)	804
AvaII	GGWCC	5 cut(s)	506, 701, 850, 877, 907
BanI	GGYRCC	2 cut(s)	23, 499
BarI	GAAGNNNNNNTAC	2 cut(s)	598, 630
BbvI	GCAGC	2 cut(s)	280, 446
BccI	CCATC	3 cut(s)	47, 421, 815
BceAI	ACGGC	1 cut(s)	497
BcgI	CGANNNNNNTGC	2 cut(s)	694, 728
BciT130I	CCWGG	3 cut(s)	28, 393, 504
BciVI	GTATCC	2 cut(s)	124, 696
BcoDI	GTCTC	3 cut(s)	34, 63, 307
BfmI	CTRYAG	1 cut(s)	447
BfuI	GTATCC	2 cut(s)	124, 696
BisI	GCNGC	2 cut(s)	294, 435
BlsI	GCNGC	2 cut(s)	295, 436
Bme1390I	CCNGG	3 cut(s)	28, 393, 504
Bme18I	GGWCC	5 cut(s)	506, 701, 850, 877, 907
BmeRI	GACNNNNNGTC	1 cut(s)	758
BmgBI	CACGTC	1 cut(s)	827
BmgT120I	GGNCC	5 cut(s)	506, 701, 850, 877, 907
BmiI	GGNNCC	3 cut(s)	25, 271, 501
BmrFI	CCNGG	3 cut(s)	28, 393, 504
BmrI	ACTGGG	1 cut(s)	606
BmsI	GCATC	3 cut(s)	554, 724, 778
BmuI	ACTGGG	1 cut(s)	606
BpuEI	CTTGAG	4 cut(s)	45, 289, 711, 765
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	3 cut(s)	391, 495, 868
BsaWI	WCCGGW	1 cut(s)	904
BsaXI	ACNNNNNCTCC	2 cut(s)	387, 417
Bsc4I	CCNNNNNNNGG	3 cut(s)	527, 638, 874
Bse1I	ACTGG	4 cut(s)	246, 601, 773, 853
BseBI	CCWGG	3 cut(s)	28, 393, 504
BseDI	CCNNGG	3 cut(s)	391, 495, 868
BseGI	GGATG	7 cut(s)	36, 55, 79, 143, 545, 715, 769
BseLI	CCNNNNNNNGG	3 cut(s)	527, 638, 874
BseNI	ACTGG	4 cut(s)	246, 601, 773, 853
BseXI	GCAGC	2 cut(s)	280, 446
BsgI	GTGCAG	1 cut(s)	807
BshNI	GGYRCC	2 cut(s)	23, 499
BsiSI	CCGG	1 cut(s)	905
BslI	CCNNNNNNNGG	3 cut(s)	527, 638, 874
BsmAI	GTCTC	3 cut(s)	34, 63, 307
Bso31I	GGTCTC	1 cut(s)	63
Bsp143I	GATC	3 cut(s)	175, 339, 530
BspLI	GGNNCC	3 cut(s)	25, 271, 501
BspMAI	CTGCAG	1 cut(s)	451
BspPI	GGATC	3 cut(s)	170, 334, 538
BspT107I	GGYRCC	2 cut(s)	23, 499
BspTNI	GGTCTC	1 cut(s)	63
BsrI	ACTGG	4 cut(s)	246, 601, 773, 853
BssECI	CCNNGG	3 cut(s)	391, 495, 868
BssMI	GATC	3 cut(s)	175, 339, 530
BssT1I	CCWWGG	1 cut(s)	868
Bst2UI	CCWGG	3 cut(s)	28, 393, 504
Bst4CI	ACNGT	3 cut(s)	187, 460, 667
BstC8I	GCNNGC	1 cut(s)	466
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	7 cut(s)	36, 55, 79, 143, 545, 715, 769
BstHHI	GCGC	1 cut(s)	661
BstKTI	GATC	3 cut(s)	178, 342, 533
BstMAI	GTCTC	3 cut(s)	34, 63, 307
BstMBI	GATC	3 cut(s)	175, 339, 530
