Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

19863118 .. 19864479

Gene Structure 1362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G008920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGGCGCATTAGCGGACAGTCAACATCCTTGGGCATTTGCATTTGGCATTCTAGGCAAAGATCTAATATTAATCTACCATGTCATACTGAAGCAAAATGCTGTGCTATTCATCACAATTAACACCTTCGGAAGTGTGATGTTGACCTTCGGAAATTTTGTCCTTATTTCCATCTTTGCCGCCTTCGACATCATTGCCATCGCACAGCTTAGCATCCATCGAATGAACTTCGGATGTTGTGATAGTGCTCAGAATCACAGCGTTTGTCACGTGGCACAGGTGATCCGCACAAAAACCGTTGAATTTATGCTGTTCAGCTTATCATTCTTCCTTACATTAAGTGGTGTGTTGTGGTTTGCGTATGGACTCGTCGTCAAGGACATATTCATAGCAATTTCATATGGGTTAGGTTTTGTCTTGGGTCTCCTTAAGATGTTGTTCTACGCCATATACAAAAACCGCAATGAGGTCATAGTTGATAAGGAGAAGAAGCCTCCAGGACCAGACCACGTAACAAATGCTGTGATTCTGAGCACTATCGCAACATCCAAAGTTCATTCGGTGGATGCTAAGCCGTGCGATGACAATGATGTCGAAGGTGGCAAAGATGGAAATAAGGACAGTGATAGCAATGAACATAAGTGTATGGAGTTGGTGGTGAATATGGATGCTTCGGGTGACGTTCAACTGAAATCTGATGAACCATGTGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

238

Amino Acids

26.11

Weight (kDa)

5.69

Isoelectric Point (pI)

