Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

54285208 .. 54287562

Gene Structure 2355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39829

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGGGGCAGTAGCAGACAGTCAACATCCTTGGGCATTTGCATTTGGCATCCTAGGTAATCTAATTTCCTTCATGGTTTACTTAGCCCCAGTGCCAACGTTTTACCGGATTTACAGAAAGAGATCTACTGAGGGTTTCCAATCGGTGCCGTATCTGGTAGCACTGTTTAGTGCCACGCTTTGGCTCTACTATGCCATGCTGAAGCAAAATGCTGTGCTTCTTATCACAATCAACACCTTCGGAAGTGTAATTGAGACTCTGTACATCGCCATGTATATTGTTTATGCAACAAAGGCTTCAAGGAAATTCACTATCAAGTTACTAGGGTTTATGAACTTCGGACTCTTCTCATTGATCCTTGTCGTTTTACACTATGCATTTCATAGTCAATACCGTGCCCCGGTTCTCGGATGGATCAACGTTGCCATTTCCGTTTGTGTTTTTGCAGCGCCCTTGAGTATTGTGGCGCAGGTGATCCGCACAAAAAGTGTTGAATTTATGCCATTCAGCTTATCATTCTTCCTTACTTTGAGTGCCGTGATGTGGTTTGCCTATGGACTGTTCCTCAAGGACATTTGCATAGCACTTCCAAACGTGTTAGGTTTTGTCTTGGGTCTCCTTCAGATGCTACTCTACGCCATATACAGAAACCGCAAGCAGGTCATAGTTGATCCGGAGAAGAAGCTTCCGGCATCGGAGCATGTGAAAAACATAGTGATTTTGAGCACTATCGCAACATCCGAAGTTCATCCGGTGGATGCTAAGCCGTGCGATGGCAATGACGTCGAAGACGTGGACGGCAAAGATGAAAATAAGGATGTTGATGGTGATGAACATGAGAAGTGCGTGGTGGTGGTGGTGGATGTGGATGCATCGGGTGAGCTTCAACTGAAATCTGAAGAACCATGTGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

305

Amino Acids

34.03

Weight (kDa)

