Rroxscaffold_1G00040480

Ataxin 2 SM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0001651
Physical Location & Seq
Forward (+)
58210698 .. 58217211
6514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00040480.1

Sequence Viewer

Length: 1557 bp
ATGGGGTGCAGAAACAGAGAGCTCACAGAAGATGATGCCGTTTCTTCTTCTCTTTCTTCATTAAGTGAGGCCTTGCTGTTTGCGACCATGTGCATCATTGGTCTCCCAGTCGATGTTCACGTCAAGGACGGCTCTGTCTACTCCGGAATCTTCCACACTGCTTCTGTGGAAAATGAATACGGCATTGTTTTGAAGAAAGCAAGGATGACTAAAAAGGGAAAATCTGATGCAAATGTAGCAAATGGGGAGTTGATAGATACTCTTGTGATTCTTTCTGGTGATCTTGTCCAAGTTGTTACAAAGGGAGTTTTACTTCCAGCTGATGGTGTTGCTGGAAATATGTCTGGTGACAGAACTGAAGCTGTTACGGGTACTGTTTCTTCCGATGAGTGTTCAAAGAATGGTGCGAAGAAGTCAAGTGAGTCTGCCATAAATAAGAAGAAGGGTGGAAGGGTGCTAATGCAAAATGGGAATGGCTTTCATGGTGTTACACCCACAAGGGCTGTCAAGGAACATGGAGGGAGGAAAATGCCACTGAATCATATTGAGAATGCCTCAGAACTTGAAAATAAGAGAAGTGATGAGATTAGAGAATCCTCTGGTGCCAGCATGAAGAGGAGACAGGTGGATGATGGGTCTCAAGGGAAGCAGGATGATTTCAACCAGAAATTAGAGGTTTATAGGAAAGAAAGTGCTGACAAAGTTCAGGATACAAAGATGACATCCAAGCTCTCCCCTTTCGGATTATCTTGTGATCCTTCTACTGTAATAGTTCAACAAGACATTCAGTGCTGTGAAAGGACAACTTCAGAATACACTTCTTCCAGTTCAAATGTTGTTTCTTCAGGTTCCTCAACTTTGTTGAATCCAGCTGCTAATGTCTCAAGTCGTAATTCAGAAACAACATCAACTGAAATGATCCCTCATGGTTCAGAGTTAAATAAAAGTGGCAAGGAATTTAAGCTCAACCCAGGAGCAAAAGTATTCTCGCCGTCTTTTACAAAGCCCACCTCTCCTGCAGTGCCAACAGTGGCAAGCATGGGTTTTATGCCAACCAACTGCCCCGTGGTACCTGGTCCTGCCGTCCAGCCAGAAGTTGGATCAAATCCTTTCGCATCCCGTACATCTGTGCCTGTTAAGGTTCTCCCATACAATAATTTCACAACTGGGAATGGTAGCAGTGCTTCTCAATTTTCACAACCTATTGTTGGACACATGAGCAGTAGGGCACAGACAGTTAGGTATGCTGGTCAGTATCCTGTTCAGGCTGGACCGACCTATGTGCATCCAAATACTCAAGCTGTTATGGTAGGACGATTTGGACAGCTTGTCTATTTGCATCCAGTTTCTCAAGATTTGGGTCAGGGTACACCAGCCATCTCACCACTATCTGCACGTCCTATGTTGACTCCACATCAGGTCCAGTTTCCGAAGCACCAAGGAACTGCAGGCCAAGCATTGCAGCTGTGTGTGCCTCCGCAGTTCATGGCTACTGGACAGCAGCCTTTTCCCATTGCCAAGTCGCATCCGATTTTTGCAACCTCCCTTCCGTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

518

Amino Acids

55.08

Weight (kDa)