22.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	90 - 155	3.6e-15	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	590
AciI	CCGC	4 cut(s)	14, 180, 286, 460
AclWI	GGATC	1 cut(s)	277
AcsI	RAATTY	2 cut(s)	154, 302
AcuI	CTGAAG	1 cut(s)	110
AcvI	CACGTG	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	466
AflII	CTTAAG	1 cut(s)	428
AgsI	TTSAA	2 cut(s)	302, 686
AhdI	GACNNNNNGTC	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	496
AluBI	AGCT	2 cut(s)	208, 318
AluI	AGCT	2 cut(s)	208, 318
Alw21I	GWGCWC	2 cut(s)	250, 536
Alw26I	GTCTC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	277
ApoI	RAATTY	2 cut(s)	154, 302
AseI	ATTAAT	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	500
AsuHPI	GGTGA	3 cut(s)	292, 670, 689
AvaII	GGWCC	1 cut(s)	500
BbrPI	CACGTG	1 cut(s)	271
Bbv12I	GWGCWC	2 cut(s)	250, 536
BccI	CCATC	4 cut(s)	179, 206, 225, 602
BceAI	ACGGC	1 cut(s)	559
BcgI	CGANNNNNNTGC	2 cut(s)	176, 210
BciT130I	CCWGG	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	428
BfaI	CTAG	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	428
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	1 cut(s)	180
BlpI	GCTNAGC	2 cut(s)	209, 570
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	1 cut(s)	498
Bme18I	GGWCC	1 cut(s)	500
BmeRI	GACNNNNNGTC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	500
BmrFI	CCNGG	1 cut(s)	498
BmsI	GCATC	3 cut(s)	222, 556, 658
BpmI	CTGGAG	1 cut(s)	480
Bpu1102I	GCTNAGC	2 cut(s)	209, 570
BsaAI	YACGTR	2 cut(s)	271, 511
BsaI	GGTCTC	1 cut(s)	428
BsaJI	CCNNGG	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse3DI	GCAATG	3 cut(s)	192, 469, 637
BseBI	CCWGG	1 cut(s)	498
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	6 cut(s)	25, 213, 239, 545, 571, 673
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMI	GCAATG	3 cut(s)	192, 469, 637
BseMII	CTCAG	2 cut(s)	263, 521
BsiHKAI	GWGCWC	2 cut(s)	250, 536
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	48
Bso31I	GGTCTC	1 cut(s)	428
Bsp1286I	GDGCHC	2 cut(s)	250, 536
Bsp143I	GATC	2 cut(s)	61, 282
Bsp1720I	GCTNAGC	2 cut(s)	209, 570
BspACI	CCGC	4 cut(s)	14, 180, 286, 460
BspCNI	CTCAG	2 cut(s)	262, 522
BspPI	GGATC	1 cut(s)	277
BspTI	CTTAAG	1 cut(s)	428
BspTNI	GGTCTC	1 cut(s)	428
BsrDI	GCAATG	3 cut(s)	192, 469, 637
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	2 cut(s)	61, 282
BssT1I	CCWWGG	1 cut(s)	29
Bst2UI	CCWGG	1 cut(s)	498
Bst4CI	ACNGT	3 cut(s)	20, 298, 623
BstAFI	CTTAAG	1 cut(s)	428
BstBAI	YACGTR	2 cut(s)	271, 511
BstDEI	CTNAG	4 cut(s)	209, 249, 530, 570
BstF5I	GGATG	6 cut(s)	25, 213, 239, 545, 571, 673
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	2 cut(s)	64, 285
BstMAI	GTCTC	1 cut(s)	428
BstMBI	GATC	2 cut(s)	61, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	54
BstNI	CCWGG	1 cut(s)	498
BstSCI	CCNGG	1 cut(s)	496
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BtgZI	GCGATG	2 cut(s)	184, 594
BtsCI	GGATG	6 cut(s)	25, 213, 239, 545, 571, 673
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	2 cut(s)	628, 717
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	500
CviAII	CATG	2 cut(s)	80, 705
CviJI	RGCY	4 cut(s)	208, 318, 493, 574
CviKI_1	RGCY	4 cut(s)	208, 318, 493, 574
DdeI	CTNAG	4 cut(s)	209, 249, 530, 570
DpnI	GATC	2 cut(s)	63, 284
DpnII	GATC	2 cut(s)	61, 282
DrdI	GACNNNNNNGTC	1 cut(s)	590
DriI	GACNNNNNGTC	1 cut(s)	371
DseDI	GACNNNNNNGTC	1 cut(s)	590
Eam1105I	GACNNNNNGTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	428
Eco47I	GGWCC	1 cut(s)	500
Eco57I	CTGAAG	1 cut(s)	110
Eco72I	CACGTG	1 cut(s)	271
EcoRII	CCWGG	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	29
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	2 cut(s)	83, 708
FatI	CATG	2 cut(s)	79, 704
FauNDI	CATATG	1 cut(s)	400
Fnu4HI	GCNGC	1 cut(s)	180
FokI	GGATG	6 cut(s)	12, 200, 246, 532, 578, 680
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	480
HhaI	GCGC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	83, 708
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HincII	GTYRAC	2 cut(s)	23, 144
HindII	GTYRAC	2 cut(s)	23, 144
HinfI	GANTC	3 cut(s)	253, 366, 526
HphI	GGTGA	3 cut(s)	292, 670, 689
Hpy166II	GTNNAC	2 cut(s)	23, 144
Hpy188I	TCNGA	6 cut(s)	131, 152, 233, 252, 531, 697
Hpy8I	GTNNAC	2 cut(s)	23, 144
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	4 cut(s)	136, 157, 193, 590
HpyCH4III	ACNGT	3 cut(s)	20, 298, 623
HpyCH4IV	ACGT	3 cut(s)	270, 510, 681
HpyCH4V	TGCA	2 cut(s)	41, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	54
HpyF3I	CTNAG	4 cut(s)	209, 249, 530, 570
HpySE526I	ACGT	3 cut(s)	270, 510, 681
Hsp92II	CATG	2 cut(s)	83, 708
HspAI	GCGC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	61, 282
LpnPI	CCDG	4 cut(s)	263, 483, 510, 516
LweI	GCATC	3 cut(s)	222, 556, 658
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	3 cut(s)	270, 510, 681
MaeIII	GTNAC	3 cut(s)	266, 511, 677
MalI	GATC	2 cut(s)	63, 284
MboI	GATC	2 cut(s)	61, 282
MboII	GAAGA	2 cut(s)	319, 499
MflI	RGATCY	1 cut(s)	61
MhlI	GDGCHC	2 cut(s)	250, 536
MluCI	AATT	4 cut(s)	117, 154, 302, 393
MlyI	GAGTC	1 cut(s)	360
MnlI	CCTC	2 cut(s)	460, 504
MseI	TTAA	4 cut(s)	71, 120, 338, 429
MspCI	CTTAAG	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	498
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	498
MwoI	GCNNNNNNNGC	1 cut(s)	54
NdeI	CATATG	1 cut(s)	400
NdeII	GATC	2 cut(s)	61, 282
NlaIII	CATG	2 cut(s)	83, 708
NmuCI	GTSAC	2 cut(s)	266, 677
PctI	GAATGC	1 cut(s)	48
PfeI	GAWTC	2 cut(s)	253, 526
PfoI	TCCNGGA	1 cut(s)	496
PkrI	GCNGC	1 cut(s)	181
PleI	GAGTC	1 cut(s)	360
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
PpsI	GAGTC	1 cut(s)	360
Ppu21I	YACGTR	2 cut(s)	271, 511
PshBI	ATTAAT	1 cut(s)	71
Psp6I	CCWGG	1 cut(s)	496
PspCI	CACGTG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	496
PspPI	GGNCC	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	61
SaqAI	TTAA	4 cut(s)	71, 120, 338, 429
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	61, 282
Sau96I	GGNCC	1 cut(s)	500
SchI	GAGTC	1 cut(s)	360
ScrFI	CCNGG	1 cut(s)	498
SduI	GDGCHC	2 cut(s)	250, 536
SfaNI	GCATC	3 cut(s)	222, 556, 658
SinI	GGWCC	1 cut(s)	500
SmlI	CTYRAG	1 cut(s)	428
SmoI	CTYRAG	1 cut(s)	428
Sse9I	AATT	4 cut(s)	117, 154, 302, 393
SsiI	CCGC	4 cut(s)	14, 180, 286, 460
SspI	AATATT	1 cut(s)	69
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	3 cut(s)	20, 298, 623
TaiI	ACGT	3 cut(s)	273, 513, 684
TaqI	TCGA	3 cut(s)	186, 220, 594
TasI	AATT	4 cut(s)	117, 154, 302, 393
TauI	GCSGC	1 cut(s)	182
TfiI	GAWTC	2 cut(s)	253, 526
Tru1I	TTAA	4 cut(s)	71, 120, 338, 429
Tru9I	TTAA	4 cut(s)	71, 120, 338, 429
TscAI	CASTG	2 cut(s)	628, 717
TseFI	GTSAC	2 cut(s)	266, 677
Tsp45I	GTSAC	2 cut(s)	266, 677
TspDTI	ATGAA	7 cut(s)	100, 239, 376, 387, 545, 648, 714
TspRI	CASTG	2 cut(s)	628, 717
Vha464I	CTTAAG	1 cut(s)	428
VpaK11BI	GGWCC	1 cut(s)	500
VspI	ATTAAT	1 cut(s)	71
XapI	RAATTY	2 cut(s)	154, 302
XspI	CTAG	1 cut(s)	53

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.