Rmu_sc0002911.1_g000009

Ataxin 2 SM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002911.1
OG0001651
Physical Location & Seq
Forward (+)
36217 .. 41292
5076 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002911.1_g000009.1.cds

Sequence Viewer

Length: 576 bp
atggggaaaacaaaagctgaaggttttagattgatcccatcaaaactaaggatgccttttcaaagcctctggttcttggcacaaatcctccccgtctataaagggcgaaaagcaaggataactaaaaagggaaaatctgatgcgaatgtagcaaatagggagttgatagatactcttgttattctttctggtgaccttgtccaagttgttacaaagggagttttacttccagttgatggtgttgctggaaatatgtctggtgacagaattgaagctgttatgggtactgtttcttcttatgagtgttcaaagaatggtgcgaagaagtcaactcttcctaagatgacagttcaggagcacgctactaactttgctgatggtgaattgaaggaagagcttttctgcattagattcgcttcaattgagtctgctagaaaatccgctttatttggttctgaaccttcaaattctattctgaatgttaaggaccaccaggggtttaccaatgcagaaaagatgagcctgaaggacaggcagctcgctgcacagcttattcagagggtgctagattcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

191

Amino Acids

20.93

Weight (kDa)

9.57

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 236
AciI CCGC 1 cut(s) 441
AclWI GGATC 1 cut(s) 28
AcsI RAATTY 1 cut(s) 466
AcuI CTGAAG 2 cut(s) 39, 545
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 236
AgsI TTSAA 6 cut(s) 62, 272, 309, 388, 420, 465
AjnI CCWGG 1 cut(s) 492
AluBI AGCT 5 cut(s) 17, 275, 397, 538, 550
AluI AGCT 5 cut(s) 17, 275, 397, 538, 550
Alw21I GWGCWC 1 cut(s) 360
AlwI GGATC 1 cut(s) 28
ApeKI GCWGC 2 cut(s) 535, 542
ApoI RAATTY 1 cut(s) 466
AspS9I GGNCC 1 cut(s) 487
AsuHPI GGTGA 3 cut(s) 203, 272, 392
AvaII GGWCC 1 cut(s) 487
BaeI ACNNNNGTAYC 2 cut(s) 162, 195
BarI GAAGNNNNNNTAC 2 cut(s) 277, 309
Bbv12I GWGCWC 1 cut(s) 360
BbvI GCAGC 2 cut(s) 529, 547
BccI CCATC 3 cut(s) 46, 230, 371
BcgI CGANNNNNNTGC 2 cut(s) 394, 428
BciT130I CCWGG 1 cut(s) 494
BfaI CTAG 2 cut(s) 432, 566
BisI GCNGC 2 cut(s) 536, 543
BlsI GCNGC 2 cut(s) 537, 544
Bme1390I CCNGG 1 cut(s) 494
Bme18I GGWCC 1 cut(s) 487
BmgT120I GGNCC 1 cut(s) 487
BmrFI CCNGG 1 cut(s) 494
BmsI GCATC 2 cut(s) 42, 130
BsaJI CCNNGG 1 cut(s) 493
BsaXI ACNNNNNCTCC 2 cut(s) 72, 102
Bsc4I CCNNNNNNNGG 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 230
BseBI CCWGG 1 cut(s) 494
BseDI CCNNGG 1 cut(s) 493
BseGI GGATG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 230
BseXI GCAGC 2 cut(s) 529, 547
BsgI GTGCAG 1 cut(s) 528
BsiHKAI GWGCWC 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 236
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 1 cut(s) 33
BspACI CCGC 1 cut(s) 441
BspPI GGATC 1 cut(s) 28
BspQI GCTCTTC 1 cut(s) 387
BsrI ACTGG 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 493
BssMI GATC 1 cut(s) 33
Bst2UI CCWGG 1 cut(s) 494
Bst4CI ACNGT 2 cut(s) 289, 349
Bst6I CTCTTC 2 cut(s) 339, 387
BstC8I GCNNGC 2 cut(s) 360, 540
BstDEI CTNAG 2 cut(s) 47, 339
BstEII GGTNACC 1 cut(s) 191
BstF5I GGATG 1 cut(s) 57
BstKTI GATC 1 cut(s) 36
BstMBI GATC 1 cut(s) 33
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 494
BstPI GGTNACC 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 492
BstV1I GCAGC 2 cut(s) 529, 547
BtsCI GGATG 1 cut(s) 57
Cac8I GCNNGC 2 cut(s) 360, 540
