Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003708.1

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Reverse (-)

16034 .. 17381

Gene Structure 1348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003708.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

atggtttacttagccccagtgccaacgttttaccggatttacagaaagagatcgactgagggtttccaatcggtgccgtatctggtagcactgtttagtgccacgctttggctctactatgccatgctgaagcaaaatgctgtgcttctcatcacaatcaacaccttcggaagtgtaatagagactctgtacatcgccatgtatattgtttatgcaacaaaggcttcaaggaaattcactatcaagttactagggtttatgaactttggactcttctccttgatccttgttgttttacactatgcatttcatagtcaataccgtgccccggttctcggatggatcaacgttgccatttcagtttgtgtttttgcagcgcccttgagtattgtggcgcaggtgatccgcacaaaaagtgttgaatttatgccattcagcttatcattcttccttactttgagtgccgtgatgtggtttgcctatggactgttcctcaaggacatttgcatagcacttccaaacgtgttaggttttgtcttgggtctccttcagatgctgctctacgccatatacagaaaccgcaagcaggtcatagttgatctggagaagaagcttccggcatcagagcatgtgaaaaacatagtgattctgagcactatcgcaacatccgaagttcatccggtggatgctaagcagtgcgatggcaatgacgtaaaagatgtggacggaaaagatgaaaataaggatgttgatggtgatgaacatgagaagcgcgtggtggtggtggtggtggatgtgaatgcatcgggtgagcttcaactaaaatctgaagaaccatgtgcaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

282

Amino Acids

31.73

Weight (kDa)