BstNI	CCWGG	3 cut(s)	28, 393, 504
BstSCI	CCNGG	3 cut(s)	26, 391, 502
BstSFI	CTRYAG	1 cut(s)	447
BstV1I	GCAGC	2 cut(s)	280, 446
BsuI	GTATCC	2 cut(s)	124, 696
BtgI	CCRYGG	1 cut(s)	495
BtrI	CACGTC	1 cut(s)	827
BtsCI	GGATG	7 cut(s)	36, 55, 79, 143, 545, 715, 769
BtsI	GCAGTG	2 cut(s)	456, 616
BtsIMutI	CAGTG	4 cut(s)	215, 456, 465, 616
Cac8I	GCNNGC	1 cut(s)	466
CfoI	GCGC	1 cut(s)	661
Cfr13I	GGNCC	5 cut(s)	506, 701, 850, 877, 907
CsiI	ACCWGGT	1 cut(s)	502
Csp6I	GTAC	3 cut(s)	500, 552, 798
CviAII	CATG	4 cut(s)	347, 469, 646, 940
CviQI	GTAC	3 cut(s)	500, 552, 798
DpnI	GATC	3 cut(s)	177, 341, 532
DpnII	GATC	3 cut(s)	175, 339, 530
DriI	GACNNNNNGTC	1 cut(s)	758
Eam1105I	GACNNNNNGTC	1 cut(s)	758
Eco130I	CCWWGG	1 cut(s)	868
Eco31I	GGTCTC	1 cut(s)	63
Eco47I	GGWCC	5 cut(s)	506, 701, 850, 877, 907
Eco57I	CTGAAG	2 cut(s)	213, 249
EcoRII	CCWGG	3 cut(s)	26, 391, 502
EcoT14I	CCWWGG	1 cut(s)	868
ErhI	CCWWGG	1 cut(s)	868
FaeI	CATG	4 cut(s)	350, 472, 649, 943
FalI	AAGNNNNNCTT	2 cut(s)	211, 243
FatI	CATG	4 cut(s)	346, 468, 645, 939
Fnu4HI	GCNGC	2 cut(s)	294, 435
FokI	GGATG	7 cut(s)	43, 62, 86, 130, 532, 702, 756
Fsp4HI	GCNGC	2 cut(s)	294, 435
GlaI	GCGC	1 cut(s)	660
GluI	GCNGC	2 cut(s)	294, 435
HapII	CCGG	1 cut(s)	905
HhaI	GCGC	1 cut(s)	661
Hin1II	CATG	4 cut(s)	350, 472, 649, 943
Hin6I	GCGC	1 cut(s)	659
HinP1I	GCGC	1 cut(s)	659
HincII	GTYRAC	1 cut(s)	837
HindII	GTYRAC	1 cut(s)	837
HinfI	GANTC	5 cut(s)	14, 286, 535, 838, 901
HpaII	CCGG	1 cut(s)	905
HphI	GGTGA	1 cut(s)	804
Hpy166II	GTNNAC	2 cut(s)	800, 837
Hpy188I	TCNGA	5 cut(s)	164, 232, 319, 355, 861
Hpy188III	TCNNGA	2 cut(s)	128, 782
Hpy8I	GTNNAC	2 cut(s)	800, 837
HpyAV	CCTTC	1 cut(s)	189
HpyCH4III	ACNGT	3 cut(s)	187, 460, 667
HpyCH4IV	ACGT	1 cut(s)	826
HpyCH4V	TGCA	5 cut(s)	4, 449, 715, 769, 824
HpySE526I	ACGT	1 cut(s)	826
Hsp92II	CATG	4 cut(s)	350, 472, 649, 943
HspAI	GCGC	1 cut(s)	659
KpnI	GGTACC	1 cut(s)	503
Kzo9I	GATC	3 cut(s)	175, 339, 530
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	2 cut(s)	280, 446
LweI	GCATC	3 cut(s)	554, 724, 778
MabI	ACCWGGT	1 cut(s)	502
MaeII	ACGT	1 cut(s)	826
MalI	GATC	3 cut(s)	177, 341, 532
