Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

60590678 .. 60593135

Gene Structure 2458 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG292200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGAGTTCCTTGATTTCTAATACAGTTTCGTTTTGCATGGCAGGTAATCTAATTTCCTTCATGGTTTACTTAGCCCCAGTGCCAACGTTTTACCGGATTTACAGAAAGAGATCGACTGAGGGTTTCCAATCGGTGCCGTATCTGGTAGCACTGTTTAGTGCCACGCTTTGGCTCTACTATGCCATGCTGAAGCAAAATGCTGTGCTTCTCATCACAATCAACACCTTCGGAAGTGTAATAGAGACTCTGTACATCGCCATGTATATTGTTTATGCAACAAAGGCTTCAAGGAAATTCACTATCAAGTTACTAGGGTTTATGAACTTCGGACTCTTCTCCTTGATCCTTGTCGTTTTACACTATGCATTTCATAGTCAATACCGTGCCCCGGTTCTCGGATGGATCAACGTTGCCATTTCCGTTTGTGTTTTTGCAGCGCCCTTGAGTATTGTGGCGCAGGTGATCCGCACAAAAAGTGTTGAATTTATGCCATTCAGCTTATCATTCTTCCTTACTTTGAGTGCCGTGATGTGGTTTGCCTATGGACTGTTCCTCAAGGACATTTGCATAGCACTTCCAAACGTGTTAGGTTTTGTCTTGGGTCTCCTTCAGATGCTGCTCTACGCCATATACAGAAACCGCAAGCAGGTCATAGTTGATCCGGAGAAGAAGCTTCCGGCATCGGAGCATGTGAAAAACATAGTGATTCTGAGCACTATCGCAACATCCGAAGTTCATCCGGTGGATGCTAAGCCGTGCGATGGCAATGACGTCGAAGACGTGGACGGCAAAGATGAAAATAAGGATGTTGATGGTGATGAACATGAGAAGTGTGTGGTGGTGGTGGTGGATGTGGATGCATCGGGTGAGCTTCAACTGAAATCTGAAGAACCATGTGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

301

Amino Acids

33.61

Weight (kDa)

6.21

Isoelectric Point (pI)

