Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Reverse (-)

7314665 .. 7316941

Gene Structure 2277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10870.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCTACAGTAGCAGACAGTCACCATCCTTTGGCATTTACATTTGGAGTTCTAGGAAATCTAGTCTCAACCATGGTTTACTTAGCCCCAGTGCCGACATTTTATCGAATTTACAGGAAAAAATCGACAGAAGGATTCCACTCGGTGCCATATCTGGTAGCAATGTTCAGTTCCATGCTTTGGTTCTATTATGCGTCGCTAAAAAAGAATGCTATGCTGCTCATCACCATTAACTCATTCGGAAGTTTTGCAGAGATGACCTACATCGTCATCTTCGTTGTGTATGCACCAAGGGATGCTAGGAAGCTTACAGTGAAATTATTTGGTATTATGAACGTGGGACTTTTCACCTTGATCCTTGTCGTGTCTCACTTTCTAGTGAGTCGTGCGTACCGGGTCCCAGTTCTTGGATGGATTAATGTTGCCATTTCTACCAGTGTTTTTGCTGCGCCCTTAAGCATTGTGGCACAAGTTATCCGAACAAGAAGTGTCGAATTCATGCCATTTAGGTTATCATTTTTCCTCACTCTGAGTGCCGTTATGTGGTTTGCATATGGATTGTTCCTCAAGGACATATGTATTGCAATTCCAAACGTTCTGGGTTTTGTGTTGGGACTGCTTCAGATGCTGCTGTATGCGATGTACCGAAACCGAAAGCAGGAGATAATAGAAGATCATGAGAAAAAGCTACCGGCTGCTACACCAGATCACGTGAAAAACATTGTGATCATAGCCACATTAGCAGCTTCCGAGGTTCATCCGGTGGATGCTCAACCGAACAATCGCAATGATGATGGTGACGTTAATAATAACGCGGCCGTTACAGAGGCAAAGGAGCATGAACAAACGGATGATCGATCGTCATGTGGAAAATGCTTCCGTCGAGCTTCAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

299

Amino Acids

33.45

Weight (kDa)