MboI	GATC	3 cut(s)	175, 339, 530
MboII	GAAGA	2 cut(s)	234, 255
MluCI	AATT	6 cut(s)	89, 313, 377, 586, 620, 914
MlyI	GAGTC	1 cut(s)	832
MmeI	TCCRAC	2 cut(s)	508, 619
MnlI	CCTC	5 cut(s)	28, 88, 283, 354, 451
MroXI	GAANNNNTTC	1 cut(s)	539
MseI	TTAA	3 cut(s)	359, 381, 567
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	905
MspR9I	CCNGG	3 cut(s)	28, 393, 504
MvaI	CCWGG	3 cut(s)	28, 393, 504
NdeII	GATC	3 cut(s)	175, 339, 530
NlaIII	CATG	4 cut(s)	350, 472, 649, 943
NlaIV	GGNNCC	3 cut(s)	25, 271, 501
PdmI	GAANNNNTTC	1 cut(s)	539
PfeI	GAWTC	4 cut(s)	14, 286, 535, 901
PflMI	CCANNNNNTGG	2 cut(s)	527, 874
PkrI	GCNGC	2 cut(s)	295, 436
PleI	GAGTC	1 cut(s)	832
PpsI	GAGTC	1 cut(s)	832
Psp6I	CCWGG	3 cut(s)	26, 391, 502
PspGI	CCWGG	3 cut(s)	26, 391, 502
PspN4I	GGNNCC	3 cut(s)	25, 271, 501
PspPI	GGNCC	5 cut(s)	506, 701, 850, 877, 907
PstI	CTGCAG	1 cut(s)	451
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	501, 553, 799
RsaNI	GTAC	3 cut(s)	500, 552, 798
SaqAI	TTAA	3 cut(s)	359, 381, 567
SatI	GCNGC	2 cut(s)	294, 435
Sau3AI	GATC	3 cut(s)	175, 339, 530
Sau96I	GGNCC	5 cut(s)	506, 701, 850, 877, 907
SchI	GAGTC	1 cut(s)	832
ScrFI	CCNGG	3 cut(s)	28, 393, 504
SexAI	ACCWGGT	1 cut(s)	502
SfaNI	GCATC	3 cut(s)	554, 724, 778
SfcI	CTRYAG	1 cut(s)	447
SinI	GGWCC	5 cut(s)	506, 701, 850, 877, 907
SmlI	CTYRAG	4 cut(s)	60, 304, 726, 780
SmoI	CTYRAG	4 cut(s)	60, 304, 726, 780
Sse9I	AATT	6 cut(s)	89, 313, 377, 586, 620, 914
StyD4I	CCNGG	3 cut(s)	26, 391, 502
StyI	CCWWGG	1 cut(s)	868
TaaI	ACNGT	3 cut(s)	187, 460, 667
TaiI	ACGT	1 cut(s)	829
TaqI	TCGA	1 cut(s)	533
TaqII	GACCGA	1 cut(s)	718
TasI	AATT	6 cut(s)	89, 313, 377, 586, 620, 914
TfiI	GAWTC	4 cut(s)	14, 286, 535, 901
Tru1I	TTAA	3 cut(s)	359, 381, 567
Tru9I	TTAA	3 cut(s)	359, 381, 567
TscAI	CASTG	4 cut(s)	215, 456, 465, 616
TseI	GCWGC	2 cut(s)	293, 434
TspDTI	ATGAA	3 cut(s)	47, 914, 928
TspRI	CASTG	4 cut(s)	215, 456, 465, 616
Van91I	CCANNNNNTGG	2 cut(s)	527, 874
VpaK11BI	GGWCC	5 cut(s)	506, 701, 850, 877, 907
XapI	RAATTY	1 cut(s)	377
XcmI	CCANNNNNNNNNTGG	2 cut(s)	493, 524
XmnI	GAANNNNTTC	1 cut(s)	539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.