Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Reverse (-)

9229495 .. 9232078

Gene Structure 2584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1124300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTACAGTAGCAGACAGTCACCATCCTTTGGCATTTACATTTGGAGTTCTAGGAAATCTAGTCTCAACCATGGTTTACTTAGCCCCGGTGCCGACATTTTATCGAATTTACAGGAAAAAATCGACAGAAGGATTCCACTCGGTGCCATATCTGGTAGCAATGTTCAGTTCCATGCTTTGGTTGTACTATGCGTCGCTAAAAAAGAATGCTATGCTGCTCATCACCATTAACTCATTCGGAAGTTTTGCAGAGATGATCTACATCGTCATCTTCGTTGTTTATGCACCAAAGGATGCTAGGAAGCTTACAGTGAAACTATTTGGTATTATGAACGTGGGACTTTTCACCTTGATCCTTGTCGTGTCTCACTTCCTAGTGAGTCGTGCGTACCGGGTCCCAGTTCTTGGATGGATTAATGTTGCCATTTCTACCAGTGTTTTTGCTGCGCCGTTAAGCATTGTGTCACAAGTTATCCGAACAAGAAGTGTCGAATTTATGCCATTTAGGTTATCATTTTTCCTCACACTGAGTGCCATTATGTGGTTTGCATATGGATTGTTCCTCAAGGACATATGTGTCGCAATTCCAAACGTTCTGGGATTTGTGTTGGGACTGCTTCAGATGCTGCTGTATGCGATGTACCGAAACCGAAAGCAGGTGATAATAGAAGATCATGAGAAAAAGCTGCCGGCTGCCACACCAGATCACGTGAAAAACATTGTGATCATAGCCACATTAGCAGCTTCCGAGGTTCATCCGGCGGATGCTCAACCGAACAATCGCAATGATGACGGTGACGTTAATAATAACGCAGCCGTTACAGAGGCAAAGGAGCATGAACAAACGGATGATCATCGTCATGTGGAAAATGCTTCCGTCGAGCTTCAACCTAATGAAACACCATCAGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

306

Amino Acids

34.12

Weight (kDa)

8.52

Isoelectric Point (pI)

