Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

52827812 .. 52830115

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00371200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCTGAAGCAAAATGCTGTGCTTCTCATCACAATCAACACCTTCGGAAGTGTAATAGAGACTCTGTACATCGCCATGTATATTGTTTATGCAACAAAGGCTTCAAGGAAATTCACTATCAAGTTACTAGGGTTTATGAACTTCGGACTCTTCTCCTTGATCCTTGTCGTTTTACACTATGCATTTCATAGTCAATACCGTGCCCCGGTTCTCGGATGGATCAACGTTGCCATTTCCATTTGTGTTTTTGCAGCGCCCTTGAGTATTGTGGCGCAGGTGATCCGCACAAAAAGTGTTGAATTTATGCCATTCAGCTTATCATTCTTCCTTACTTTGAGTGCCGTGATGTGGTTTGCCTATGGACTGTTCCTCAAGGACATTTGCATAGCACTTCCAAACGTGTTAGGTTTTGTCTTGGGTCTCCTTCAGATGCTGCTCTACGGCATATACAGAAACCGCAAGCAGGTCATAGATGATCCGGAGAAGAAGCTTCCGGCATCGGAGCATGTGAAAAACATAGTGATTCTAAGCACTATCGCAACATCCGAAGTTCATCCGGTGGATGCTAAGCCGTGCGATGGCAATGACGTCGAAGACGTGAACGGCAAAGATGAAAATAAGGATGTTGATGGTGATGAACATGAGAAGTGCGTGGTGGTGGTGGTGGATGTGGATGCATCGGGTGAGCTTCAACTGAAATCTGAAGAACCATGTGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

240

Amino Acids

26.65

Weight (kDa)

5.53

Isoelectric Point (pI)