8.22

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	388
Acc36I	ACCTGC	2 cut(s)	388, 577
AccB1I	GGYRCC	1 cut(s)	73
AccB7I	CCANNNNNTGG	1 cut(s)	108
AccII	CGCG	1 cut(s)	774
AciI	CCGC	2 cut(s)	406, 580
AclI	AACGTT	2 cut(s)	26, 348
AclWI	GGATC	3 cut(s)	277, 350, 397
AcsI	RAATTY	2 cut(s)	233, 422
AcuI	CTGAAG	3 cut(s)	149, 533, 849
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	5 cut(s)	108, 328, 335, 471, 586
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	3 cut(s)	228, 422, 818
AluBI	AGCT	3 cut(s)	438, 613, 814
AluI	AGCT	3 cut(s)	438, 613, 814
Alw21I	GWGCWC	1 cut(s)	656
Alw26I	GTCTC	2 cut(s)	176, 548
AlwI	GGATC	3 cut(s)	277, 350, 397
AlwNI	CAGNNNCTG	1 cut(s)	556
ApeKI	GCWGC	2 cut(s)	374, 556
ApoI	RAATTY	2 cut(s)	233, 422
AspLEI	GCGC	3 cut(s)	379, 397, 774
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	3 cut(s)	412, 767, 821
BaeGI	GKGCMC	1 cut(s)	328
BanI	GGYRCC	1 cut(s)	73
Bbv12I	GWGCWC	1 cut(s)	656
BbvI	GCAGC	2 cut(s)	386, 543
BccI	CCATC	3 cut(s)	333, 695, 746
BceAI	ACGGC	2 cut(s)	61, 449
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	2 cut(s)	176, 548
BfaI	CTAG	1 cut(s)	251
BfoI	RGCGCY	1 cut(s)	380
BfuAI	ACCTGC	2 cut(s)	388, 577
BisI	GCNGC	2 cut(s)	375, 557
BlpI	GCTNAGC	1 cut(s)	690
BlsI	GCNGC	2 cut(s)	376, 558
Bme1390I	CCNGG	1 cut(s)	329
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	11
BmsI	GCATC	4 cut(s)	543, 629, 676, 812
BmuI	ACTGGG	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	623
Bpu1102I	GCTNAGC	1 cut(s)	690
BpuEI	CTTGAG	2 cut(s)	403, 479
BpuMI	CCSGG	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	2 cut(s)	33, 679
Bsc4I	CCNNNNNNNGG	5 cut(s)	108, 328, 335, 471, 586
Bse1I	ACTGG	1 cut(s)	17
Bse3DI	GCAATG	2 cut(s)	712, 849
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	6 cut(s)	344, 665, 676, 691, 751, 799
BseLI	CCNNNNNNNGG	5 cut(s)	108, 328, 335, 471, 586
BseMI	GCAATG	2 cut(s)	712, 849
BseMII	CTCAG	2 cut(s)	48, 641
BseNI	ACTGG	1 cut(s)	17
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	2 cut(s)	386, 543
Bsh1236I	CGCG	1 cut(s)	774
BshNI	GGYRCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	656
BsiSI	CCGG	4 cut(s)	34, 329, 617, 680
BslI	CCNNNNNNNGG	5 cut(s)	108, 328, 335, 471, 586
BsmAI	GTCTC	2 cut(s)	176, 548
BsmI	GAATGC	1 cut(s)	805
Bso31I	GGTCTC	1 cut(s)	548
Bsp1286I	GDGCHC	2 cut(s)	328, 656
Bsp1407I	TGTACA	1 cut(s)	189
Bsp143I	GATC	5 cut(s)	50, 282, 342, 402, 598
Bsp1720I	GCTNAGC	1 cut(s)	690
BspACI	CCGC	2 cut(s)	406, 580
BspCNI	CTCAG	2 cut(s)	49, 642
BspFNI	CGCG	1 cut(s)	774
BspLI	GGNNCC	1 cut(s)	75
BspMI	ACCTGC	2 cut(s)	388, 577
BspPI	GGATC	3 cut(s)	277, 350, 397
BspT107I	GGYRCC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	548
BsrDI	GCAATG	2 cut(s)	712, 849
BsrGI	TGTACA	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	5 cut(s)	50, 282, 342, 402, 598
Bst4CI	ACNGT	3 cut(s)	93, 323, 489
Bst6I	CTCTTC	1 cut(s)	278
BstAUI	TGTACA	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	584
BstDEI	CTNAG	4 cut(s)	10, 57, 650, 690
BstF5I	GGATG	6 cut(s)	344, 665, 676, 691, 751, 799
BstFNI	CGCG	1 cut(s)	774
BstH2I	RGCGCY	1 cut(s)	380
BstHHI	GCGC	3 cut(s)	379, 397, 774
BstKTI	GATC	5 cut(s)	53, 285, 345, 405, 601
BstMAI	GTCTC	2 cut(s)	176, 548
BstMBI	GATC	5 cut(s)	50, 282, 342, 402, 598
BstMWI	GCNNNNNNNGC	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	632
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	328
BstUI	CGCG	1 cut(s)	774
BstV1I	GCAGC	2 cut(s)	386, 543
BtgZI	GCGATG	2 cut(s)	178, 714
BtsCI	GGATG	6 cut(s)	344, 665, 676, 691, 751, 799
BtsI	GCAGTG	1 cut(s)	701
BtsIMutI	CAGTG	3 cut(s)	24, 89, 701
BveI	ACCTGC	2 cut(s)	388, 577
Cac8I	GCNNGC	1 cut(s)	584
CaiI	CAGNNNCTG	1 cut(s)	556
CfoI	GCGC	3 cut(s)	379, 397, 774
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	5 cut(s)	124, 199, 629, 764, 837
CviJI	RGCY	6 cut(s)	14, 112, 224, 438, 613, 814
