Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Reverse (-)

4181042 .. 4183354

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGGAGTCATGATCAATCACCATTTCCTCGCTTTTATCTTCGGCATCTTAGGAAACGTGATATCCTTCCTTGTATTCCTCGCTCCAGTGCCAACTTTTTATAGAATATACAAGAGAAAATCGACGGAAAGTTTCCAGTCGCTACCGTACCAAGTGTCGCTATTTAGCTGCATGCTATGGCTCTACTACGCATTGATTAAGAAAGACGCTTTTCTCCTAATTACCATCAACTCCTTTGGCTGCGTCGTGGAGACTCTCTACATAGCCATGTTCTTCGCTTACGCCACCAGGGAGAAAAGGATATCGGCTATGAAGTTGTTCATAGCAATGAACGTTGCCTTCTTCTCGTTGATTCTAATGGTAACACATTTCGTGGTTAAAACTCCTCCCCTCCAAGTCTCTGTACTCGGCTGGATTTGTGTTGCCATTTCTGTTTCTGTTTTCGCTGCCCCTCTAATGATCGTGGCTCGTGTGATAAAGACAAAGAGTGTGGAGTACATGCCCTTCACGCTTTCTTTCTTCCTCACTATAAGCGCCGTTATGTGGTTCGCTTATGGTTTATTCCTCAATGACATATGCATAGCGATTCCAAACGTGGTGGGATTCGTACTAGGGCTGTTGCAAATGGTTTTGTACTTGGTTTACAGGAACTCAAATGAGAAACCAGAGAAGATTAATTCGTCAGAACAACAACTTAAGAGTATTGTCGTGATGAGTCCGTTAGGTGTGTCGGAAGTGCACCCAGTTGTGACGGAATCGGTGGACCCACTCTCTGAAGCCGTTCATCATGAGGATCTGTCCAAAGTTACTAAAGTGGAGGAGCCGTCAATTGAAAACGGCAAGTGCTACGTGGAGGCTACTCGTCCTGAAACCGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0001101 GO:0003006 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005887 GO:0006810 GO:0006950 GO:0006970 GO:0007275 GO:0007568 GO:0008150 GO:0008515 GO:0008643 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009751 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010033 GO:0010150 GO:0010154 GO:0010431 GO:0012505 GO:0014070 GO:0015144 GO:0015154 GO:0015157 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0016021 GO:0021700 GO:0022414 GO:0022857 GO:0031090 GO:0031224 GO:0031226 GO:0031984 GO:0032501 GO:0032502 GO:0032504 GO:0032870 GO:0033554 GO:0033993 GO:0034219 GO:0035690 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046677 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048609 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051119 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0061458 GO:0070887 GO:0071214 GO:0071215 GO:0071229 GO:0071236 GO:0071310 GO:0071396 GO:0071407 GO:0071446 GO:0071470 GO:0071495 GO:0071695 GO:0071702 GO:0071944 GO:0090693 GO:0097305 GO:0097306 GO:0098588 GO:0098791 GO:0099402 GO:0104004 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

292

Amino Acids

32.94

Weight (kDa)

8.2

Isoelectric Point (pI)