29.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	70 - 154	2.4e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
AatII	GACGTC	1 cut(s)	591
Acc36I	ACCTGC	2 cut(s)	265, 454
AccIII	TCCGGA	1 cut(s)	478
AciI	CCGC	2 cut(s)	283, 457
AclI	AACGTT	1 cut(s)	225
AclWI	GGATC	4 cut(s)	154, 227, 274, 470
AcsI	RAATTY	2 cut(s)	110, 299
AcuI	CTGAAG	3 cut(s)	26, 410, 723
AcyI	GRCGYC	1 cut(s)	588
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	5 cut(s)	205, 212, 348, 463, 578
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	3 cut(s)	105, 299, 692
AjiI	CACGTC	1 cut(s)	598
AluBI	AGCT	3 cut(s)	315, 490, 688
AluI	AGCT	3 cut(s)	315, 490, 688
Alw26I	GTCTC	2 cut(s)	53, 425
AlwI	GGATC	4 cut(s)	154, 227, 274, 470
AlwNI	CAGNNNCTG	1 cut(s)	433
Aor13HI	TCCGGA	1 cut(s)	478
ApeKI	GCWGC	2 cut(s)	251, 433
ApoI	RAATTY	2 cut(s)	110, 299
AspLEI	GCGC	2 cut(s)	256, 274
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	3 cut(s)	289, 644, 695
BaeGI	GKGCMC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	600
BbvI	GCAGC	2 cut(s)	263, 420
BccI	CCATC	3 cut(s)	210, 572, 623
BceAI	ACGGC	4 cut(s)	326, 457, 556, 619
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	2 cut(s)	53, 425
BfaI	CTAG	1 cut(s)	128
BfoI	RGCGCY	1 cut(s)	257
BfuAI	ACCTGC	2 cut(s)	265, 454
BisI	GCNGC	2 cut(s)	252, 434
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	2 cut(s)	253, 435
Bme1390I	CCNGG	1 cut(s)	206
BmgBI	CACGTC	1 cut(s)	598
BmrFI	CCNGG	1 cut(s)	206
BmsI	GCATC	5 cut(s)	420, 506, 553, 664, 686
BpiI	GAAGAC	1 cut(s)	600
Bpu1102I	GCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	2 cut(s)	280, 356
BpuMI	CCSGG	1 cut(s)	206
BsaHI	GRCGYC	1 cut(s)	588
BsaI	GGTCTC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	2 cut(s)	478, 556
Bsc4I	CCNNNNNNNGG	5 cut(s)	205, 212, 348, 463, 578
Bse3DI	GCAATG	1 cut(s)	589
BseAI	TCCGGA	1 cut(s)	478
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	7 cut(s)	221, 542, 553, 568, 628, 673, 679
BseLI	CCNNNNNNNGG	5 cut(s)	205, 212, 348, 463, 578
BseMI	GCAATG	1 cut(s)	589
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	263, 420
BsiSI	CCGG	4 cut(s)	206, 479, 494, 557
BslI	CCNNNNNNNGG	5 cut(s)	205, 212, 348, 463, 578
BsmAI	GTCTC	2 cut(s)	53, 425
Bso31I	GGTCTC	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp13I	TCCGGA	1 cut(s)	478
Bsp1407I	TGTACA	1 cut(s)	66
Bsp143I	GATC	4 cut(s)	159, 219, 279, 475
Bsp1720I	GCTNAGC	1 cut(s)	567
BspACI	CCGC	2 cut(s)	283, 457
BspEI	TCCGGA	1 cut(s)	478
BspMI	ACCTGC	2 cut(s)	265, 454
BspPI	GGATC	4 cut(s)	154, 227, 274, 470
BspTNI	GGTCTC	1 cut(s)	425
BsrDI	GCAATG	1 cut(s)	589
BsrGI	TGTACA	1 cut(s)	66
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	4 cut(s)	159, 219, 279, 475
BssNI	GRCGYC	1 cut(s)	588
Bst4CI	ACNGT	2 cut(s)	200, 366
Bst6I	CTCTTC	1 cut(s)	155
BstACI	GRCGYC	1 cut(s)	588
BstAUI	TGTACA	1 cut(s)	66
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	2 cut(s)	527, 567
BstF5I	GGATG	7 cut(s)	221, 542, 553, 568, 628, 673, 679
BstH2I	RGCGCY	1 cut(s)	257
BstHHI	GCGC	2 cut(s)	256, 274
BstKTI	GATC	4 cut(s)	162, 222, 282, 478
BstMAI	GTCTC	2 cut(s)	53, 425
BstMBI	GATC	4 cut(s)	159, 219, 279, 475
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	204
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	263, 420
BstV2I	GAAGAC	1 cut(s)	600
BtgZI	GCGATG	2 cut(s)	55, 591
BtrI	CACGTC	1 cut(s)	598
BtsCI	GGATG	7 cut(s)	221, 542, 553, 568, 628, 673, 679
BtsI	GCAGTG	1 cut(s)	723
BtsIMutI	CAGTG	1 cut(s)	723
BveI	ACCTGC	2 cut(s)	265, 454
Cac8I	GCNNGC	1 cut(s)	461
CaiI	CAGNNNCTG	1 cut(s)	433
CfoI	GCGC	2 cut(s)	256, 274
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	4 cut(s)	76, 506, 641, 711
CviJI	RGCY	5 cut(s)	101, 315, 490, 571, 688