CviKI_1	RGCY	6 cut(s)	14, 112, 224, 438, 613, 814
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	4 cut(s)	10, 57, 650, 690
DpnI	GATC	5 cut(s)	52, 284, 344, 404, 600
DpnII	GATC	5 cut(s)	50, 282, 342, 402, 598
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco31I	GGTCTC	1 cut(s)	548
Eco57I	CTGAAG	3 cut(s)	149, 533, 849
EcoT22I	ATGCAT	2 cut(s)	307, 805
FaeI	CATG	5 cut(s)	127, 202, 632, 767, 840
FatI	CATG	5 cut(s)	123, 198, 628, 763, 836
Fnu4HI	GCNGC	2 cut(s)	375, 557
FokI	GGATG	6 cut(s)	351, 652, 663, 698, 758, 806
Fsp4HI	GCNGC	2 cut(s)	375, 557
FspBI	CTAG	1 cut(s)	251
GlaI	GCGC	3 cut(s)	378, 396, 773
GluI	GCNGC	2 cut(s)	375, 557
GsuI	CTGGAG	1 cut(s)	623
HaeII	RGCGCY	1 cut(s)	380
HapII	CCGG	4 cut(s)	34, 329, 617, 680
HhaI	GCGC	3 cut(s)	379, 397, 774
Hin1II	CATG	5 cut(s)	127, 202, 632, 767, 840
Hin6I	GCGC	3 cut(s)	377, 395, 772
HinP1I	GCGC	3 cut(s)	377, 395, 772
HindIII	AAGCTT	1 cut(s)	611
HinfI	GANTC	3 cut(s)	184, 270, 646
HpaII	CCGG	4 cut(s)	34, 329, 617, 680
HphI	GGTGA	3 cut(s)	412, 767, 821
Hpy166II	GTNNAC	2 cut(s)	7, 724
Hpy188I	TCNGA	7 cut(s)	170, 338, 552, 625, 651, 670, 829
Hpy188III	TCNNGA	1 cut(s)	602
Hpy8I	GTNNAC	2 cut(s)	7, 724
HpyAV	CCTTC	2 cut(s)	175, 557
HpyCH4III	ACNGT	3 cut(s)	93, 323, 489
HpyCH4IV	ACGT	4 cut(s)	26, 348, 522, 711
HpyCH4V	TGCA	6 cut(s)	215, 305, 374, 507, 803, 842
HpyF10VI	GCNNNNNNNGC	1 cut(s)	221
HpyF3I	CTNAG	4 cut(s)	10, 57, 650, 690
HpySE526I	ACGT	4 cut(s)	26, 348, 522, 711
Hsp92II	CATG	5 cut(s)	127, 202, 632, 767, 840
HspAI	GCGC	3 cut(s)	377, 395, 772
Kzo9I	GATC	5 cut(s)	50, 282, 342, 402, 598
LpnPI	CCDG	9 cut(s)	30, 47, 68, 342, 383, 572, 587, 630, 693
Lsp1109I	GCAGC	2 cut(s)	386, 543
LweI	GCATC	4 cut(s)	543, 629, 676, 812
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	4 cut(s)	26, 348, 522, 711
MaeIII	GTNAC	1 cut(s)	246
MalI	GATC	5 cut(s)	52, 284, 344, 404, 600
MboI	GATC	5 cut(s)	50, 282, 342, 402, 598
MboII	GAAGA	4 cut(s)	265, 439, 619, 842
MhlI	GDGCHC	2 cut(s)	328, 656
MluCI	AATT	2 cut(s)	233, 422
MlyI	GAGTC	2 cut(s)	178, 264
MnlI	CCTC	2 cut(s)	52, 503
Mph1103I	ATGCAT	2 cut(s)	307, 805
MslI	CAYNNNNRTG	1 cut(s)	197
MspI	CCGG	4 cut(s)	34, 329, 617, 680
MspR9I	CCNGG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	805
MvnI	CGCG	1 cut(s)	774
MwoI	GCNNNNNNNGC	1 cut(s)	221
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	5 cut(s)	50, 282, 342, 402, 598
NlaIII	CATG	5 cut(s)	127, 202, 632, 767, 840
NlaIV	GGNNCC	1 cut(s)	75
NsiI	ATGCAT	2 cut(s)	307, 805
NspI	RCATGY	1 cut(s)	632
PaqCI	CACCTGC	1 cut(s)	388
PcsI	WCGNNNNNNNCGW	1 cut(s)	666
PctI	GAATGC	1 cut(s)	805
PfeI	GAWTC	1 cut(s)	646
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	376, 558
PleI	GAGTC	2 cut(s)	178, 264
PpsI	GAGTC	2 cut(s)	178, 264
Psp1406I	AACGTT	2 cut(s)	26, 348
PspN4I	GGNNCC	1 cut(s)	75
PstNI	CAGNNNCTG	1 cut(s)	556
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
RseI	CAYNNNNRTG	1 cut(s)	197
SatI	GCNGC	2 cut(s)	375, 557
Sau3AI	GATC	5 cut(s)	50, 282, 342, 402, 598
SchI	GAGTC	2 cut(s)	178, 264
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	2 cut(s)	328, 656
SfaNI	GCATC	4 cut(s)	543, 629, 676, 812
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	2 cut(s)	382, 494
SmoI	CTYRAG	2 cut(s)	382, 494
Sse9I	AATT	2 cut(s)	233, 422
SsiI	CCGC	2 cut(s)	406, 580
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	3 cut(s)	93, 323, 489
TaiI	ACGT	4 cut(s)	29, 351, 525, 714
TaqI	TCGA	1 cut(s)	53
TasI	AATT	2 cut(s)	233, 422
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	646
TscAI	CASTG	3 cut(s)	24, 96, 701
TseI	GCWGC	2 cut(s)	374, 556
TspDTI	ATGAA	5 cut(s)	275, 299, 665, 750, 774
TspGWI	ACGGA	1 cut(s)	741
TspRI	CASTG	3 cut(s)	24, 96, 701
Van91I	CCANNNNNTGG	1 cut(s)	108
XapI	RAATTY	2 cut(s)	233, 422
XceI	RCATGY	1 cut(s)	632
XspI	CTAG	1 cut(s)	251
Zsp2I	ATGCAT	2 cut(s)	307, 805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.