Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

23820922 .. 23822544

Gene Structure 1623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG110000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGGCGCAGTAGCGGACAGTCAACATCCTTGGGCATTTGCATTTGGCATTCTAGGTAATCTAATTTCAATCATGGTTTACTTGGCCCCAGTGCCAACATTTTACCGGATTTACATAGGGAAATCGACTGAAAGTTTCCAATCGGTGCCATATCTGGTAGAACTGTTTAGTTCCACGCTTTGGGTCTACTATGCCATACTGAAGCAAAATGCTGTGCTATTCATCACAATTAACACCTTCGGAAGTGTGATGGAGACTTTGTACATCGCCATGTACATTGTTTATGCAACAAACGCTTCAAGGAAATTCACTATCAAGTTATTCGGGTTTATGAACTTGGGACTCTTTTCCTTGATCATTGTCCTTTTACACTGTATTTCATACTCAATACCGTGTCCCGGTTCTCGGATGGATCAACATTGCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

142

Amino Acids

16.04

Weight (kDa)

8.45

Isoelectric Point (pI)

34.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	14 - 98	6.2e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	305
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	2 cut(s)	263, 275
AfiI	CCNNNNNNNGG	3 cut(s)	180, 398, 405
AgsI	TTSAA	2 cut(s)	69, 300
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	420
AoxI	GGCC	1 cut(s)	84
ApoI	RAATTY	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	145
BccI	CCATC	2 cut(s)	244, 403
BclI	TGATCA	1 cut(s)	354
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	53
Bme1390I	CCNGG	1 cut(s)	399
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	87, 147
BmrFI	CCNGG	1 cut(s)	399
BmrI	ACTGGG	1 cut(s)	83
BmuI	ACTGGG	1 cut(s)	83
BpuMI	CCSGG	1 cut(s)	399
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	3 cut(s)	180, 398, 405
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	2 cut(s)	25, 414
BseLI	CCNNNNNNNGG	3 cut(s)	180, 398, 405
BseMI	GCAATG	1 cut(s)	418
BseNI	ACTGG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	106, 399
BslFI	GGGAC	2 cut(s)	354, 381
BslI	CCNNNNNNNGG	3 cut(s)	180, 398, 405
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	2 cut(s)	354, 381
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	86
Bsp1407I	TGTACA	2 cut(s)	261, 273
Bsp143I	GATC	2 cut(s)	354, 412
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	1 cut(s)	86
BspLI	GGNNCC	2 cut(s)	87, 147
BspPI	GGATC	1 cut(s)	420
BspT107I	GGYRCC	1 cut(s)	145
BsrDI	GCAATG	1 cut(s)	418
BsrGI	TGTACA	2 cut(s)	261, 273
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	2 cut(s)	354, 412
BssT1I	CCWWGG	1 cut(s)	29
Bst4CI	ACNGT	4 cut(s)	20, 165, 374, 393
BstAUI	TGTACA	2 cut(s)	261, 273
BstF5I	GGATG	2 cut(s)	25, 414
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	2 cut(s)	357, 415
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	2 cut(s)	354, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	86
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	25, 414
BtsIMutI	CAGTG	2 cut(s)	96, 370
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	262, 274
CviAII	CATG	2 cut(s)	73, 271
CviJI	RGCY	1 cut(s)	86
CviKI_1	RGCY	1 cut(s)	86
CviQI	GTAC	2 cut(s)	262, 274
DpnI	GATC	2 cut(s)	356, 414
DpnII	GATC	2 cut(s)	354, 412
Eco130I	CCWWGG	1 cut(s)	29
Eco57I	CTGAAG	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	2 cut(s)	76, 274
FaiI	YATR	9 cut(s)	74, 116, 151, 192, 197, 272, 285, 332, 382
FaqI	GGGAC	2 cut(s)	354, 381
FatI	CATG	2 cut(s)	72, 270
FbaI	TGATCA	1 cut(s)	354
FblI	GTMKAC	1 cut(s)	186
FokI	GGATG	2 cut(s)	12, 421
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	7
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	2 cut(s)	106, 399
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	76, 274
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HinfI	GANTC	1 cut(s)	342
HpaII	CCGG	2 cut(s)	106, 399
Hpy166II	GTNNAC	3 cut(s)	23, 79, 187
Hpy188I	TCNGA	2 cut(s)	242, 408
Hpy8I	GTNNAC	3 cut(s)	23, 79, 187
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	4 cut(s)	20, 165, 374, 393
HpyCH4V	TGCA	2 cut(s)	41, 287
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
Hsp92II	CATG	2 cut(s)	76, 274
HspAI	GCGC	1 cut(s)	6
Ksp22I	TGATCA	1 cut(s)	354
Kzo9I	GATC	2 cut(s)	354, 412
LpnPI	CCDG	4 cut(s)	102, 119, 140, 412
MaeI	CTAG	1 cut(s)	53
MalI	GATC	2 cut(s)	356, 414
MboI	GATC	2 cut(s)	354, 412
MluCI	AATT	3 cut(s)	63, 228, 305
MlyI	GAGTC	1 cut(s)	336
MseI	TTAA	2 cut(s)	231, 427
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	2 cut(s)	106, 399
MspR9I	CCNGG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	354, 412
NlaIII	CATG	2 cut(s)	76, 274
NlaIV	GGNNCC	2 cut(s)	87, 147
PctI	GAATGC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	180
PleI	GAGTC	1 cut(s)	336
PpsI	GAGTC	1 cut(s)	336
PspN4I	GGNNCC	2 cut(s)	87, 147
PspPI	GGNCC	1 cut(s)	85
RsaI	GTAC	2 cut(s)	263, 275
RsaNI	GTAC	2 cut(s)	262, 274
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	2 cut(s)	231, 427
Sau3AI	GATC	2 cut(s)	354, 412
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	1 cut(s)	399
SetI	ASST	2 cut(s)	58, 239
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	63, 228, 305
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	397
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	4 cut(s)	20, 165, 374, 393
TaqI	TCGA	1 cut(s)	125
TasI	AATT	3 cut(s)	63, 228, 305
TatI	WGTACW	2 cut(s)	261, 273
Tru1I	TTAA	2 cut(s)	231, 427
Tru9I	TTAA	2 cut(s)	231, 427
TscAI	CASTG	2 cut(s)	96, 377
TspDTI	ATGAA	3 cut(s)	211, 347, 369
TspRI	CASTG	2 cut(s)	96, 377
Van91I	CCANNNNNTGG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	305
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.