CviKI_1	RGCY	5 cut(s)	101, 315, 490, 571, 688
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	527, 567
DpnI	GATC	4 cut(s)	161, 221, 281, 477
DpnII	GATC	4 cut(s)	159, 219, 279, 475
Eam1104I	CTCTTC	1 cut(s)	155
EarI	CTCTTC	1 cut(s)	155
Eco31I	GGTCTC	1 cut(s)	425
Eco57I	CTGAAG	3 cut(s)	26, 410, 723
EcoT22I	ATGCAT	2 cut(s)	184, 679
FaeI	CATG	4 cut(s)	79, 509, 644, 714
FatI	CATG	4 cut(s)	75, 505, 640, 710
Fnu4HI	GCNGC	2 cut(s)	252, 434
FokI	GGATG	7 cut(s)	228, 529, 540, 575, 635, 680, 686
Fsp4HI	GCNGC	2 cut(s)	252, 434
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	2 cut(s)	255, 273
GluI	GCNGC	2 cut(s)	252, 434
HaeII	RGCGCY	1 cut(s)	257
HapII	CCGG	4 cut(s)	206, 479, 494, 557
HhaI	GCGC	2 cut(s)	256, 274
Hin1I	GRCGYC	1 cut(s)	588
Hin1II	CATG	4 cut(s)	79, 509, 644, 714
Hin6I	GCGC	2 cut(s)	254, 272
HinP1I	GCGC	2 cut(s)	254, 272
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	3 cut(s)	61, 147, 523
HpaII	CCGG	4 cut(s)	206, 479, 494, 557
HphI	GGTGA	3 cut(s)	289, 644, 695
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	7 cut(s)	47, 146, 215, 429, 502, 547, 703
Hpy188III	TCNNGA	1 cut(s)	479
Hpy8I	GTNNAC	1 cut(s)	601
Hpy99I	CGWCG	1 cut(s)	593
HpyAV	CCTTC	2 cut(s)	52, 434
HpyCH4III	ACNGT	2 cut(s)	200, 366
HpyCH4IV	ACGT	4 cut(s)	225, 399, 588, 597
HpyCH4V	TGCA	6 cut(s)	92, 182, 251, 384, 677, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	2 cut(s)	527, 567
HpySE526I	ACGT	4 cut(s)	225, 399, 588, 597
Hsp92I	GRCGYC	1 cut(s)	588
Hsp92II	CATG	4 cut(s)	79, 509, 644, 714
HspAI	GCGC	2 cut(s)	254, 272
Kpn2I	TCCGGA	1 cut(s)	478
Kzo9I	GATC	4 cut(s)	159, 219, 279, 475
LmnI	GCTCC	1 cut(s)	502
LpnPI	CCDG	6 cut(s)	219, 260, 449, 492, 507, 570
Lsp1109I	GCAGC	2 cut(s)	263, 420
LweI	GCATC	5 cut(s)	420, 506, 553, 664, 686
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	4 cut(s)	225, 399, 588, 597
MaeIII	GTNAC	1 cut(s)	123
MalI	GATC	4 cut(s)	161, 221, 281, 477
MboI	GATC	4 cut(s)	159, 219, 279, 475
MboII	GAAGA	5 cut(s)	142, 316, 496, 605, 716
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	2 cut(s)	110, 299
MlyI	GAGTC	2 cut(s)	55, 141
MnlI	CCTC	1 cut(s)	380
Mph1103I	ATGCAT	2 cut(s)	184, 679
MroI	TCCGGA	1 cut(s)	478
MslI	CAYNNNNRTG	1 cut(s)	74
MspI	CCGG	4 cut(s)	206, 479, 494, 557
MspR9I	CCNGG	1 cut(s)	206
MwoI	GCNNNNNNNGC	1 cut(s)	98
NciI	CCSGG	1 cut(s)	206
NdeII	GATC	4 cut(s)	159, 219, 279, 475
NlaIII	CATG	4 cut(s)	79, 509, 644, 714
NsiI	ATGCAT	2 cut(s)	184, 679
NspI	RCATGY	1 cut(s)	509
PaqCI	CACCTGC	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	2 cut(s)	543, 594
PfeI	GAWTC	1 cut(s)	523
PkrI	GCNGC	2 cut(s)	253, 435
PleI	GAGTC	2 cut(s)	55, 141
PpsI	GAGTC	2 cut(s)	55, 141
Psp1406I	AACGTT	1 cut(s)	225
PstNI	CAGNNNCTG	1 cut(s)	433
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	74
SatI	GCNGC	2 cut(s)	252, 434
Sau3AI	GATC	4 cut(s)	159, 219, 279, 475
SchI	GAGTC	2 cut(s)	55, 141
ScrFI	CCNGG	1 cut(s)	206
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	5 cut(s)	420, 506, 553, 664, 686
SmiMI	CAYNNNNRTG	1 cut(s)	74
SmlI	CTYRAG	2 cut(s)	259, 371
SmoI	CTYRAG	2 cut(s)	259, 371
Sse9I	AATT	2 cut(s)	110, 299
SsiI	CCGC	2 cut(s)	283, 457
SspMI	CTAG	1 cut(s)	128
StyD4I	CCNGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	200, 366
TaiI	ACGT	4 cut(s)	228, 402, 591, 600
TaqI	TCGA	1 cut(s)	591
TasI	AATT	2 cut(s)	110, 299
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	523
TscAI	CASTG	1 cut(s)	723
TseI	GCWGC	2 cut(s)	251, 433
TspDTI	ATGAA	5 cut(s)	152, 176, 542, 627, 651
TspRI	CASTG	1 cut(s)	723
XapI	RAATTY	2 cut(s)	110, 299
XceI	RCATGY	1 cut(s)	509
XspI	CTAG	1 cut(s)	128
ZraI	GACGTC	1 cut(s)	589
Zsp2I	ATGCAT	2 cut(s)	184, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.