9.28

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	3 cut(s)	31, 180, 407
AccII	CGCG	1 cut(s)	815
AciI	CCGC	1 cut(s)	815
AclI	AACGTT	1 cut(s)	594
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	1 cut(s)	816
AcsI	RAATTY	2 cut(s)	108, 494
AcuI	CTGAAG	1 cut(s)	605
AcvI	CACGTG	1 cut(s)	712
AdeI	CACNNNGTG	1 cut(s)	145
AfaI	GTAC	2 cut(s)	392, 644
AfiI	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
AflII	CTTAAG	1 cut(s)	454
AgsI	TTSAA	1 cut(s)	891
AluBI	AGCT	4 cut(s)	307, 688, 746, 887
AluI	AGCT	4 cut(s)	307, 688, 746, 887
Alw26I	GTCTC	2 cut(s)	70, 372
AlwI	GGATC	1 cut(s)	349
AlwNI	CAGNNNCTG	1 cut(s)	628
AoxI	GGCC	1 cut(s)	816
ApeKI	GCWGC	5 cut(s)	217, 446, 628, 695, 743
ApoI	RAATTY	2 cut(s)	108, 494
AseI	ATTAAT	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	397
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	4 cut(s)	14, 217, 340, 809
AvaII	GGWCC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	145
BbrPI	CACGTG	1 cut(s)	712
BbvI	GCAGC	5 cut(s)	204, 433, 615, 682, 755
BccI	CCATC	3 cut(s)	33, 405, 788
BceAI	ACGGC	2 cut(s)	521, 803
BclI	TGATCA	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	395
BcoDI	GTCTC	2 cut(s)	70, 372
BfaI	CTAG	4 cut(s)	53, 62, 300, 377
BfmI	CTRYAG	1 cut(s)	6
BfrI	CTTAAG	1 cut(s)	454
BisI	GCNGC	6 cut(s)	218, 447, 629, 696, 744, 816
BlsI	GCNGC	6 cut(s)	219, 448, 630, 697, 745, 817
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	3 cut(s)	147, 398, 399
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	2 cut(s)	83, 395
BmsI	GCATC	3 cut(s)	286, 615, 757
BmuI	ACTGGG	2 cut(s)	83, 395
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	1 cut(s)	395
Bsa29I	ATCGAT	1 cut(s)	856
BsaAI	YACGTR	1 cut(s)	712
BsaJI	CCNNGG	3 cut(s)	72, 290, 750
BsaWI	WCCGGW	1 cut(s)	760
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
Bse118I	RCCGGY	1 cut(s)	691
Bse1I	ACTGG	3 cut(s)	89, 401, 435
Bse3DI	GCAATG	2 cut(s)	168, 793
BseCI	ATCGAT	1 cut(s)	856
BseDI	CCNNGG	3 cut(s)	72, 290, 750
BseGI	GGATG	6 cut(s)	25, 301, 416, 757, 772, 856
BseLI	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
BseMI	GCAATG	2 cut(s)	168, 793
BseMII	CTCAG	1 cut(s)	521
BseNI	ACTGG	3 cut(s)	89, 401, 435
BseX3I	CGGCCG	1 cut(s)	816
BseXI	GCAGC	5 cut(s)	204, 433, 615, 682, 755
Bsh1236I	CGCG	1 cut(s)	815
Bsh1285I	CGRYCG	2 cut(s)	819, 860
BshFI	GGCC	1 cut(s)	818
BshNI	GGYRCC	1 cut(s)	145
BshVI	ATCGAT	1 cut(s)	856
BsiEI	CGRYCG	2 cut(s)	819, 860
BsiSI	CCGG	3 cut(s)	394, 692, 761
BslFI	GGGAC	3 cut(s)	354, 383, 627
BslI	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
BsmAI	GTCTC	2 cut(s)	70, 372
BsmFI	GGGAC	3 cut(s)	354, 383, 627
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	818
Bsp143I	GATC	6 cut(s)	354, 673, 706, 726, 853, 857
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	815
BspANI	GGCC	1 cut(s)	818
BspCNI	CTCAG	1 cut(s)	522
BspDI	ATCGAT	1 cut(s)	856
BspFNI	CGCG	1 cut(s)	815
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	3 cut(s)	147, 398, 399
BspPI	GGATC	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	145
BspTI	CTTAAG	1 cut(s)	454
BsrDI	GCAATG	2 cut(s)	168, 793
BsrFI	RCCGGY	1 cut(s)	691
BsrI	ACTGG	3 cut(s)	89, 401, 435