34.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	14 - 99	1.7e-24	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 219	1.9e-25	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	649
AasI	GACNNNNNNGTC	1 cut(s)	578
Acc36I	ACCTGC	1 cut(s)	649
AccB1I	GGYRCC	2 cut(s)	91, 145
AccB7I	CCANNNNNTGG	4 cut(s)	31, 180, 407, 543
AciI	CCGC	1 cut(s)	764
AclI	AACGTT	1 cut(s)	594
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	2 cut(s)	108, 494
AcuI	CTGAAG	1 cut(s)	605
AcvI	CACGTG	1 cut(s)	712
AdeI	CACNNNGTG	2 cut(s)	145, 533
AfaI	GTAC	3 cut(s)	188, 392, 644
AfiI	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
AgsI	TTSAA	1 cut(s)	890
AluBI	AGCT	4 cut(s)	307, 688, 746, 886
AluI	AGCT	4 cut(s)	307, 688, 746, 886
Alw26I	GTCTC	2 cut(s)	70, 372
AlwI	GGATC	1 cut(s)	349
AlwNI	CAGNNNCTG	1 cut(s)	628
ApeKI	GCWGC	7 cut(s)	217, 446, 628, 688, 695, 743, 815
ApoI	RAATTY	2 cut(s)	108, 494
AseI	ATTAAT	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	397
AsuC2I	CCSGG	2 cut(s)	89, 395
AsuHPI	GGTGA	5 cut(s)	14, 217, 340, 673, 809
AvaII	GGWCC	1 cut(s)	397
BanI	GGYRCC	2 cut(s)	91, 145
BbrPI	CACGTG	1 cut(s)	712
BbvI	GCAGC	7 cut(s)	204, 433, 615, 675, 682, 755, 827
BccI	CCATC	3 cut(s)	33, 405, 913
BceAI	ACGGC	2 cut(s)	436, 803
BclI	TGATCA	2 cut(s)	726, 853
BcnI	CCSGG	2 cut(s)	89, 395
BcoDI	GTCTC	2 cut(s)	70, 372
BfaI	CTAG	4 cut(s)	53, 62, 300, 377
BfmI	CTRYAG	1 cut(s)	6
BfuAI	ACCTGC	1 cut(s)	649
BisI	GCNGC	7 cut(s)	218, 447, 629, 689, 696, 744, 816
BlsI	GCNGC	7 cut(s)	219, 448, 630, 690, 697, 745, 817
Bme1390I	CCNGG	2 cut(s)	89, 395
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	4 cut(s)	93, 147, 398, 399
BmrFI	CCNGG	2 cut(s)	89, 395
BmrI	ACTGGG	1 cut(s)	395
BmsI	GCATC	3 cut(s)	286, 615, 757
BmuI	ACTGGG	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	2 cut(s)	89, 395
BsaAI	YACGTR	1 cut(s)	712
BsaBI	GATNNNNATC	2 cut(s)	263, 855
BsaJI	CCNNGG	3 cut(s)	72, 87, 750
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
Bse118I	RCCGGY	1 cut(s)	691
Bse1I	ACTGG	2 cut(s)	401, 435
Bse3DI	GCAATG	2 cut(s)	168, 793
Bse8I	GATNNNNATC	2 cut(s)	263, 855
BseDI	CCNNGG	3 cut(s)	72, 87, 750
BseGI	GGATG	6 cut(s)	25, 301, 416, 757, 772, 856
BseJI	GATNNNNATC	2 cut(s)	263, 855
BseLI	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
BseMI	GCAATG	2 cut(s)	168, 793
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	2 cut(s)	401, 435
BseXI	GCAGC	7 cut(s)	204, 433, 615, 675, 682, 755, 827
BshNI	GGYRCC	2 cut(s)	91, 145
BsiSI	CCGG	4 cut(s)	89, 394, 692, 761
BslFI	GGGAC	3 cut(s)	354, 383, 627
BslI	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
BsmAI	GTCTC	2 cut(s)	70, 372
BsmFI	GGGAC	3 cut(s)	354, 383, 627
BsmI	GAATGC	1 cut(s)	214
Bsp143I	GATC	6 cut(s)	258, 354, 673, 706, 726, 853
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	764
BspCNI	CTCAG	1 cut(s)	522
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	4 cut(s)	93, 147, 398, 399
BspMI	ACCTGC	1 cut(s)	649
BspPI	GGATC	1 cut(s)	349
BspT107I	GGYRCC	2 cut(s)	91, 145
BsrDI	GCAATG	2 cut(s)	168, 793
BsrFI	RCCGGY	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	401, 435
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	3 cut(s)	72, 87, 750
