Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

44996003 .. 44998940

Gene Structure 2938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G020890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGACAAACTGATGGTACGAAAATGGCAGAGTTTAAACTTACTTGATTTGGAAGTATTGACCCCTTTTGTAATGAGAAATGGGAGTAATCTAATTTCCTTCATGGTTTACTTAAGCCCAGTGCCAACGTTTTACCGGATTTACAGAAATAAATCGACTGAAGGTTTCCAATCGGTGCCATATCTGGTAGCACTGTTTAGCTCCACGCTTTGGCTCTACTATGCCATGCTGAAGCAAAATGTTGTGCTTCTCATCACAGTTAACACCTTCGGAAGTGTGATGGAGACTGTGTACATCGCCATGTACATTCTTTATGCAACAAACACTTCAAGGGTACAAATTCACTATCAAGTTATTCGGGTTTATGAACTTGGGACTCTTCTCCTTGATCATTGTCCTGTACACTGTGCATTACATAGTCAATACCGTGCCCCGGTTCTCGGATGGATCAACGTTGCCATTACCGTTTGTGCTTTTGCAGCACCTTTGAGTATTGTGGCACAGGTCATCCGCACAGAAAGTGTTGAATTTATGCCGTTCAGCTTATCATTCTTCCTTACATTGAGTGGCATGTTGTGGTTTGCGTATGGACTGTTCCTCAAGGACATACGCATAGCACTTCCAAACGGGTTAGGTTTTGTCTTGGGTCTACTTCAGATGTTGTTCTATGCCATATACAGAAACCGAAAGCTAGTCTTAGTTGATATGGATGAAAACCTTCCGGCACCGGAGCATGTGACAAACGTTGCGATTCTGAGCACTATCGCAACATCCGAAGTTCATTCAGTGAATGCTAAGCCGTGCGATGGCGATGACGTCGAAGACGGCAAAGATGGAAATAAGGACAGTGATGGCGATTGCGTGGTGGTGGTGGATGTGGATGCGGATGCTTCGGGTGATCACCTTCCACTGAAATCTGATGAATCATGTGTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

312

Amino Acids

34.95

Weight (kDa)