6.07

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	14 - 98	1.6e-25	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 219	1.8e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	460
AatII	GACGTC	1 cut(s)	786
Acc36I	ACCTGC	2 cut(s)	460, 649
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	673
AciI	CCGC	2 cut(s)	478, 652
AclI	AACGTT	2 cut(s)	98, 420
AclWI	GGATC	4 cut(s)	349, 422, 469, 665
AcsI	RAATTY	2 cut(s)	305, 494
AcuI	CTGAAG	3 cut(s)	221, 605, 918
AcyI	GRCGYC	1 cut(s)	783
AfaI	GTAC	1 cut(s)	263
AfiI	CCNNNNNNNGG	6 cut(s)	180, 400, 407, 543, 658, 773
AflIII	ACRYGT	1 cut(s)	594
AgsI	TTSAA	3 cut(s)	300, 494, 887
AjiI	CACGTC	1 cut(s)	793
AluBI	AGCT	3 cut(s)	510, 685, 883
AluI	AGCT	3 cut(s)	510, 685, 883
Alw21I	GWGCWC	1 cut(s)	728
Alw26I	GTCTC	2 cut(s)	248, 620
AlwI	GGATC	4 cut(s)	349, 422, 469, 665
Aor13HI	TCCGGA	1 cut(s)	673
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	2 cut(s)	305, 494
AspA2I	CCTAGG	1 cut(s)	52
AspLEI	GCGC	2 cut(s)	451, 469
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	3 cut(s)	484, 839, 890
AvrII	CCTAGG	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	400
BanI	GGYRCC	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	795
Bbv12I	GWGCWC	1 cut(s)	728
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	3 cut(s)	405, 767, 818
BceAI	ACGGC	4 cut(s)	133, 521, 751, 814
BcgI	CGANNNNNNTGC	2 cut(s)	766, 800
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	2 cut(s)	248, 620
BfaI	CTAG	2 cut(s)	53, 323
BfoI	RGCGCY	1 cut(s)	452
BfuAI	ACCTGC	2 cut(s)	460, 649
BglII	AGATCT	1 cut(s)	122
BisI	GCNGC	1 cut(s)	447
BlnI	CCTAGG	1 cut(s)	52
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	401
BmgBI	CACGTC	1 cut(s)	793
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	401
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	6 cut(s)	57, 615, 701, 748, 859, 881
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	795
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	2 cut(s)	475, 551
BpuMI	CCSGG	1 cut(s)	401
BsaHI	GRCGYC	1 cut(s)	783
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	3 cut(s)	29, 52, 399
BsaWI	WCCGGW	3 cut(s)	105, 673, 751
Bsc4I	CCNNNNNNNGG	6 cut(s)	180, 400, 407, 543, 658, 773
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	784
BseAI	TCCGGA	1 cut(s)	673
BseDI	CCNNGG	3 cut(s)	29, 52, 399
BseGI	GGATG	9 cut(s)	25, 48, 416, 737, 748, 763, 823, 868, 874
BseLI	CCNNNNNNNGG	6 cut(s)	180, 400, 407, 543, 658, 773
BseMI	GCAATG	1 cut(s)	784
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	1 cut(s)	458
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	728
BsiSI	CCGG	5 cut(s)	106, 401, 674, 689, 752
BslI	CCNNNNNNNGG	6 cut(s)	180, 400, 407, 543, 658, 773
BsmAI	GTCTC	2 cut(s)	248, 620
Bso31I	GGTCTC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	400, 728
Bsp13I	TCCGGA	1 cut(s)	673
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	5 cut(s)	122, 354, 414, 474, 670
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	2 cut(s)	478, 652
BspCNI	CTCAG	1 cut(s)	121
BspEI	TCCGGA	1 cut(s)	673
BspLI	GGNNCC	1 cut(s)	147
BspMI	ACCTGC	2 cut(s)	460, 649
BspPI	GGATC	4 cut(s)	349, 422, 469, 665
BspT107I	GGYRCC	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	784
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	29, 52, 399
BssMI	GATC	5 cut(s)	122, 354, 414, 474, 670
BssNI	GRCGYC	1 cut(s)	783
BssT1I	CCWWGG	2 cut(s)	29, 52
Bst4CI	ACNGT	4 cut(s)	20, 165, 395, 561
Bst6I	CTCTTC	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	783
BstAUI	TGTACA	1 cut(s)	261
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	3 cut(s)	82, 129, 762
BstF5I	GGATG	9 cut(s)	25, 48, 416, 737, 748, 763, 823, 868, 874
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	2 cut(s)	451, 469
BstKTI	GATC	5 cut(s)	125, 357, 417, 477, 673
BstMAI	GTCTC	2 cut(s)	248, 620
BstMBI	GATC	5 cut(s)	122, 354, 414, 474, 670
BstMWI	GCNNNNNNNGC	1 cut(s)	293
BstNSI	RCATGY	1 cut(s)	704
BstSCI	CCNGG	1 cut(s)	399
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	1 cut(s)	795
BstX2I	RGATCY	1 cut(s)	122
BstYI	RGATCY	1 cut(s)	122
BtgZI	GCGATG	2 cut(s)	250, 786
BtrI	CACGTC	1 cut(s)	793
BtsCI	GGATG	9 cut(s)	25, 48, 416, 737, 748, 763, 823, 868, 874
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	3 cut(s)	96, 161, 918
BveI	ACCTGC	2 cut(s)	460, 649
Cac8I	GCNNGC	1 cut(s)	656
CfoI	GCGC	2 cut(s)	451, 469