BssMI	GATC	6 cut(s)	258, 354, 673, 706, 726, 853
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	4 cut(s)	10, 20, 313, 797
BstBAI	YACGTR	1 cut(s)	712
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	2 cut(s)	82, 530
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	6 cut(s)	25, 301, 416, 757, 772, 856
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	6 cut(s)	261, 357, 676, 709, 729, 856
BstMAI	GTCTC	2 cut(s)	70, 372
BstMBI	GATC	6 cut(s)	258, 354, 673, 706, 726, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 625, 740
BstSCI	CCNGG	2 cut(s)	87, 393
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	7 cut(s)	204, 433, 615, 675, 682, 755, 827
BtgI	CCRYGG	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	653
BtsCI	GGATG	6 cut(s)	25, 301, 416, 757, 772, 856
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	4 cut(s)	318, 442, 527, 918
BveI	ACCTGC	1 cut(s)	649
Cac8I	GCNNGC	1 cut(s)	693
CaiI	CAGNNNCTG	1 cut(s)	628
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	691
Cfr13I	GGNCC	1 cut(s)	397
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	3 cut(s)	187, 391, 643
CviAII	CATG	5 cut(s)	73, 175, 677, 839, 863
CviJI	RGCY	9 cut(s)	5, 86, 307, 688, 695, 734, 746, 818, 886
CviKI_1	RGCY	9 cut(s)	5, 86, 307, 688, 695, 734, 746, 818, 886
CviQI	GTAC	3 cut(s)	187, 391, 643
DdeI	CTNAG	2 cut(s)	82, 530
DpnI	GATC	6 cut(s)	260, 356, 675, 708, 728, 855
DpnII	GATC	6 cut(s)	258, 354, 673, 706, 726, 853
DraIII	CACNNNGTG	2 cut(s)	145, 533
DrdI	GACNNNNNNGTC	1 cut(s)	578
DseDI	GACNNNNNNGTC	1 cut(s)	578
EciI	GGCGGA	1 cut(s)	779
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	605
Eco72I	CACGTG	1 cut(s)	712
EcoO109I	RGGNCCY	1 cut(s)	397
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	5 cut(s)	76, 178, 680, 842, 866
FaqI	GGGAC	3 cut(s)	354, 383, 627
FatI	CATG	5 cut(s)	72, 174, 676, 838, 862
FauNDI	CATATG	2 cut(s)	553, 575
FbaI	TGATCA	2 cut(s)	726, 853
Fnu4HI	GCNGC	7 cut(s)	218, 447, 629, 689, 696, 744, 816
FokI	GGATG	6 cut(s)	12, 308, 423, 744, 779, 863
Fsp4HI	GCNGC	7 cut(s)	218, 447, 629, 689, 696, 744, 816
FspBI	CTAG	4 cut(s)	53, 62, 300, 377
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	7 cut(s)	218, 447, 629, 689, 696, 744, 816
HapII	CCGG	4 cut(s)	89, 394, 692, 761
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	5 cut(s)	76, 178, 680, 842, 866
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	2 cut(s)	135, 382
HpaII	CCGG	4 cut(s)	89, 394, 692, 761
HphI	GGTGA	5 cut(s)	14, 217, 340, 673, 809
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	4 cut(s)	242, 479, 624, 751
Hpy188III	TCNNGA	1 cut(s)	677
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	2 cut(s)	199, 884
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	4 cut(s)	10, 20, 313, 797
HpyCH4IV	ACGT	4 cut(s)	336, 594, 711, 801
HpyCH4V	TGCA	3 cut(s)	251, 287, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 625, 740
HpyF3I	CTNAG	2 cut(s)	82, 530
HpySE526I	ACGT	4 cut(s)	336, 594, 711, 801
Hsp92II	CATG	5 cut(s)	76, 178, 680, 842, 866
HspAI	GCGC	1 cut(s)	449
KflI	GGGWCCC	1 cut(s)	397
KroI	GCCGGC	1 cut(s)	691
KroNI	GCCGGC	1 cut(s)	693
Ksp22I	TGATCA	2 cut(s)	726, 853