38.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 94	2.9e-24	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	131 - 215	1.8e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	448
AatII	GACGTC	1 cut(s)	774
Acc36I	ACCTGC	3 cut(s)	32, 448, 637
AccB1I	GGYRCC	1 cut(s)	133
AccB7I	CCANNNNNTGG	1 cut(s)	168
AccIII	TCCGGA	1 cut(s)	661
AciI	CCGC	2 cut(s)	466, 640
AclI	AACGTT	2 cut(s)	86, 408
AclWI	GGATC	4 cut(s)	337, 410, 457, 653
AcsI	RAATTY	2 cut(s)	293, 482
AcuI	CTGAAG	3 cut(s)	209, 593, 906
AcyI	GRCGYC	1 cut(s)	771
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	6 cut(s)	168, 388, 395, 531, 646, 761
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	3 cut(s)	288, 482, 875
AjiI	CACGTC	1 cut(s)	781
AluBI	AGCT	3 cut(s)	498, 673, 871
AluI	AGCT	3 cut(s)	498, 673, 871
Alw21I	GWGCWC	1 cut(s)	716
Alw26I	GTCTC	2 cut(s)	236, 608
AlwI	GGATC	4 cut(s)	337, 410, 457, 653
AlwNI	CAGNNNCTG	1 cut(s)	616
Aor13HI	TCCGGA	1 cut(s)	661
ApeKI	GCWGC	2 cut(s)	434, 616
ApoI	RAATTY	2 cut(s)	293, 482
AspLEI	GCGC	2 cut(s)	439, 457
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	472, 827, 878
BaeGI	GKGCMC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	783
Bbv12I	GWGCWC	1 cut(s)	716
BbvI	GCAGC	2 cut(s)	446, 603
BccI	CCATC	3 cut(s)	393, 755, 806
BceAI	ACGGC	4 cut(s)	121, 509, 739, 802
BcgI	CGANNNNNNTGC	2 cut(s)	754, 788
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	2 cut(s)	236, 608
BfaI	CTAG	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	440
BfuAI	ACCTGC	3 cut(s)	32, 448, 637
BisI	GCNGC	2 cut(s)	435, 617
BlpI	GCTNAGC	1 cut(s)	750
BlsI	GCNGC	2 cut(s)	436, 618
Bme1390I	CCNGG	1 cut(s)	389
BmgBI	CACGTC	1 cut(s)	781
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	5 cut(s)	603, 689, 736, 847, 869
BmuI	ACTGGG	1 cut(s)	71
BpiI	GAAGAC	1 cut(s)	783
Bpu1102I	GCTNAGC	1 cut(s)	750
BpuEI	CTTGAG	2 cut(s)	463, 539
BpuMI	CCSGG	1 cut(s)	389
BsaHI	GRCGYC	1 cut(s)	771
BsaI	GGTCTC	1 cut(s)	608
BsaJI	CCNNGG	1 cut(s)	387
BsaWI	WCCGGW	3 cut(s)	93, 661, 739
Bsc4I	CCNNNNNNNGG	6 cut(s)	168, 388, 395, 531, 646, 761
Bse1I	ACTGG	1 cut(s)	77
Bse3DI	GCAATG	1 cut(s)	772
BseAI	TCCGGA	1 cut(s)	661
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	7 cut(s)	404, 725, 736, 751, 811, 856, 862
BseLI	CCNNNNNNNGG	6 cut(s)	168, 388, 395, 531, 646, 761
BseMI	GCAATG	1 cut(s)	772
BseMII	CTCAG	2 cut(s)	108, 701
BseNI	ACTGG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	446, 603
BshNI	GGYRCC	1 cut(s)	133
BsiHKAI	GWGCWC	1 cut(s)	716
BsiSI	CCGG	5 cut(s)	94, 389, 662, 677, 740
BslI	CCNNNNNNNGG	6 cut(s)	168, 388, 395, 531, 646, 761
BsmAI	GTCTC	2 cut(s)	236, 608
Bso31I	GGTCTC	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	388, 716
Bsp13I	TCCGGA	1 cut(s)	661
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	5 cut(s)	110, 342, 402, 462, 658
Bsp1720I	GCTNAGC	1 cut(s)	750
BspACI	CCGC	2 cut(s)	466, 640
BspCNI	CTCAG	2 cut(s)	109, 702
BspEI	TCCGGA	1 cut(s)	661
BspLI	GGNNCC	1 cut(s)	135
BspMI	ACCTGC	3 cut(s)	32, 448, 637
BspPI	GGATC	4 cut(s)	337, 410, 457, 653
BspT107I	GGYRCC	1 cut(s)	133
BspTNI	GGTCTC	1 cut(s)	608
BsrDI	GCAATG	1 cut(s)	772
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	5 cut(s)	110, 342, 402, 462, 658
BssNI	GRCGYC	1 cut(s)	771
Bst4CI	ACNGT	4 cut(s)	25, 153, 383, 549
Bst6I	CTCTTC	1 cut(s)	338
BstACI	GRCGYC	1 cut(s)	771
BstAUI	TGTACA	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	644
BstDEI	CTNAG	4 cut(s)	70, 117, 710, 750
BstF5I	GGATG	7 cut(s)	404, 725, 736, 751, 811, 856, 862
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	2 cut(s)	439, 457
BstKTI	GATC	5 cut(s)	113, 345, 405, 465, 661
BstMAI	GTCTC	2 cut(s)	236, 608
BstMBI	GATC	5 cut(s)	110, 342, 402, 462, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstNSI	RCATGY	1 cut(s)	692
BstSCI	CCNGG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	388
BstV1I	GCAGC	2 cut(s)	446, 603
BstV2I	GAAGAC	1 cut(s)	783
BtgZI	GCGATG	2 cut(s)	238, 774
BtrI	CACGTC	1 cut(s)	781
BtsCI	GGATG	7 cut(s)	404, 725, 736, 751, 811, 856, 862
BtsI	GCAGTG	1 cut(s)	906
BtsIMutI	CAGTG	3 cut(s)	84, 149, 906
BveI	ACCTGC	3 cut(s)	32, 448, 637
Cac8I	GCNNGC	1 cut(s)	644
CaiI	CAGNNNCTG	1 cut(s)	616
CfoI	GCGC	2 cut(s)	439, 457
