RchiOBHm_Chr3g0473871

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001651
Physical Location & Seq
Reverse (-)
19610892 .. 19612032
1141 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43952

Sequence Viewer

Length: 231 bp
ATGGAGCTATGGAGGTCCCCGGAGCGGTCGCAATCTCGTCTACGATACATGTGTATCAACGGGTGTATGACCAATCCGGTGGAATTTTCTAAGCTTGTTGAGTACCAACAAAGGCTTTGCAGCAGCAAACAGTGTCAACAGAGCTTTAACGAAGACAAGCTCCATCAAAGCTCTTGCCCGCACTCGCACCCGCACCACATACAGAGGCTCTGTCAAATGAACACAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

9.06

Weight (kDa)

8.64

Isoelectric Point (pI)

85.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 25
AccI GTMKAC 1 cut(s) 40
AciI CCGC 3 cut(s) 25, 179, 191
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 104
AfiI CCNNNNNNNGG 1 cut(s) 24
AflIII ACRYGT 1 cut(s) 48
AluBI AGCT 6 cut(s) 7, 94, 144, 160, 171, 228
AluI AGCT 6 cut(s) 7, 94, 144, 160, 171, 228
ApeKI GCWGC 2 cut(s) 120, 123
ApoI RAATTY 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 15
AsuC2I CCSGG 1 cut(s) 20
AvaII GGWCC 1 cut(s) 15
BaeI ACNNNNGTAYC 4 cut(s) 37, 37, 70, 70
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 2 cut(s) 132, 135
BccI CCATC 1 cut(s) 171
BcnI CCSGG 1 cut(s) 20
BisI GCNGC 2 cut(s) 121, 124
BlsI GCNGC 2 cut(s) 122, 125
Bme1390I CCNGG 1 cut(s) 20
Bme18I GGWCC 1 cut(s) 15
BmgT120I GGNCC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 20
BpiI GAAGAC 1 cut(s) 159
BpuMI CCSGG 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 18
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 132, 135
Bsh1285I CGRYCG 1 cut(s) 29
BsiEI CGRYCG 1 cut(s) 29
BsiSI CCGG 2 cut(s) 20, 77
BslI CCNNNNNNNGG 1 cut(s) 24
BspACI CCGC 3 cut(s) 25, 179, 191
BspLI GGNNCC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 90
BstMCI CGRYCG 1 cut(s) 29
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 2 cut(s) 132, 135
BstV2I GAAGAC 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 15
Csp6I GTAC 1 cut(s) 103
CviAII CATG 1 cut(s) 49
CviJI RGCY 8 cut(s) 7, 94, 115, 144, 160, 171, 208, 228
CviKI_1 RGCY 8 cut(s) 7, 94, 115, 144, 160, 171, 208, 228
CviQI GTAC 1 cut(s) 103
DdeI CTNAG 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 15
FaeI CATG 1 cut(s) 52
FaiI YATR 4 cut(s) 10, 50, 68, 200
FatI CATG 1 cut(s) 48
FauI CCCGC 2 cut(s) 186, 198
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 121, 124
Fsp4HI GCNGC 2 cut(s) 121, 124
GluI GCNGC 2 cut(s) 121, 124
HapII CCGG 2 cut(s) 20, 77
Hin1II CATG 1 cut(s) 52
HincII GTYRAC 1 cut(s) 137
HindII GTYRAC 1 cut(s) 137
HindIII AAGCTT 1 cut(s) 92
HpaII CCGG 2 cut(s) 20, 77
Hpy166II GTNNAC 2 cut(s) 41, 137
Hpy8I GTNNAC 2 cut(s) 41, 137
HpyCH4III ACNGT 1 cut(s) 132
HpyCH4V TGCA 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 90
Hsp92II CATG 1 cut(s) 52
LmnI GCTCC 3 cut(s) 4, 22, 165
LpnPI CCDG 2 cut(s) 33, 90
Lsp1109I GCAGC 2 cut(s) 132, 135
MbiI CCGCTC 1 cut(s) 25
MboII GAAGA 1 cut(s) 164
MluCI AATT 1 cut(s) 83
MnlI CCTC 2 cut(s) 6, 198
MseI TTAA 1 cut(s) 147
MspI CCGG 2 cut(s) 20, 77
MspR9I CCNGG 1 cut(s) 20
NciI CCSGG 1 cut(s) 20
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 17
NspI RCATGY 1 cut(s) 52
PciI ACATGT 1 cut(s) 48
PkrI GCNGC 2 cut(s) 122, 125
PpuMI RGGWCCY 1 cut(s) 15
PscI ACATGT 1 cut(s) 48
Psp5II RGGWCCY 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 1 cut(s) 15
PspPPI RGGWCCY 1 cut(s) 15
RsaI GTAC 1 cut(s) 104
RsaNI GTAC 1 cut(s) 103
SaqAI TTAA 1 cut(s) 147
SatI GCNGC 2 cut(s) 121, 124
Sau96I GGNCC 1 cut(s) 15
ScrFI CCNGG 1 cut(s) 20
SetI ASST 7 cut(s) 9, 17, 96, 146, 162, 173, 230
SinI GGWCC 1 cut(s) 15
Sse9I AATT 1 cut(s) 83
SsiI CCGC 3 cut(s) 25, 179, 191
StyD4I CCNGG 1 cut(s) 18
TaaI ACNGT 1 cut(s) 132
TasI AATT 1 cut(s) 83
Tru1I TTAA 1 cut(s) 147
Tru9I TTAA 1 cut(s) 147
TscAI CASTG 1 cut(s) 137
TseI GCWGC 2 cut(s) 120, 123
TspRI CASTG 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 15
XapI RAATTY 1 cut(s) 83
XceI RCATGY 1 cut(s) 52
XmiI GTMKAC 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.