Kzo9I	GATC	6 cut(s)	258, 354, 673, 706, 726, 853
LmnI	GCTCC	1 cut(s)	835
Lsp1109I	GCAGC	7 cut(s)	204, 433, 615, 675, 682, 755, 827
LweI	GCATC	3 cut(s)	286, 615, 757
MaeI	CTAG	4 cut(s)	53, 62, 300, 377
MaeII	ACGT	4 cut(s)	336, 594, 711, 801
MaeIII	GTNAC	4 cut(s)	20, 465, 797, 820
MalI	GATC	6 cut(s)	260, 356, 675, 708, 728, 855
MboI	GATC	6 cut(s)	258, 354, 673, 706, 726, 853
MboII	GAAGA	2 cut(s)	265, 683
MluCI	AATT	3 cut(s)	108, 494, 585
MlyI	GAGTC	1 cut(s)	391
MnlI	CCTC	4 cut(s)	533, 575, 745, 820
MroNI	GCCGGC	1 cut(s)	691
MseI	TTAA	4 cut(s)	231, 417, 455, 804
MslI	CAYNNNNRTG	1 cut(s)	861
MspI	CCGG	4 cut(s)	89, 394, 692, 761
MspR9I	CCNGG	2 cut(s)	89, 395
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	11, 625, 740
NaeI	GCCGGC	1 cut(s)	693
NciI	CCSGG	2 cut(s)	89, 395
NcoI	CCATGG	1 cut(s)	72
NdeI	CATATG	2 cut(s)	553, 575
NdeII	GATC	6 cut(s)	258, 354, 673, 706, 726, 853
NgoMIV	GCCGGC	1 cut(s)	691
NlaIII	CATG	5 cut(s)	76, 178, 680, 842, 866
NlaIV	GGNNCC	4 cut(s)	93, 147, 398, 399
NmuCI	GTSAC	3 cut(s)	20, 465, 797
PagI	TCATGA	1 cut(s)	676
PaqCI	CACCTGC	1 cut(s)	649
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PctI	GAATGC	1 cut(s)	214
PdiI	GCCGGC	1 cut(s)	693
PfeI	GAWTC	1 cut(s)	135
PflMI	CCANNNNNTGG	4 cut(s)	31, 180, 407, 543
PkrI	GCNGC	7 cut(s)	219, 448, 630, 690, 697, 745, 817
PleI	GAGTC	1 cut(s)	390
PmaCI	CACGTG	1 cut(s)	712
PmlI	CACGTG	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	390
Ppu21I	YACGTR	1 cut(s)	712
PpuMI	RGGWCCY	1 cut(s)	397
PshBI	ATTAAT	1 cut(s)	417
Psp1406I	AACGTT	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	397
PspCI	CACGTG	1 cut(s)	712
PspN4I	GGNNCC	4 cut(s)	93, 147, 398, 399
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	628
RsaI	GTAC	3 cut(s)	188, 392, 644
RsaNI	GTAC	3 cut(s)	187, 391, 643
RseI	CAYNNNNRTG	1 cut(s)	861
SaqAI	TTAA	4 cut(s)	231, 417, 455, 804
SatI	GCNGC	7 cut(s)	218, 447, 629, 689, 696, 744, 816
Sau3AI	GATC	6 cut(s)	258, 354, 673, 706, 726, 853
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	89, 395
SfaNI	GCATC	3 cut(s)	286, 615, 757
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	861
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	3 cut(s)	108, 494, 585
SsiI	CCGC	1 cut(s)	764
SspMI	CTAG	4 cut(s)	53, 62, 300, 377
StyD4I	CCNGG	2 cut(s)	87, 393
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	4 cut(s)	10, 20, 313, 797
TaiI	ACGT	4 cut(s)	339, 597, 714, 804
TaqI	TCGA	4 cut(s)	106, 125, 492, 882
TasI	AATT	3 cut(s)	108, 494, 585
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	4 cut(s)	231, 417, 455, 804
Tru9I	TTAA	4 cut(s)	231, 417, 455, 804
TscAI	CASTG	4 cut(s)	318, 442, 534, 918
TseFI	GTSAC	3 cut(s)	20, 465, 797
TseI	GCWGC	7 cut(s)	217, 446, 628, 688, 695, 743, 815
Tsp45I	GTSAC	3 cut(s)	20, 465, 797
TspDTI	ATGAA	4 cut(s)	347, 746, 855, 912
TspGWI	ACGGA	2 cut(s)	863, 868
TspRI	CASTG	4 cut(s)	318, 442, 534, 918
Van91I	CCANNNNNTGG	4 cut(s)	31, 180, 407, 543
VpaK11BI	GGWCC	1 cut(s)	397
VspI	ATTAAT	1 cut(s)	417
XapI	RAATTY	2 cut(s)	108, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	408
XspI	CTAG	4 cut(s)	53, 62, 300, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.