Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Reverse (-)

13226851 .. 13228693

Gene Structure 1843 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007065

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGGGCAGTAGCAGACAGTCAACATCCTTGGGCATTTGCATTTGGCATCCTAGGTAATCTAATTTCCTTCATGGTTTACTTAGCCCCAGTGCCAACATTTTACCGGATTTACAGAAAGAGATCGACTGAGGGTTTCCAATCGGTGCCGTATCTGGTAGCACTGTTTAGTGCCACGCTTTGGCTCTACTATGCCATGCTGAAGCAAAATGCTGTGCTTCTCATCACAATCAACACCTTCGGAAGTGTAATAGAGACTCTGTACATCGCCATGTATATTGTTTATGCAACAAAGGCTTCAAGGAAATTCACTATCAAGTTACTTGGGTTTATGAACTTCGGACTCTTCTCCTTGATCCTTGTCATTTTACACTATGCATTTCATAGTCAATACCGTGCCCCGGTTCTCGGATGGATCAACGTTGCCATTTCCGTTTGTGTTTTTGCTGCGCCCTTGAGTATTGTGGCGCAGGTGATCCGCACAAAAAGTGTTGAATTTATGCCATTCAGCTTATCATTCTTCCTTACTTTAAGTGCCGTGATGTGGTTTGCCTATGGACTGTTCCTCAAGGACATTTGCATAGCACTTCCAAATGTGTTAGGTTTTGTCTTGGGTCTCCTTCAGATGCTGCTCTACGCCATATACAGAAACCGCAAGCCGGTCATAGTTGATCCAGAGAAGAAGCTTCCGGCACCAGAGCTTGTGAAAAACATAGTGATTCTGAGCACTATCGCAACATCCGAAGTTCATCCGGTGGATGCTAAGCCATGTGATGGCAATGACGTCGAAGACGTGGACGGCAAAGATGAAAATAAGGACGTTGATGGTGATGAACATGAGAAGTGCGTGGTGGTGGTGGTGGATGTGGATGCATCGGGTGAGCTTCAACTGAAATCTGATGAACCATGTGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

306

Amino Acids

33.99

Weight (kDa)

5.96

Isoelectric Point (pI)