8.75

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SM-ATX PF14438 23 - 100 1.8e-25 Ataxin 2 SM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 134
Acc65I GGTACC 1 cut(s) 1069
AccB1I GGYRCC 2 cut(s) 602, 1069
AccB7I CCANNNNNTGG 2 cut(s) 323, 1097
AccI GTMKAC 1 cut(s) 138
AccIII TCCGGA 1 cut(s) 143
AciI CCGC 1 cut(s) 1478
AclWI GGATC 3 cut(s) 749, 913, 1108
AcsI RAATTY 1 cut(s) 956
AcuI CTGAAG 3 cut(s) 378, 792, 828
AfaI GTAC 4 cut(s) 373, 1071, 1123, 1369
AfiI CCNNNNNNNGG 3 cut(s) 323, 1097, 1208
AgsI TTSAA 7 cut(s) 193, 396, 566, 661, 776, 831, 865
AhdI GACNNNNNGTC 1 cut(s) 1328
AjiI CACGTC 2 cut(s) 121, 1397
AjnI CCWGG 2 cut(s) 970, 1072
AluBI AGCT 9 cut(s) 22, 320, 362, 730, 872, 964, 1301, 1327, 1465
AluI AGCT 9 cut(s) 22, 320, 362, 730, 872, 964, 1301, 1327, 1465
Alw21I GWGCWC 1 cut(s) 24
Alw26I GTCTC 4 cut(s) 107, 613, 642, 886
AlwI GGATC 3 cut(s) 749, 913, 1108
Aor13HI TCCGGA 1 cut(s) 143
AoxI GGCC 2 cut(s) 69, 1450
ApeKI GCWGC 3 cut(s) 872, 1462, 1501
ApoI RAATTY 1 cut(s) 956
Asp718I GGTACC 1 cut(s) 1069
AspS9I GGNCC 3 cut(s) 1076, 1271, 1420
AsuHPI GGTGA 3 cut(s) 290, 359, 1374
AvaII GGWCC 3 cut(s) 1076, 1271, 1420
BaeGI GKGCMC 1 cut(s) 1231
BaeI ACNNNNGTAYC 2 cut(s) 249, 282
BanI GGYRCC 2 cut(s) 602, 1069
BanII GRGCYC 1 cut(s) 24
BarI GAAGNNNNNNTAC 4 cut(s) 364, 396, 1168, 1200
Bbv12I GWGCWC 1 cut(s) 24
BbvI GCAGC 3 cut(s) 859, 1474, 1513
BccI CCATC 3 cut(s) 317, 626, 1385
BceAI ACGGC 5 cut(s) 23, 145, 196, 976, 1067
BcgI CGANNNNNNTGC 2 cut(s) 1264, 1298
BciT130I CCWGG 2 cut(s) 972, 1074
BciVI GTATCC 2 cut(s) 703, 1266
BcoDI GTCTC 4 cut(s) 107, 613, 642, 886
BfmI CTRYAG 2 cut(s) 1017, 1446
BfuI GTATCC 2 cut(s) 703, 1266
BisI GCNGC 3 cut(s) 873, 1463, 1502
BlsI GCNGC 3 cut(s) 874, 1464, 1503
Bme1390I CCNGG 2 cut(s) 972, 1074
Bme18I GGWCC 3 cut(s) 1076, 1271, 1420
BmeRI GACNNNNNGTC 1 cut(s) 1328
BmgBI CACGTC 2 cut(s) 121, 1397
BmgT120I GGNCC 3 cut(s) 1076, 1271, 1420
BmiI GGNNCC 3 cut(s) 604, 850, 1071
BmrFI CCNGG 2 cut(s) 972, 1074
BmrI ACTGGG 2 cut(s) 101, 1176
BmsI GCATC 7 cut(s) 25, 102, 217, 1124, 1294, 1348, 1534
BmuI ACTGGG 2 cut(s) 101, 1176
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpuEI CTTGAG 4 cut(s) 624, 868, 1281, 1335
BsaI GGTCTC 2 cut(s) 107, 642
BsaJI CCNNGG 3 cut(s) 970, 1065, 1438
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 966, 996
Bsc4I CCNNNNNNNGG 3 cut(s) 323, 1097, 1208
Bse1I ACTGG 6 cut(s) 107, 825, 1171, 1343, 1423, 1498
Bse3DI GCAATG 2 cut(s) 1457, 1512