Csp6I	GTAC	1 cut(s)	262
CviAII	CATG	6 cut(s)	73, 196, 271, 701, 836, 906
CviJI	RGCY	7 cut(s)	86, 184, 296, 510, 685, 766, 883
CviKI_1	RGCY	7 cut(s)	86, 184, 296, 510, 685, 766, 883
CviQI	GTAC	1 cut(s)	262
DdeI	CTNAG	3 cut(s)	82, 129, 762
DpnI	GATC	5 cut(s)	124, 356, 416, 476, 672
DpnII	GATC	5 cut(s)	122, 354, 414, 474, 670
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	29, 52
Eco31I	GGTCTC	1 cut(s)	620
Eco57I	CTGAAG	3 cut(s)	221, 605, 918
EcoT14I	CCWWGG	2 cut(s)	29, 52
EcoT22I	ATGCAT	2 cut(s)	379, 874
ErhI	CCWWGG	2 cut(s)	29, 52
FaeI	CATG	6 cut(s)	76, 199, 274, 704, 839, 909
FatI	CATG	6 cut(s)	72, 195, 270, 700, 835, 905
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	9 cut(s)	12, 35, 423, 724, 735, 770, 830, 875, 881
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	2 cut(s)	53, 323
GlaI	GCGC	2 cut(s)	450, 468
GluI	GCNGC	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	452
HapII	CCGG	5 cut(s)	106, 401, 674, 689, 752
HhaI	GCGC	2 cut(s)	451, 469
Hin1I	GRCGYC	1 cut(s)	783
Hin1II	CATG	6 cut(s)	76, 199, 274, 704, 839, 909
Hin6I	GCGC	2 cut(s)	449, 467
HinP1I	GCGC	2 cut(s)	449, 467
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	683
HinfI	GANTC	2 cut(s)	256, 342
HpaII	CCGG	5 cut(s)	106, 401, 674, 689, 752
HphI	GGTGA	3 cut(s)	484, 839, 890
Hpy166II	GTNNAC	3 cut(s)	23, 79, 796
Hpy188I	TCNGA	7 cut(s)	242, 341, 410, 624, 697, 742, 898
Hpy188III	TCNNGA	1 cut(s)	674
Hpy8I	GTNNAC	3 cut(s)	23, 79, 796
Hpy99I	CGWCG	1 cut(s)	788
HpyAV	CCTTC	3 cut(s)	79, 247, 629
HpyCH4III	ACNGT	4 cut(s)	20, 165, 395, 561
HpyCH4IV	ACGT	5 cut(s)	98, 420, 594, 783, 792
HpyCH4V	TGCA	7 cut(s)	41, 287, 377, 446, 579, 872, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	293
HpyF3I	CTNAG	3 cut(s)	82, 129, 762
HpySE526I	ACGT	5 cut(s)	98, 420, 594, 783, 792
Hsp92I	GRCGYC	1 cut(s)	783
Hsp92II	CATG	6 cut(s)	76, 199, 274, 704, 839, 909
HspAI	GCGC	2 cut(s)	449, 467
Kpn2I	TCCGGA	1 cut(s)	673
Kzo9I	GATC	5 cut(s)	122, 354, 414, 474, 670
LmnI	GCTCC	1 cut(s)	697
LpnPI	CCDG	9 cut(s)	102, 119, 140, 414, 455, 644, 687, 702, 765
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	6 cut(s)	57, 615, 701, 748, 859, 881
MaeI	CTAG	2 cut(s)	53, 323
MaeII	ACGT	5 cut(s)	98, 420, 594, 783, 792
MaeIII	GTNAC	1 cut(s)	318
MalI	GATC	5 cut(s)	124, 356, 416, 476, 672
MboI	GATC	5 cut(s)	122, 354, 414, 474, 670
MboII	GAAGA	5 cut(s)	337, 511, 691, 800, 911
MflI	RGATCY	1 cut(s)	122
MhlI	GDGCHC	2 cut(s)	400, 728
MluCI	AATT	4 cut(s)	63, 249, 305, 494
MlyI	GAGTC	2 cut(s)	250, 336
MnlI	CCTC	2 cut(s)	124, 575
Mph1103I	ATGCAT	2 cut(s)	379, 874
MroI	TCCGGA	1 cut(s)	673
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	5 cut(s)	106, 401, 674, 689, 752
MspR9I	CCNGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	293
NciI	CCSGG	1 cut(s)	401
NdeII	GATC	5 cut(s)	122, 354, 414, 474, 670
NlaIII	CATG	6 cut(s)	76, 199, 274, 704, 839, 909
NlaIV	GGNNCC	1 cut(s)	147
NsiI	ATGCAT	2 cut(s)	379, 874
NspI	RCATGY	1 cut(s)	704
PaqCI	CACCTGC	1 cut(s)	460
PcsI	WCGNNNNNNNCGW	2 cut(s)	738, 789
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	2 cut(s)	250, 336
PpsI	GAGTC	2 cut(s)	250, 336
Psp1406I	AACGTT	2 cut(s)	98, 420
PspN4I	GGNNCC	1 cut(s)	147
PsuI	RGATCY	1 cut(s)	122
RsaI	GTAC	1 cut(s)	263
RsaNI	GTAC	1 cut(s)	262
RseI	CAYNNNNRTG	1 cut(s)	269
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	5 cut(s)	122, 354, 414, 474, 670
SchI	GAGTC	2 cut(s)	250, 336
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	2 cut(s)	400, 728
SfaNI	GCATC	6 cut(s)	57, 615, 701, 748, 859, 881
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	2 cut(s)	454, 566
SmoI	CTYRAG	2 cut(s)	454, 566
Sse9I	AATT	4 cut(s)	63, 249, 305, 494
SsiI	CCGC	2 cut(s)	478, 652
SspMI	CTAG	2 cut(s)	53, 323
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	29, 52
TaaI	ACNGT	4 cut(s)	20, 165, 395, 561
TaiI	ACGT	5 cut(s)	101, 423, 597, 786, 795
TaqI	TCGA	1 cut(s)	786
TasI	AATT	4 cut(s)	63, 249, 305, 494
TatI	WGTACW	1 cut(s)	261
TscAI	CASTG	3 cut(s)	96, 168, 918
TseI	GCWGC	1 cut(s)	446
TspDTI	ATGAA	6 cut(s)	61, 347, 371, 737, 822, 846
TspGWI	ACGGA	1 cut(s)	421
TspRI	CASTG	3 cut(s)	96, 168, 918
Van91I	CCANNNNNTGG	1 cut(s)	180
XapI	RAATTY	2 cut(s)	305, 494
XceI	RCATGY	1 cut(s)	704
XmaJI	CCTAGG	1 cut(s)	52
XspI	CTAG	2 cut(s)	53, 323
ZraI	GACGTC	1 cut(s)	784
Zsp2I	ATGCAT	2 cut(s)	379, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.