RchiOBHm_Chr6g0266511

Ataxin 2 SM domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Reverse (-)
23007586 .. 23008067
482 bp
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UTR
Exon/CDS
Intron
PRQ23901

Sequence Viewer

Length: 225 bp
ATGTCTGGTGACAGAATTGAAGCTGTTATGGGTACTGTTTCTTCTGATGAGTGTTCAAAGAATGGTGCGAAGAATTCAAGTGAGTCTGCCATAAATAAGAAGAAGGGTGGAAGGGTGCTAATGCAAATGGGAATAGTTTTCATGGTGTTACACCCACAAGGGCTGGCAAGGAACATGGAGAGATTGCACTGGAGTCGAGGATGGTTATGGAAGGGGGCGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

8.18

Weight (kDa)

9.74

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 73
AfaI GTAC 1 cut(s) 34
AgsI TTSAA 3 cut(s) 20, 57, 78
AluBI AGCT 1 cut(s) 23
AluI AGCT 1 cut(s) 23
ApoI RAATTY 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 20
BarI GAAGNNNNNNTAC 2 cut(s) 25, 57
BccI CCATC 1 cut(s) 195
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BpmI CTGGAG 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 206
BseNI ACTGG 1 cut(s) 194
BspACI CCGC 1 cut(s) 218
BsrI ACTGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 37
BstC8I GCNNGC 1 cut(s) 165
BstF5I GGATG 1 cut(s) 206
BtsCI GGATG 1 cut(s) 206
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 165
Csp6I GTAC 1 cut(s) 33
CviAII CATG 2 cut(s) 142, 175
CviJI RGCY 2 cut(s) 23, 163
CviKI_1 RGCY 2 cut(s) 23, 163
CviQI GTAC 1 cut(s) 33
EcoRI GAATTC 1 cut(s) 73
FaeI CATG 2 cut(s) 145, 178
FaiI YATR 5 cut(s) 29, 92, 143, 176, 208
FatI CATG 2 cut(s) 141, 174
FokI GGATG 1 cut(s) 213
GsuI CTGGAG 1 cut(s) 211
Hin1II CATG 2 cut(s) 145, 178
HinfI GANTC 2 cut(s) 83, 193
HphI GGTGA 1 cut(s) 20
Hpy188I TCNGA 1 cut(s) 46
HpyAV CCTTC 3 cut(s) 97, 105, 205
HpyCH4III ACNGT 1 cut(s) 37
HpyCH4V TGCA 2 cut(s) 124, 187
Hsp92II CATG 2 cut(s) 145, 178
LpnPI CCDG 2 cut(s) 149, 175
MaeIII GTNAC 2 cut(s) 8, 147
MboII GAAGA 3 cut(s) 33, 82, 112
MluCI AATT 2 cut(s) 15, 73
MlyI GAGTC 2 cut(s) 92, 202
MnlI CCTC 1 cut(s) 191
NlaIII CATG 2 cut(s) 145, 178
NmuCI GTSAC 1 cut(s) 8
PleI GAGTC 2 cut(s) 91, 201
PpsI GAGTC 2 cut(s) 91, 201
RsaI GTAC 1 cut(s) 34
RsaNI GTAC 1 cut(s) 33
SchI GAGTC 2 cut(s) 92, 202
SetI ASST 1 cut(s) 25
SgeI CNNG 9 cut(s) 18, 90, 154, 170, 176, 180, 187, 202, 209
Sse9I AATT 2 cut(s) 15, 73
SsiI CCGC 1 cut(s) 218
TaaI ACNGT 1 cut(s) 37
TaqI TCGA 1 cut(s) 196
TasI AATT 2 cut(s) 15, 73
TscAI CASTG 1 cut(s) 194
TseFI GTSAC 1 cut(s) 8
Tsp45I GTSAC 1 cut(s) 8
TspDTI ATGAA 1 cut(s) 130
TspRI CASTG 1 cut(s) 194
XapI RAATTY 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.