BseAI TCCGGA 1 cut(s) 143
BseBI CCWGG 2 cut(s) 972, 1074
BseDI CCNNGG 3 cut(s) 970, 1065, 1438
BseGI GGATG 8 cut(s) 210, 634, 658, 722, 1115, 1285, 1339, 1525
BseLI CCNNNNNNNGG 3 cut(s) 323, 1097, 1208
BseMI GCAATG 2 cut(s) 1457, 1512
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 6 cut(s) 107, 825, 1171, 1343, 1423, 1498
BseRI GAGGAG 1 cut(s) 631
BseSI GKGCMC 1 cut(s) 1231
BseXI GCAGC 3 cut(s) 859, 1474, 1513
BsgI GTGCAG 2 cut(s) 28, 1377
BshFI GGCC 2 cut(s) 71, 1452
BshNI GGYRCC 2 cut(s) 602, 1069
BsiHKAI GWGCWC 1 cut(s) 24
BsiSI CCGG 1 cut(s) 144
BslI CCNNNNNNNGG 3 cut(s) 323, 1097, 1208
BsmAI GTCTC 4 cut(s) 107, 613, 642, 886
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 2 cut(s) 71, 1452
Bso31I GGTCTC 2 cut(s) 107, 642
Bsp1286I GDGCHC 2 cut(s) 24, 1231
Bsp13I TCCGGA 1 cut(s) 143
Bsp143I GATC 4 cut(s) 280, 754, 918, 1100
BspACI CCGC 1 cut(s) 1478
BspANI GGCC 2 cut(s) 71, 1452
BspCNI CTCAG 1 cut(s) 569
BspEI TCCGGA 1 cut(s) 143
BspLI GGNNCC 3 cut(s) 604, 850, 1071
BspMAI CTGCAG 2 cut(s) 1021, 1450
BspPI GGATC 3 cut(s) 749, 913, 1108
BspT107I GGYRCC 2 cut(s) 602, 1069
BspTNI GGTCTC 2 cut(s) 107, 642
BsrDI GCAATG 2 cut(s) 1457, 1512
BsrI ACTGG 6 cut(s) 107, 825, 1171, 1343, 1423, 1498
BssECI CCNNGG 3 cut(s) 970, 1065, 1438
BssMI GATC 4 cut(s) 280, 754, 918, 1100
BssT1I CCWWGG 1 cut(s) 1438
Bst2UI CCWGG 2 cut(s) 972, 1074
Bst4CI ACNGT 4 cut(s) 376, 766, 1030, 1237
Bst6I CTCTTC 1 cut(s) 608
BstC8I GCNNGC 3 cut(s) 607, 1036, 1450
BstDEI CTNAG 1 cut(s) 556
BstDSI CCRYGG 1 cut(s) 1065
BstF5I GGATG 8 cut(s) 210, 634, 658, 722, 1115, 1285, 1339, 1525
BstKTI GATC 4 cut(s) 283, 757, 921, 1103
BstMAI GTCTC 4 cut(s) 107, 613, 642, 886
BstMBI GATC 4 cut(s) 280, 754, 918, 1100
BstMWI GCNNNNNNNGC 3 cut(s) 236, 1454, 1471
BstNI CCWGG 2 cut(s) 972, 1074
BstSCI CCNGG 2 cut(s) 970, 1072
BstSFI CTRYAG 2 cut(s) 1017, 1446
BstSLI GKGCMC 1 cut(s) 1231
BstV1I GCAGC 3 cut(s) 859, 1474, 1513
BsuI GTATCC 2 cut(s) 703, 1266
BsuRI GGCC 2 cut(s) 71, 1452
BtgI CCRYGG 1 cut(s) 1065
BtrI CACGTC 2 cut(s) 121, 1397
BtsCI GGATG 8 cut(s) 210, 634, 658, 722, 1115, 1285, 1339, 1525
BtsI GCAGTG 3 cut(s) 156, 1026, 1186
BtsIMutI CAGTG 6 cut(s) 156, 533, 794, 1026, 1035, 1186
Cac8I GCNNGC 3 cut(s) 607, 1036, 1450
Cfr13I GGNCC 3 cut(s) 1076, 1271, 1420
CsiI ACCWGGT 1 cut(s) 1072
Csp6I GTAC 4 cut(s) 372, 1070, 1122, 1368
CviAII CATG 8 cut(s) 88, 482, 515, 610, 926, 1039, 1216, 1486
CviQI GTAC 4 cut(s) 372, 1070, 1122, 1368
DdeI CTNAG 1 cut(s) 556