39.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	13 - 98	2.9e-26	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 218	1.3e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	333
AclWI	GGATC	1 cut(s)	801
AcuI	CTGAAG	1 cut(s)	795
AfaI	GTAC	5 cut(s)	149, 405, 497, 609, 635
AfiI	CCNNNNNNNGG	1 cut(s)	543
AflII	CTTAAG	1 cut(s)	695
AgsI	TTSAA	1 cut(s)	833
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
Alw21I	GWGCWC	1 cut(s)	741
Alw26I	GTCTC	2 cut(s)	245, 403
Alw44I	GTGCAC	1 cut(s)	737
AlwI	GGATC	1 cut(s)	801
ApaLI	GTGCAC	1 cut(s)	737
ApeKI	GCWGC	3 cut(s)	168, 240, 446
AseI	ATTAAT	1 cut(s)	675
Asp700I	GAANNNNTTC	2 cut(s)	317, 780
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	763
AsuHPI	GGTGA	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	763
BaeGI	GKGCMC	1 cut(s)	741
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BauI	CACGAG	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	741
BbvI	GCAGC	3 cut(s)	155, 227, 433
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	4 cut(s)	521, 764, 808, 853
BciT130I	CCWGG	1 cut(s)	289
BclI	TGATCA	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	245, 403
BfaI	CTAG	1 cut(s)	611
BfoI	RGCGCY	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	695
BisI	GCNGC	3 cut(s)	169, 241, 447
BlsI	GCNGC	3 cut(s)	170, 242, 448
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	763
BmgT120I	GGNCC	1 cut(s)	763
BmiI	GGNNCC	2 cut(s)	765, 822
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	737
BmsI	GCATC	1 cut(s)	54
BmuI	ACTGGG	1 cut(s)	737
BpmI	CTGGAG	1 cut(s)	69
BsaAI	YACGTR	1 cut(s)	850
BsaJI	CCNNGG	1 cut(s)	288
BsaXI	ACNNNNNCTCC	2 cut(s)	809, 839
Bsc4I	CCNNNNNNNGG	1 cut(s)	543
Bse1I	ACTGG	3 cut(s)	86, 136, 743
Bse3DI	GCAATG	1 cut(s)	333
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	288
BseLI	CCNNNNNNNGG	1 cut(s)	543
BseMI	GCAATG	1 cut(s)	333
BseNI	ACTGG	3 cut(s)	86, 136, 743
BseRI	GAGGAG	2 cut(s)	375, 833
BseSI	GKGCMC	1 cut(s)	741
BseXI	GCAGC	3 cut(s)	155, 227, 433
BsiHKAI	GWGCWC	1 cut(s)	741
BslI	CCNNNNNNNGG	1 cut(s)	543
BsmAI	GTCTC	2 cut(s)	245, 403
Bsp1286I	GDGCHC	1 cut(s)	741
Bsp143I	GATC	3 cut(s)	12, 459, 793
BspHI	TCATGA	2 cut(s)	9, 787
BspLI	GGNNCC	2 cut(s)	765, 822
BspPI	GGATC	1 cut(s)	801
BspTI	CTTAAG	1 cut(s)	695
BsrDI	GCAATG	1 cut(s)	333
BsrI	ACTGG	3 cut(s)	86, 136, 743
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	3 cut(s)	12, 459, 793
BssSI	CACGAG	1 cut(s)	468
Bst2BI	CACGAG	1 cut(s)	468
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	147, 874
BstAFI	CTTAAG	1 cut(s)	695
BstBAI	YACGTR	1 cut(s)	850
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	49
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	3 cut(s)	15, 462, 796
BstMAI	GTCTC	2 cut(s)	245, 403
BstMBI	GATC	3 cut(s)	12, 459, 793
BstMWI	GCNNNNNNNGC	1 cut(s)	508
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	2 cut(s)	175, 502
BstSCI	CCNGG	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	741
BstV1I	GCAGC	3 cut(s)	155, 227, 433
BstX2I	RGATCY	1 cut(s)	793
BstYI	RGATCY	1 cut(s)	793
BtsIMutI	CAGTG	1 cut(s)	93
Cac8I	GCNNGC	1 cut(s)	173
CciI	TCATGA	2 cut(s)	9, 787
CfoI	GCGC	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	763
CseI	GACGC	2 cut(s)	215, 232
Csp6I	GTAC	5 cut(s)	148, 404, 496, 608, 634
CspCI	CAANNNNNGTGG	4 cut(s)	471, 506, 579, 614
CviAII	CATG	5 cut(s)	10, 172, 268, 499, 788
CviQI	GTAC	5 cut(s)	148, 404, 496, 608, 634
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	3 cut(s)	14, 461, 795
DpnII	GATC	3 cut(s)	12, 459, 793
Eco32I	GATATC	2 cut(s)	63, 303
Eco47I	GGWCC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	795
EcoRII	CCWGG	1 cut(s)	287
EcoRV	GATATC	2 cut(s)	63, 303
EcoT22I	ATGCAT	1 cut(s)	581
FaeI	CATG	5 cut(s)	13, 175, 271, 502, 791
FatI	CATG	5 cut(s)	9, 171, 267, 498, 787
FauNDI	CATATG	1 cut(s)	575
FbaI	TGATCA	1 cut(s)	12
Fnu4HI	GCNGC	3 cut(s)	169, 241, 447
Fsp4HI	GCNGC	3 cut(s)	169, 241, 447