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	3 cut(s)	72, 290, 750
BssMI	GATC	6 cut(s)	354, 673, 706, 726, 853, 857
BssT1I	CCWWGG	2 cut(s)	72, 290
Bst4CI	ACNGT	3 cut(s)	10, 20, 313
BstAFI	CTTAAG	1 cut(s)	454
BstBAI	YACGTR	1 cut(s)	712
BstDEI	CTNAG	2 cut(s)	82, 530
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	6 cut(s)	25, 301, 416, 757, 772, 856
BstFNI	CGCG	1 cut(s)	815
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	6 cut(s)	357, 676, 709, 729, 856, 860
BstMAI	GTCTC	2 cut(s)	70, 372
BstMBI	GATC	6 cut(s)	354, 673, 706, 726, 853, 857
BstMCI	CGRYCG	2 cut(s)	819, 860
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 625, 740
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	815
BstV1I	GCAGC	5 cut(s)	204, 433, 615, 682, 755
BstZI	CGGCCG	1 cut(s)	816
Bsu15I	ATCGAT	1 cut(s)	856
BsuRI	GGCC	1 cut(s)	818
BsuTUI	ATCGAT	1 cut(s)	856
BtgI	CCRYGG	1 cut(s)	72
BtgZI	GCGATG	1 cut(s)	653
BtsCI	GGATG	6 cut(s)	25, 301, 416, 757, 772, 856
BtsIMutI	CAGTG	3 cut(s)	96, 318, 442
CaiI	CAGNNNCTG	1 cut(s)	628
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	691
Cfr13I	GGNCC	1 cut(s)	397
ClaI	ATCGAT	1 cut(s)	856
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	391, 643
CviAII	CATG	6 cut(s)	73, 175, 499, 677, 839, 864
CviJI	RGCY	9 cut(s)	5, 86, 307, 688, 695, 734, 746, 818, 887
CviKI_1	RGCY	9 cut(s)	5, 86, 307, 688, 695, 734, 746, 818, 887
CviQI	GTAC	2 cut(s)	391, 643
DdeI	CTNAG	2 cut(s)	82, 530
DpnI	GATC	6 cut(s)	356, 675, 708, 728, 855, 859
DpnII	GATC	6 cut(s)	354, 673, 706, 726, 853, 857
DraIII	CACNNNGTG	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	816
EagI	CGGCCG	1 cut(s)	816
EclXI	CGGCCG	1 cut(s)	816
Eco130I	CCWWGG	2 cut(s)	72, 290
Eco47I	GGWCC	1 cut(s)	397
Eco52I	CGGCCG	1 cut(s)	816
Eco57I	CTGAAG	1 cut(s)	605
Eco72I	CACGTG	1 cut(s)	712
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	494
EcoT14I	CCWWGG	2 cut(s)	72, 290
ErhI	CCWWGG	2 cut(s)	72, 290
FaeI	CATG	6 cut(s)	76, 178, 502, 680, 842, 867
FaqI	GGGAC	3 cut(s)	354, 383, 627
FatI	CATG	6 cut(s)	72, 174, 498, 676, 838, 863
FauNDI	CATATG	2 cut(s)	553, 575
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	6 cut(s)	218, 447, 629, 696, 744, 816
FokI	GGATG	6 cut(s)	12, 308, 423, 744, 779, 863
Fsp4HI	GCNGC	6 cut(s)	218, 447, 629, 696, 744, 816
FspBI	CTAG	4 cut(s)	53, 62, 300, 377
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	6 cut(s)	218, 447, 629, 696, 744, 816
HaeIII	GGCC	1 cut(s)	818
HapII	CCGG	3 cut(s)	394, 692, 761
HgaI	GACGC	1 cut(s)	183
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	6 cut(s)	76, 178, 502, 680, 842, 867
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	305
HinfI	GANTC	2 cut(s)	135, 382
HpaII	CCGG	3 cut(s)	394, 692, 761
HphI	GGTGA	4 cut(s)	14, 217, 340, 809
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	5 cut(s)	242, 479, 531, 624, 751
Hpy188III	TCNNGA	1 cut(s)	677
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	2 cut(s)	199, 885
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	3 cut(s)	10, 20, 313
HpyCH4IV	ACGT	4 cut(s)	336, 594, 711, 801
HpyCH4V	TGCA	4 cut(s)	251, 287, 551, 584
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 625, 740
HpyF3I	CTNAG	2 cut(s)	82, 530