DpnI GATC 4 cut(s) 282, 756, 920, 1102
DpnII GATC 4 cut(s) 280, 754, 918, 1100
DrdI GACNNNNNNGTC 1 cut(s) 134
DriI GACNNNNNGTC 1 cut(s) 1328
DseDI GACNNNNNNGTC 1 cut(s) 134
Eam1104I CTCTTC 1 cut(s) 608
Eam1105I GACNNNNNGTC 1 cut(s) 1328
EarI CTCTTC 1 cut(s) 608
Ecl136II GAGCTC 1 cut(s) 22
Eco130I CCWWGG 1 cut(s) 1438
Eco147I AGGCCT 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 24
Eco31I GGTCTC 2 cut(s) 107, 642
Eco47I GGWCC 3 cut(s) 1076, 1271, 1420
Eco53kI GAGCTC 1 cut(s) 22
Eco57I CTGAAG 3 cut(s) 378, 792, 828
EcoICRI GAGCTC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 970, 1072
EcoT14I CCWWGG 1 cut(s) 1438
EcoT38I GRGCYC 1 cut(s) 24
ErhI CCWWGG 1 cut(s) 1438
FaeI CATG 8 cut(s) 91, 485, 518, 613, 929, 1042, 1219, 1489
FalI AAGNNNNNCTT 2 cut(s) 790, 822
FatI CATG 8 cut(s) 87, 481, 514, 609, 925, 1038, 1215, 1485
FblI GTMKAC 1 cut(s) 138
Fnu4HI GCNGC 3 cut(s) 873, 1463, 1502
FokI GGATG 8 cut(s) 217, 641, 665, 709, 1102, 1272, 1326, 1512
FriOI GRGCYC 1 cut(s) 24
Fsp4HI GCNGC 3 cut(s) 873, 1463, 1502
GluI GCNGC 3 cut(s) 873, 1463, 1502
HaeIII GGCC 2 cut(s) 71, 1452
HapII CCGG 1 cut(s) 144
Hin1II CATG 8 cut(s) 91, 485, 518, 613, 929, 1042, 1219, 1489
HincII GTYRAC 1 cut(s) 1407
HindII GTYRAC 1 cut(s) 1407
HinfI GANTC 7 cut(s) 147, 268, 422, 538, 593, 865, 1408
HpaII CCGG 1 cut(s) 144
HphI GGTGA 3 cut(s) 290, 359, 1374
Hpy166II GTNNAC 4 cut(s) 118, 139, 1370, 1407
Hpy188I TCNGA 9 cut(s) 226, 385, 559, 743, 811, 898, 934, 1431, 1530
Hpy188III TCNNGA 3 cut(s) 144, 707, 1352
Hpy8I GTNNAC 4 cut(s) 118, 139, 1370, 1407
HpyAV CCTTC 4 cut(s) 436, 444, 768, 1556
HpyCH4III ACNGT 4 cut(s) 376, 766, 1030, 1237
HpyCH4IV ACGT 2 cut(s) 120, 1396
HpyF10VI GCNNNNNNNGC 3 cut(s) 236, 1454, 1471
HpyF3I CTNAG 1 cut(s) 556
HpySE526I ACGT 2 cut(s) 120, 1396
Hsp92II CATG 8 cut(s) 91, 485, 518, 613, 929, 1042, 1219, 1489
Kpn2I TCCGGA 1 cut(s) 143
KpnI GGTACC 1 cut(s) 1073
Kzo9I GATC 4 cut(s) 280, 754, 918, 1100
LmnI GCTCC 1 cut(s) 974
Lsp1109I GCAGC 3 cut(s) 859, 1474, 1513
LweI GCATC 7 cut(s) 25, 102, 217, 1124, 1294, 1348, 1534
MabI ACCWGGT 1 cut(s) 1072
MaeII ACGT 2 cut(s) 120, 1396
MaeIII GTNAC 4 cut(s) 295, 347, 364, 487
MalI GATC 4 cut(s) 282, 756, 920, 1102
MboI GATC 4 cut(s) 280, 754, 918, 1100
MhlI GDGCHC 2 cut(s) 24, 1231
MluCI AATT 5 cut(s) 668, 892, 956, 1156, 1190
MlyI GAGTC 2 cut(s) 431, 1402
MmeI TCCRAC 2 cut(s) 1078, 1189
MroI TCCGGA 1 cut(s) 143
MseI TTAA 4 cut(s) 62, 938, 960, 1137
MspA1I CMGCKG 3 cut(s) 320, 872, 1465