FspBI	CTAG	1 cut(s)	611
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	3 cut(s)	169, 241, 447
GsuI	CTGGAG	1 cut(s)	69
HaeII	RGCGCY	1 cut(s)	537
HgaI	GACGC	2 cut(s)	215, 232
HhaI	GCGC	1 cut(s)	536
Hin1II	CATG	5 cut(s)	13, 175, 271, 502, 791
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HinfI	GANTC	7 cut(s)	6, 253, 352, 586, 603, 715, 755
HphI	GGTGA	1 cut(s)	11
Hpy166II	GTNNAC	3 cut(s)	643, 739, 763
Hpy188I	TCNGA	3 cut(s)	685, 733, 775
Hpy188III	TCNNGA	4 cut(s)	10, 709, 788, 866
Hpy8I	GTNNAC	3 cut(s)	643, 739, 763
Hpy99I	CGWCG	2 cut(s)	127, 248
HpyAV	CCTTC	3 cut(s)	76, 349, 514
HpyCH4III	ACNGT	2 cut(s)	147, 874
HpyCH4IV	ACGT	4 cut(s)	57, 333, 594, 849
HpyCH4V	TGCA	4 cut(s)	171, 579, 622, 739
HpyF10VI	GCNNNNNNNGC	1 cut(s)	508
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	4 cut(s)	57, 333, 594, 849
Hsp92II	CATG	5 cut(s)	13, 175, 271, 502, 791
HspAI	GCGC	1 cut(s)	534
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	3 cut(s)	12, 459, 793
LmnI	GCTCC	2 cut(s)	88, 820
LpnPI	CCDG	8 cut(s)	99, 149, 274, 301, 397, 631, 678, 756
Lsp1109I	GCAGC	3 cut(s)	155, 227, 433
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	1 cut(s)	611
MaeII	ACGT	4 cut(s)	57, 333, 594, 849
MaeIII	GTNAC	3 cut(s)	361, 748, 805
MalI	GATC	3 cut(s)	14, 461, 795
MboI	GATC	3 cut(s)	12, 459, 793
MboII	GAAGA	5 cut(s)	31, 265, 334, 511, 682
MfeI	CAATTG	1 cut(s)	828
MflI	RGATCY	1 cut(s)	793
MhlI	GDGCHC	1 cut(s)	741
MluCI	AATT	3 cut(s)	219, 676, 828
MlyI	GAGTC	3 cut(s)	15, 247, 724
MmeI	TCCRAC	1 cut(s)	711
Mph1103I	ATGCAT	1 cut(s)	581
MroXI	GAANNNNTTC	2 cut(s)	317, 780
MseI	TTAA	4 cut(s)	198, 378, 675, 696
MslI	CAYNNNNRTG	2 cut(s)	266, 326
MspCI	CTTAAG	1 cut(s)	695
MspR9I	CCNGG	1 cut(s)	289
MunI	CAATTG	1 cut(s)	828
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	508
NdeI	CATATG	1 cut(s)	575
NdeII	GATC	3 cut(s)	12, 459, 793
NlaIII	CATG	5 cut(s)	13, 175, 271, 502, 791
NlaIV	GGNNCC	2 cut(s)	765, 822
NmeAIII	GCCGAG	1 cut(s)	387
NmuCI	GTSAC	1 cut(s)	748
NsiI	ATGCAT	1 cut(s)	581
NspI	RCATGY	2 cut(s)	175, 502
PaeI	GCATGC	1 cut(s)	175
PagI	TCATGA	2 cut(s)	9, 787
PdmI	GAANNNNTTC	2 cut(s)	317, 780
PfeI	GAWTC	4 cut(s)	352, 586, 603, 755
PkrI	GCNGC	3 cut(s)	170, 242, 448
PleI	GAGTC	3 cut(s)	14, 247, 723
PpsI	GAGTC	3 cut(s)	14, 247, 723
Ppu21I	YACGTR	1 cut(s)	850
PshBI	ATTAAT	1 cut(s)	675
Psp1406I	AACGTT	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	765, 822
PspPI	GGNCC	1 cut(s)	763
PsuI	RGATCY	1 cut(s)	793
RsaI	GTAC	5 cut(s)	149, 405, 497, 609, 635
RsaNI	GTAC	5 cut(s)	148, 404, 496, 608, 634
RseI	CAYNNNNRTG	2 cut(s)	266, 326
SaqAI	TTAA	4 cut(s)	198, 378, 675, 696
SatI	GCNGC	3 cut(s)	169, 241, 447
Sau3AI	GATC	3 cut(s)	12, 459, 793
Sau96I	GGNCC	1 cut(s)	763
SchI	GAGTC	3 cut(s)	15, 247, 724
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	741
SetI	ASST	6 cut(s)	60, 170, 336, 597, 727, 852
SfaNI	GCATC	1 cut(s)	54
SinI	GGWCC	1 cut(s)	763
SmiMI	CAYNNNNRTG	2 cut(s)	266, 326
SmlI	CTYRAG	1 cut(s)	695
SmoI	CTYRAG	1 cut(s)	695
SphI	GCATGC	1 cut(s)	175
Sse9I	AATT	3 cut(s)	219, 676, 828
SspMI	CTAG	1 cut(s)	611
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	2 cut(s)	147, 874
TaiI	ACGT	4 cut(s)	60, 336, 597, 852
TaqI	TCGA	1 cut(s)	122
TasI	AATT	3 cut(s)	219, 676, 828
TatI	WGTACW	3 cut(s)	403, 495, 633
TfiI	GAWTC	4 cut(s)	352, 586, 603, 755
Tru1I	TTAA	4 cut(s)	198, 378, 675, 696
Tru9I	TTAA	4 cut(s)	198, 378, 675, 696
TscAI	CASTG	1 cut(s)	93
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	3 cut(s)	168, 240, 446
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	4 cut(s)	310, 326, 344, 773
TspGWI	ACGGA	3 cut(s)	140, 708, 767
TspRI	CASTG	1 cut(s)	93
Vha464I	CTTAAG	1 cut(s)	695
VneI	GTGCAC	1 cut(s)	737
VpaK11BI	GGWCC	1 cut(s)	763
VspI	ATTAAT	1 cut(s)	675
XceI	RCATGY	2 cut(s)	175, 502
XmnI	GAANNNNTTC	2 cut(s)	317, 780
XspI	CTAG	1 cut(s)	611
Zsp2I	ATGCAT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.