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	7 cut(s)	37, 61, 184, 259, 689, 824, 894
CviJI	RGCY	7 cut(s)	74, 172, 284, 498, 673, 754, 871
CviKI_1	RGCY	7 cut(s)	74, 172, 284, 498, 673, 754, 871
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	4 cut(s)	70, 117, 710, 750
DpnI	GATC	5 cut(s)	112, 344, 404, 464, 660
DpnII	GATC	5 cut(s)	110, 342, 402, 462, 658
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco31I	GGTCTC	1 cut(s)	608
Eco57I	CTGAAG	3 cut(s)	209, 593, 906
EcoT22I	ATGCAT	2 cut(s)	367, 862
FaeI	CATG	7 cut(s)	40, 64, 187, 262, 692, 827, 897
FatI	CATG	7 cut(s)	36, 60, 183, 258, 688, 823, 893
Fnu4HI	GCNGC	2 cut(s)	435, 617
FokI	GGATG	7 cut(s)	411, 712, 723, 758, 818, 863, 869
Fsp4HI	GCNGC	2 cut(s)	435, 617
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	2 cut(s)	438, 456
GluI	GCNGC	2 cut(s)	435, 617
HaeII	RGCGCY	1 cut(s)	440
HapII	CCGG	5 cut(s)	94, 389, 662, 677, 740
HhaI	GCGC	2 cut(s)	439, 457
Hin1I	GRCGYC	1 cut(s)	771
Hin1II	CATG	7 cut(s)	40, 64, 187, 262, 692, 827, 897
Hin6I	GCGC	2 cut(s)	437, 455
HinP1I	GCGC	2 cut(s)	437, 455
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	3 cut(s)	244, 330, 706
HpaII	CCGG	5 cut(s)	94, 389, 662, 677, 740
HphI	GGTGA	3 cut(s)	472, 827, 878
Hpy166II	GTNNAC	2 cut(s)	67, 784
Hpy188I	TCNGA	8 cut(s)	230, 329, 398, 612, 685, 711, 730, 886
Hpy188III	TCNNGA	1 cut(s)	662
Hpy8I	GTNNAC	2 cut(s)	67, 784
Hpy99I	CGWCG	1 cut(s)	776
HpyAV	CCTTC	3 cut(s)	67, 235, 617
HpyCH4III	ACNGT	4 cut(s)	25, 153, 383, 549
HpyCH4IV	ACGT	5 cut(s)	86, 408, 582, 771, 780
HpyCH4V	TGCA	7 cut(s)	36, 275, 365, 434, 567, 860, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	4 cut(s)	70, 117, 710, 750
HpySE526I	ACGT	5 cut(s)	86, 408, 582, 771, 780
Hsp92I	GRCGYC	1 cut(s)	771
Hsp92II	CATG	7 cut(s)	40, 64, 187, 262, 692, 827, 897
HspAI	GCGC	2 cut(s)	437, 455
Kpn2I	TCCGGA	1 cut(s)	661
Kzo9I	GATC	5 cut(s)	110, 342, 402, 462, 658
LmnI	GCTCC	1 cut(s)	685
Lsp1109I	GCAGC	2 cut(s)	446, 603
LweI	GCATC	5 cut(s)	603, 689, 736, 847, 869
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	5 cut(s)	86, 408, 582, 771, 780
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	5 cut(s)	112, 344, 404, 464, 660
MboI	GATC	5 cut(s)	110, 342, 402, 462, 658
MboII	GAAGA	5 cut(s)	325, 499, 679, 788, 899
MhlI	GDGCHC	2 cut(s)	388, 716
MluCI	AATT	3 cut(s)	51, 293, 482
MlyI	GAGTC	2 cut(s)	238, 324
MnlI	CCTC	2 cut(s)	112, 563
Mph1103I	ATGCAT	2 cut(s)	367, 862
MroI	TCCGGA	1 cut(s)	661
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	5 cut(s)	94, 389, 662, 677, 740
MspR9I	CCNGG	1 cut(s)	389
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	5 cut(s)	110, 342, 402, 462, 658
NlaIII	CATG	7 cut(s)	40, 64, 187, 262, 692, 827, 897
NlaIV	GGNNCC	1 cut(s)	135
NsiI	ATGCAT	2 cut(s)	367, 862
NspI	RCATGY	1 cut(s)	692
PaqCI	CACCTGC	1 cut(s)	448
PcsI	WCGNNNNNNNCGW	2 cut(s)	726, 777
PfeI	GAWTC	1 cut(s)	706
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	2 cut(s)	436, 618
PleI	GAGTC	2 cut(s)	238, 324
PpsI	GAGTC	2 cut(s)	238, 324
Psp1406I	AACGTT	2 cut(s)	86, 408
PspN4I	GGNNCC	1 cut(s)	135
PstNI	CAGNNNCTG	1 cut(s)	616
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	257
SatI	GCNGC	2 cut(s)	435, 617
Sau3AI	GATC	5 cut(s)	110, 342, 402, 462, 658
SchI	GAGTC	2 cut(s)	238, 324
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	2 cut(s)	388, 716
SfaNI	GCATC	5 cut(s)	603, 689, 736, 847, 869
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	442, 554
SmoI	CTYRAG	2 cut(s)	442, 554
Sse9I	AATT	3 cut(s)	51, 293, 482
SsiI	CCGC	2 cut(s)	466, 640
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	387
TaaI	ACNGT	4 cut(s)	25, 153, 383, 549
TaiI	ACGT	5 cut(s)	89, 411, 585, 774, 783
TaqI	TCGA	2 cut(s)	113, 774
TasI	AATT	3 cut(s)	51, 293, 482
TatI	WGTACW	1 cut(s)	249
TfiI	GAWTC	1 cut(s)	706
TscAI	CASTG	3 cut(s)	84, 156, 906
TseI	GCWGC	2 cut(s)	434, 616
TspDTI	ATGAA	6 cut(s)	49, 335, 359, 725, 810, 834
TspGWI	ACGGA	1 cut(s)	409
TspRI	CASTG	3 cut(s)	84, 156, 906
Van91I	CCANNNNNTGG	1 cut(s)	168
XapI	RAATTY	2 cut(s)	293, 482
XceI	RCATGY	1 cut(s)	692
XspI	CTAG	1 cut(s)	311
ZraI	GACGTC	1 cut(s)	772
Zsp2I	ATGCAT	2 cut(s)	367, 862

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.