HpySE526I	ACGT	4 cut(s)	336, 594, 711, 801
Hsp92II	CATG	6 cut(s)	76, 178, 502, 680, 842, 867
HspAI	GCGC	1 cut(s)	449
KflI	GGGWCCC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	6 cut(s)	354, 673, 706, 726, 853, 857
LmnI	GCTCC	1 cut(s)	835
Lsp1109I	GCAGC	5 cut(s)	204, 433, 615, 682, 755
LweI	GCATC	3 cut(s)	286, 615, 757
MaeI	CTAG	4 cut(s)	53, 62, 300, 377
MaeII	ACGT	4 cut(s)	336, 594, 711, 801
MaeIII	GTNAC	3 cut(s)	20, 797, 820
MalI	GATC	6 cut(s)	356, 675, 708, 728, 855, 859
MboI	GATC	6 cut(s)	354, 673, 706, 726, 853, 857
MboII	GAAGA	2 cut(s)	265, 683
MluCI	AATT	4 cut(s)	108, 317, 494, 585
MlyI	GAGTC	1 cut(s)	391
MnlI	CCTC	4 cut(s)	533, 575, 745, 820
MseI	TTAA	4 cut(s)	231, 417, 455, 804
MspCI	CTTAAG	1 cut(s)	454
MspI	CCGG	3 cut(s)	394, 692, 761
MspR9I	CCNGG	1 cut(s)	395
Mva1269I	GAATGC	1 cut(s)	214
MvnI	CGCG	1 cut(s)	815
MwoI	GCNNNNNNNGC	3 cut(s)	11, 625, 740
NciI	CCSGG	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	72
NdeI	CATATG	2 cut(s)	553, 575
NdeII	GATC	6 cut(s)	354, 673, 706, 726, 853, 857
NlaIII	CATG	6 cut(s)	76, 178, 502, 680, 842, 867
NlaIV	GGNNCC	3 cut(s)	147, 398, 399
NmuCI	GTSAC	2 cut(s)	20, 797
PagI	TCATGA	1 cut(s)	676
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	1 cut(s)	135
PflMI	CCANNNNNTGG	3 cut(s)	31, 180, 407
PkrI	GCNGC	6 cut(s)	219, 448, 630, 697, 745, 817
Ple19I	CGATCG	1 cut(s)	860
PleI	GAGTC	1 cut(s)	390
PmaCI	CACGTG	1 cut(s)	712
PmlI	CACGTG	1 cut(s)	712
PpsI	GAGTC	1 cut(s)	390
Ppu21I	YACGTR	1 cut(s)	712
PpuMI	RGGWCCY	1 cut(s)	397
PshBI	ATTAAT	1 cut(s)	417
Psp1406I	AACGTT	1 cut(s)	594
Psp5II	RGGWCCY	1 cut(s)	397
PspCI	CACGTG	1 cut(s)	712
PspN4I	GGNNCC	3 cut(s)	147, 398, 399
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	628
PvuI	CGATCG	1 cut(s)	860
RsaI	GTAC	2 cut(s)	392, 644
RsaNI	GTAC	2 cut(s)	391, 643
SaqAI	TTAA	4 cut(s)	231, 417, 455, 804
SatI	GCNGC	6 cut(s)	218, 447, 629, 696, 744, 816
Sau3AI	GATC	6 cut(s)	354, 673, 706, 726, 853, 857
Sau96I	GGNCC	1 cut(s)	397
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	1 cut(s)	395
SfaNI	GCATC	3 cut(s)	286, 615, 757
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	397
SmlI	CTYRAG	2 cut(s)	454, 566
SmoI	CTYRAG	2 cut(s)	454, 566
Sse9I	AATT	4 cut(s)	108, 317, 494, 585
SsiI	CCGC	1 cut(s)	815
SspMI	CTAG	4 cut(s)	53, 62, 300, 377
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	2 cut(s)	72, 290
TaaI	ACNGT	3 cut(s)	10, 20, 313
TaiI	ACGT	4 cut(s)	339, 597, 714, 804
TaqI	TCGA	5 cut(s)	106, 125, 492, 856, 883
TasI	AATT	4 cut(s)	108, 317, 494, 585
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	4 cut(s)	231, 417, 455, 804
Tru9I	TTAA	4 cut(s)	231, 417, 455, 804
TscAI	CASTG	3 cut(s)	96, 318, 442
TseFI	GTSAC	2 cut(s)	20, 797
TseI	GCWGC	5 cut(s)	217, 446, 628, 695, 743
Tsp45I	GTSAC	2 cut(s)	20, 797
TspDTI	ATGAA	4 cut(s)	347, 487, 746, 855
TspGWI	ACGGA	2 cut(s)	863, 869
TspRI	CASTG	3 cut(s)	96, 318, 442
Van91I	CCANNNNNTGG	3 cut(s)	31, 180, 407
Vha464I	CTTAAG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	397
VspI	ATTAAT	1 cut(s)	417
XapI	RAATTY	2 cut(s)	108, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	408
XspI	CTAG	4 cut(s)	53, 62, 300, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.