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 972, 1074
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 2 cut(s) 972, 1074
MwoI GCNNNNNNNGC 3 cut(s) 236, 1454, 1471
NdeII GATC 4 cut(s) 280, 754, 918, 1100
NlaIII CATG 8 cut(s) 91, 485, 518, 613, 929, 1042, 1219, 1489
NlaIV GGNNCC 3 cut(s) 604, 850, 1071
NmuCI GTSAC 1 cut(s) 347
PceI AGGCCT 1 cut(s) 71
PcsI WCGNNNNNNNCGW 1 cut(s) 117
PctI GAATGC 1 cut(s) 556
PfeI GAWTC 5 cut(s) 147, 268, 538, 593, 865
PflMI CCANNNNNTGG 2 cut(s) 323, 1097
PkrI GCNGC 3 cut(s) 874, 1464, 1503
PleI GAGTC 2 cut(s) 430, 1402
PpsI GAGTC 2 cut(s) 430, 1402
Psp124BI GAGCTC 1 cut(s) 24
Psp6I CCWGG 2 cut(s) 970, 1072
PspGI CCWGG 2 cut(s) 970, 1072
PspN4I GGNNCC 3 cut(s) 604, 850, 1071
PspPI GGNCC 3 cut(s) 1076, 1271, 1420
PstI CTGCAG 2 cut(s) 1021, 1450
PvuII CAGCTG 3 cut(s) 320, 872, 1465
RsaI GTAC 4 cut(s) 373, 1071, 1123, 1369
RsaNI GTAC 4 cut(s) 372, 1070, 1122, 1368
SacI GAGCTC 1 cut(s) 24
SaqAI TTAA 4 cut(s) 62, 938, 960, 1137
SatI GCNGC 3 cut(s) 873, 1463, 1502
Sau3AI GATC 4 cut(s) 280, 754, 918, 1100
Sau96I GGNCC 3 cut(s) 1076, 1271, 1420
SchI GAGTC 2 cut(s) 431, 1402
ScrFI CCNGG 2 cut(s) 972, 1074
SduI GDGCHC 2 cut(s) 24, 1231
SexAI ACCWGGT 1 cut(s) 1072
SfaNI GCATC 7 cut(s) 25, 102, 217, 1124, 1294, 1348, 1534
SfcI CTRYAG 2 cut(s) 1017, 1446
SinI GGWCC 3 cut(s) 1076, 1271, 1420
SmlI CTYRAG 4 cut(s) 639, 883, 1296, 1350
SmoI CTYRAG 4 cut(s) 639, 883, 1296, 1350
Sse9I AATT 5 cut(s) 668, 892, 956, 1156, 1190
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 1 cut(s) 1478
SstI GAGCTC 1 cut(s) 24
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 2 cut(s) 970, 1072
StyI CCWWGG 1 cut(s) 1438
TaaI ACNGT 4 cut(s) 376, 766, 1030, 1237
TaiI ACGT 2 cut(s) 123, 1399
TaqI TCGA 1 cut(s) 111
TaqII GACCGA 1 cut(s) 1288
TasI AATT 5 cut(s) 668, 892, 956, 1156, 1190
TfiI GAWTC 5 cut(s) 147, 268, 538, 593, 865
Tru1I TTAA 4 cut(s) 62, 938, 960, 1137
Tru9I TTAA 4 cut(s) 62, 938, 960, 1137
TscAI CASTG 6 cut(s) 163, 540, 794, 1026, 1035, 1186
TseFI GTSAC 1 cut(s) 347
TseI GCWGC 3 cut(s) 872, 1462, 1501
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 5 cut(s) 48, 189, 470, 626, 1474
TspGWI ACGGA 1 cut(s) 1539
TspRI CASTG 6 cut(s) 163, 540, 794, 1026, 1035, 1186
Van91I CCANNNNNTGG 2 cut(s) 323, 1097
VpaK11BI GGWCC 3 cut(s) 1076, 1271, 1420
XapI RAATTY 1 cut(s) 956
XcmI CCANNNNNNNNNTGG 2 cut(s) 1063, 1094
XmiI GTMKAC 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.