Cfr13I GGNCC 1 cut(s) 487
Csp6I GTAC 1 cut(s) 285
CviJI RGCY 7 cut(s) 17, 66, 275, 397, 522, 538, 550
CviKI_1 RGCY 7 cut(s) 17, 66, 275, 397, 522, 538, 550
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 2 cut(s) 47, 339
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eam1104I CTCTTC 2 cut(s) 339, 387
EarI CTCTTC 2 cut(s) 339, 387
Eco47I GGWCC 1 cut(s) 487
Eco57I CTGAAG 2 cut(s) 39, 545
Eco91I GGTNACC 1 cut(s) 191
EcoO65I GGTNACC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 492
FaiI YATR 4 cut(s) 99, 254, 281, 300
FalI AAGNNNNNCTT 2 cut(s) 40, 72
Fnu4HI GCNGC 2 cut(s) 536, 543
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 2 cut(s) 536, 543
FspBI CTAG 2 cut(s) 432, 566
GluI GCNGC 2 cut(s) 536, 543
HincII GTYRAC 1 cut(s) 330
HindII GTYRAC 1 cut(s) 330
HinfI GANTC 3 cut(s) 411, 425, 569
HphI GGTGA 3 cut(s) 203, 272, 392
Hpy166II GTNNAC 2 cut(s) 330, 501
Hpy188I TCNGA 4 cut(s) 139, 457, 477, 558
Hpy188III TCNNGA 2 cut(s) 353, 573
Hpy8I GTNNAC 2 cut(s) 330, 501
HpyAV CCTTC 4 cut(s) 14, 382, 471, 520
HpyCH4III ACNGT 2 cut(s) 289, 349
HpyCH4V TGCA 3 cut(s) 405, 509, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 2 cut(s) 47, 339
Kzo9I GATC 1 cut(s) 33
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 1 cut(s) 355
Lsp1109I GCAGC 2 cut(s) 529, 547
LweI GCATC 2 cut(s) 42, 130
MaeI CTAG 2 cut(s) 432, 566
MaeIII GTNAC 3 cut(s) 191, 208, 260
MalI GATC 1 cut(s) 35
MboI GATC 1 cut(s) 33
MboII GAAGA 4 cut(s) 285, 326, 334, 404
MfeI CAATTG 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 4 cut(s) 267, 383, 420, 466
MlyI GAGTC 1 cut(s) 434
MnlI CCTC 3 cut(s) 77, 98, 552
MseI TTAA 1 cut(s) 483
MspR9I CCNGG 1 cut(s) 494
MunI CAATTG 1 cut(s) 420
MvaI CCWGG 1 cut(s) 494
MwoI GCNNNNNNNGC 1 cut(s) 149
NdeII GATC 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 191, 260
PciSI GCTCTTC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 411, 569
PflFI GACNNNGTC 1 cut(s) 197
PflMI CCANNNNNTGG 1 cut(s) 236
PkrI GCNGC 2 cut(s) 537, 544
PleI GAGTC 1 cut(s) 433
PpsI GAGTC 1 cut(s) 433
Psp6I CCWGG 1 cut(s) 492
PspEI GGTNACC 1 cut(s) 191
PspGI CCWGG 1 cut(s) 492
PspPI GGNCC 1 cut(s) 487
PsyI GACNNNGTC 1 cut(s) 197
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 1 cut(s) 483
SatI GCNGC 2 cut(s) 536, 543
Sau3AI GATC 1 cut(s) 33
Sau96I GGNCC 1 cut(s) 487
SchI GAGTC 1 cut(s) 434
ScrFI CCNGG 1 cut(s) 494
SduI GDGCHC 1 cut(s) 360
SetI ASST 8 cut(s) 19, 25, 198, 277, 399, 463, 540, 552
SfaNI GCATC 2 cut(s) 42, 130
SinI GGWCC 1 cut(s) 487
Sse9I AATT 4 cut(s) 267, 383, 420, 466
SsiI CCGC 1 cut(s) 441
SspMI CTAG 2 cut(s) 432, 566
StyD4I CCNGG 1 cut(s) 492
TaaI ACNGT 2 cut(s) 289, 349
TasI AATT 4 cut(s) 267, 383, 420, 466
TfiI GAWTC 2 cut(s) 411, 569
Tru1I TTAA 1 cut(s) 483
Tru9I TTAA 1 cut(s) 483
TseFI GTSAC 2 cut(s) 191, 260
TseI GCWGC 2 cut(s) 535, 542
Tsp45I GTSAC 2 cut(s) 191, 260
Tth111I GACNNNGTC 1 cut(s) 197
Van91I CCANNNNNTGG 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 487
XapI RAATTY 1 cut(s) 466
XspI CTAG 2 cut(s) 432, 566
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.