35.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	14 - 98	1.6e-25	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 219	2.2e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
AatII	GACGTC	1 cut(s)	786
Acc36I	ACCTGC	1 cut(s)	460
AccB1I	GGYRCC	2 cut(s)	145, 691
AccB7I	CCANNNNNTGG	2 cut(s)	180, 773
AciI	CCGC	2 cut(s)	478, 652
AclI	AACGTT	1 cut(s)	420
AclWI	GGATC	4 cut(s)	349, 422, 469, 665
AcsI	RAATTY	2 cut(s)	305, 494
AcuI	CTGAAG	2 cut(s)	221, 605
AcyI	GRCGYC	1 cut(s)	783
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	6 cut(s)	180, 400, 407, 543, 658, 773
AgsI	TTSAA	3 cut(s)	300, 494, 887
AjiI	CACGTC	1 cut(s)	793
AluBI	AGCT	4 cut(s)	510, 685, 700, 883
AluI	AGCT	4 cut(s)	510, 685, 700, 883
Alw21I	GWGCWC	1 cut(s)	728
Alw26I	GTCTC	2 cut(s)	248, 620
AlwI	GGATC	4 cut(s)	349, 422, 469, 665
AlwNI	CAGNNNCTG	1 cut(s)	628
ApeKI	GCWGC	2 cut(s)	446, 628
ApoI	RAATTY	2 cut(s)	305, 494
AspA2I	CCTAGG	1 cut(s)	52
AspLEI	GCGC	2 cut(s)	451, 469
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	484, 839, 890
AvrII	CCTAGG	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	400
BanI	GGYRCC	2 cut(s)	145, 691
BbsI	GAAGAC	1 cut(s)	795
Bbv12I	GWGCWC	1 cut(s)	728
BbvI	GCAGC	2 cut(s)	433, 615
BccI	CCATC	3 cut(s)	405, 767, 818
BceAI	ACGGC	3 cut(s)	133, 521, 814
BcgI	CGANNNNNNTGC	2 cut(s)	766, 800
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	2 cut(s)	248, 620
BfaI	CTAG	1 cut(s)	53
BfuAI	ACCTGC	1 cut(s)	460
BisI	GCNGC	2 cut(s)	447, 629
BlnI	CCTAGG	1 cut(s)	52
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	2 cut(s)	448, 630
Bme1390I	CCNGG	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	793
BmiI	GGNNCC	2 cut(s)	147, 693
BmrFI	CCNGG	1 cut(s)	401
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	5 cut(s)	57, 615, 748, 859, 881
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	795
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	2 cut(s)	475, 551
BpuMI	CCSGG	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	3 cut(s)	29, 52, 399
BsaWI	WCCGGW	2 cut(s)	105, 751
Bsc4I	CCNNNNNNNGG	6 cut(s)	180, 400, 407, 543, 658, 773
Bse118I	RCCGGY	1 cut(s)	658
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	784
BseDI	CCNNGG	3 cut(s)	29, 52, 399
BseGI	GGATG	8 cut(s)	25, 48, 416, 737, 748, 763, 868, 874
BseLI	CCNNNNNNNGG	6 cut(s)	180, 400, 407, 543, 658, 773
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	2 cut(s)	120, 713
BseNI	ACTGG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	2 cut(s)	433, 615
BshNI	GGYRCC	2 cut(s)	145, 691
BsiHKAI	GWGCWC	1 cut(s)	728
BsiSI	CCGG	5 cut(s)	106, 401, 659, 689, 752
BslI	CCNNNNNNNGG	6 cut(s)	180, 400, 407, 543, 658, 773
BsmAI	GTCTC	2 cut(s)	248, 620
Bso31I	GGTCTC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	400, 728
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	5 cut(s)	122, 354, 414, 474, 670
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	2 cut(s)	478, 652
BspCNI	CTCAG	2 cut(s)	121, 714
BspLI	GGNNCC	2 cut(s)	147, 693
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	4 cut(s)	349, 422, 469, 665
BspT107I	GGYRCC	2 cut(s)	145, 691
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	784
BsrFI	RCCGGY	1 cut(s)	658
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	658
BssECI	CCNNGG	3 cut(s)	29, 52, 399
BssMI	GATC	5 cut(s)	122, 354, 414, 474, 670
BssNI	GRCGYC	1 cut(s)	783
BssT1I	CCWWGG	2 cut(s)	29, 52
Bst4CI	ACNGT	4 cut(s)	20, 165, 395, 561
Bst6I	CTCTTC	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	783
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	4 cut(s)	82, 129, 722, 762
BstF5I	GGATG	8 cut(s)	25, 48, 416, 737, 748, 763, 868, 874
BstHHI	GCGC	2 cut(s)	451, 469
BstKTI	GATC	5 cut(s)	125, 357, 417, 477, 673
BstMAI	GTCTC	2 cut(s)	248, 620
BstMBI	GATC	5 cut(s)	122, 354, 414, 474, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	2 cut(s)	433, 615
BstV2I	GAAGAC	1 cut(s)	795
BtgZI	GCGATG	1 cut(s)	250
BtrI	CACGTC	1 cut(s)	793
BtsCI	GGATG	8 cut(s)	25, 48, 416, 737, 748, 763, 868, 874
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	3 cut(s)	96, 161, 918
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	656
CaiI	CAGNNNCTG	1 cut(s)	628
CfoI	GCGC	2 cut(s)	451, 469
Cfr10I	RCCGGY	1 cut(s)	658
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	6 cut(s)	73, 196, 271, 768, 836, 906
CviJI	RGCY	9 cut(s)	86, 184, 296, 510, 658, 685, 700, 766, 883
CviKI_1	RGCY	9 cut(s)	86, 184, 296, 510, 658, 685, 700, 766, 883
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	4 cut(s)	82, 129, 722, 762
DpnI	GATC	5 cut(s)	124, 356, 416, 476, 672
DpnII	GATC	5 cut(s)	122, 354, 414, 474, 670
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	29, 52
Eco31I	GGTCTC	1 cut(s)	620
Eco57I	CTGAAG	2 cut(s)	221, 605
EcoT14I	CCWWGG	2 cut(s)	29, 52
EcoT22I	ATGCAT	2 cut(s)	379, 874
ErhI	CCWWGG	2 cut(s)	29, 52
FaeI	CATG	6 cut(s)	76, 199, 274, 771, 839, 909
FatI	CATG	6 cut(s)	72, 195, 270, 767, 835, 905
Fnu4HI	GCNGC	2 cut(s)	447, 629
FokI	GGATG	8 cut(s)	12, 35, 423, 724, 735, 770, 875, 881
Fsp4HI	GCNGC	2 cut(s)	447, 629
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	2 cut(s)	450, 468
GluI	GCNGC	2 cut(s)	447, 629
HapII	CCGG	5 cut(s)	106, 401, 659, 689, 752
HhaI	GCGC	2 cut(s)	451, 469
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	6 cut(s)	76, 199, 274, 771, 839, 909
Hin6I	GCGC	2 cut(s)	449, 467
HinP1I	GCGC	2 cut(s)	449, 467
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	3 cut(s)	256, 342, 718
HpaII	CCGG	5 cut(s)	106, 401, 659, 689, 752
HphI	GGTGA	3 cut(s)	484, 839, 890
Hpy166II	GTNNAC	3 cut(s)	23, 79, 796
Hpy188I	TCNGA	7 cut(s)	242, 341, 410, 624, 723, 742, 898
Hpy188III	TCNNGA	1 cut(s)	674
Hpy8I	GTNNAC	3 cut(s)	23, 79, 796
Hpy99I	CGWCG	1 cut(s)	788
HpyAV	CCTTC	3 cut(s)	79, 247, 629
HpyCH4III	ACNGT	4 cut(s)	20, 165, 395, 561
HpyCH4IV	ACGT	4 cut(s)	420, 783, 792, 819
HpyCH4V	TGCA	6 cut(s)	41, 287, 377, 579, 872, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	4 cut(s)	82, 129, 722, 762
HpySE526I	ACGT	4 cut(s)	420, 783, 792, 819
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	6 cut(s)	76, 199, 274, 771, 839, 909
HspAI	GCGC	2 cut(s)	449, 467
Kzo9I	GATC	5 cut(s)	122, 354, 414, 474, 670
Lsp1109I	GCAGC	2 cut(s)	433, 615
LweI	GCATC	5 cut(s)	57, 615, 748, 859, 881
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	4 cut(s)	420, 783, 792, 819
MaeIII	GTNAC	1 cut(s)	318
MalI	GATC	5 cut(s)	124, 356, 416, 476, 672
MboI	GATC	5 cut(s)	122, 354, 414, 474, 670
MboII	GAAGA	4 cut(s)	337, 511, 691, 800
MhlI	GDGCHC	2 cut(s)	400, 728
MluCI	AATT	3 cut(s)	63, 305, 494
MlyI	GAGTC	2 cut(s)	250, 336
MnlI	CCTC	2 cut(s)	124, 575
Mph1103I	ATGCAT	2 cut(s)	379, 874
MseI	TTAA	1 cut(s)	530
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	5 cut(s)	106, 401, 659, 689, 752
MspR9I	CCNGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	5 cut(s)	122, 354, 414, 474, 670
NlaIII	CATG	6 cut(s)	76, 199, 274, 771, 839, 909
NlaIV	GGNNCC	2 cut(s)	147, 693
NsiI	ATGCAT	2 cut(s)	379, 874
PaqCI	CACCTGC	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	2 cut(s)	738, 789
PfeI	GAWTC	1 cut(s)	718
PflMI	CCANNNNNTGG	2 cut(s)	180, 773
PkrI	GCNGC	2 cut(s)	448, 630
PleI	GAGTC	2 cut(s)	250, 336
PpsI	GAGTC	2 cut(s)	250, 336
Psp1406I	AACGTT	1 cut(s)	420
PspN4I	GGNNCC	2 cut(s)	147, 693
PstNI	CAGNNNCTG	1 cut(s)	628
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	1 cut(s)	530
SatI	GCNGC	2 cut(s)	447, 629
Sau3AI	GATC	5 cut(s)	122, 354, 414, 474, 670
SchI	GAGTC	2 cut(s)	250, 336
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	2 cut(s)	400, 728
SfaNI	GCATC	5 cut(s)	57, 615, 748, 859, 881
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	454, 566
SmoI	CTYRAG	2 cut(s)	454, 566
Sse9I	AATT	3 cut(s)	63, 305, 494
SsiI	CCGC	2 cut(s)	478, 652
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	29, 52
TaaI	ACNGT	4 cut(s)	20, 165, 395, 561
TaiI	ACGT	4 cut(s)	423, 786, 795, 822
TaqI	TCGA	2 cut(s)	125, 786
TasI	AATT	3 cut(s)	63, 305, 494
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	718
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TscAI	CASTG	3 cut(s)	96, 168, 918
TseI	GCWGC	2 cut(s)	446, 628
TspDTI	ATGAA	7 cut(s)	61, 347, 371, 737, 822, 846, 915
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	3 cut(s)	96, 168, 918
Van91I	CCANNNNNTGG	2 cut(s)	180, 773
XapI	RAATTY	2 cut(s)	305, 494
XmaJI	CCTAGG	1 cut(s)	52
XspI	CTAG	1 cut(s)	53
ZraI	GACGTC	1 cut(s)	784
Zsp2I	ATGCAT	2 cut(s)	379, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.