5.19

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	30 - 108	2.5e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	146 - 230	7.9e-26	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	819
AccB1I	GGYRCC	2 cut(s)	175, 724
AccB7I	CCANNNNNTGG	1 cut(s)	210
AccI	GTMKAC	1 cut(s)	649
AciI	CCGC	2 cut(s)	511, 884
AclI	AACGTT	3 cut(s)	128, 453, 744
AclWI	GGATC	1 cut(s)	455
AcsI	RAATTY	2 cut(s)	339, 527
AcuI	CTGAAG	3 cut(s)	180, 251, 638
AcyI	GRCGYC	1 cut(s)	816
AfaI	GTAC	5 cut(s)	18, 293, 305, 336, 402
AfiI	CCNNNNNNNGG	4 cut(s)	210, 433, 440, 806
AflII	CTTAAG	1 cut(s)	112
AgsI	TTSAA	2 cut(s)	330, 527
AluBI	AGCT	3 cut(s)	201, 543, 691
AluI	AGCT	3 cut(s)	201, 543, 691
Alw21I	GWGCWC	1 cut(s)	761
Alw26I	GTCTC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	455
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	2 cut(s)	339, 527
Asp700I	GAANNNNTTC	1 cut(s)	717
AsuC2I	CCSGG	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	893, 908
BaeGI	GKGCMC	1 cut(s)	433
BanI	GGYRCC	2 cut(s)	175, 724
BbsI	GAAGAC	1 cut(s)	828
Bbv12I	GWGCWC	1 cut(s)	761
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	6 cut(s)	7, 274, 438, 800, 827, 845
BceAI	ACGGC	3 cut(s)	520, 784, 841
BclI	TGATCA	2 cut(s)	388, 898
BcnI	CCSGG	1 cut(s)	434
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	692
BfrI	CTTAAG	1 cut(s)	112
BisI	GCNGC	1 cut(s)	480
BlpI	GCTNAGC	1 cut(s)	795
BlsI	GCNGC	1 cut(s)	481
Bme1390I	CCNGG	1 cut(s)	434
BmiI	GGNNCC	2 cut(s)	177, 726
BmrFI	CCNGG	1 cut(s)	434
BmrI	ACTGGG	1 cut(s)	113
BmsI	GCATC	2 cut(s)	871, 877
BmuI	ACTGGG	1 cut(s)	113
BpiI	GAAGAC	1 cut(s)	828
Bpu1102I	GCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	816
BsaJI	CCNNGG	1 cut(s)	432
BsaWI	WCCGGW	2 cut(s)	135, 727
BsaXI	ACNNNNNCTCC	2 cut(s)	275, 305
Bsc4I	CCNNNNNNNGG	4 cut(s)	210, 433, 440, 806
Bse1I	ACTGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	432
BseGI	GGATG	7 cut(s)	449, 507, 715, 770, 880, 886, 892
BseLI	CCNNNNNNNGG	4 cut(s)	210, 433, 440, 806
BseMII	CTCAG	1 cut(s)	746
BseNI	ACTGG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	433
BseXI	GCAGC	1 cut(s)	491
BshNI	GGYRCC	2 cut(s)	175, 724
BsiHKAI	GWGCWC	1 cut(s)	761
BsiSI	CCGG	4 cut(s)	136, 434, 722, 728
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	4 cut(s)	210, 433, 440, 806
BsmAI	GTCTC	1 cut(s)	278
BsmFI	GGGAC	1 cut(s)	388
BsmI	GAATGC	1 cut(s)	796
Bsp1286I	GDGCHC	2 cut(s)	433, 761
Bsp1407I	TGTACA	3 cut(s)	291, 303, 400
Bsp143I	GATC	3 cut(s)	388, 447, 898
Bsp1720I	GCTNAGC	1 cut(s)	795
BspACI	CCGC	2 cut(s)	511, 884
BspCNI	CTCAG	1 cut(s)	747
BspLI	GGNNCC	2 cut(s)	177, 726
BspPI	GGATC	1 cut(s)	455
BspT107I	GGYRCC	2 cut(s)	175, 724
BspTI	CTTAAG	1 cut(s)	112
BsrGI	TGTACA	3 cut(s)	291, 303, 400
BsrI	ACTGG	1 cut(s)	119
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	3 cut(s)	388, 447, 898
BssNI	GRCGYC	1 cut(s)	816
Bst4CI	ACNGT	8 cut(s)	195, 259, 289, 407, 428, 466, 594, 848
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	816
BstAFI	CTTAAG	1 cut(s)	112
BstAUI	TGTACA	3 cut(s)	291, 303, 400
BstDEI	CTNAG	3 cut(s)	697, 755, 795
BstF5I	GGATG	7 cut(s)	449, 507, 715, 770, 880, 886, 892
BstKTI	GATC	3 cut(s)	391, 450, 901
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	3 cut(s)	388, 447, 898
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstNSI	RCATGY	2 cut(s)	574, 737
BstSCI	CCNGG	1 cut(s)	432
BstSLI	GKGCMC	1 cut(s)	433
BstV1I	GCAGC	1 cut(s)	491
BstV2I	GAAGAC	1 cut(s)	828
BtgZI	GCGATG	3 cut(s)	280, 819, 825
BtsCI	GGATG	7 cut(s)	449, 507, 715, 770, 880, 886, 892
BtsIMutI	CAGTG	6 cut(s)	126, 191, 403, 792, 853, 908
Csp6I	GTAC	5 cut(s)	17, 292, 304, 335, 401
CviAII	CATG	6 cut(s)	103, 226, 301, 571, 734, 927
CviJI	RGCY	6 cut(s)	117, 201, 214, 543, 691, 799
CviKI_1	RGCY	6 cut(s)	117, 201, 214, 543, 691, 799
CviQI	GTAC	5 cut(s)	17, 292, 304, 335, 401
DdeI	CTNAG	3 cut(s)	697, 755, 795
DpnI	GATC	3 cut(s)	390, 449, 900
DpnII	GATC	3 cut(s)	388, 447, 898
DraI	TTTAAA	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco57I	CTGAAG	3 cut(s)	180, 251, 638
FaeI	CATG	6 cut(s)	106, 229, 304, 574, 737, 930
FalI	AAGNNNNNCTT	2 cut(s)	680, 712
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	6 cut(s)	102, 225, 300, 570, 733, 926
FbaI	TGATCA	2 cut(s)	388, 898
FblI	GTMKAC	1 cut(s)	649
Fnu4HI	GCNGC	1 cut(s)	480
FokI	GGATG	7 cut(s)	456, 494, 722, 757, 887, 893, 899
Fsp4HI	GCNGC	1 cut(s)	480
FspBI	CTAG	1 cut(s)	692
GluI	GCNGC	1 cut(s)	480
HapII	CCGG	4 cut(s)	136, 434, 722, 728
Hin1I	GRCGYC	1 cut(s)	816
Hin1II	CATG	6 cut(s)	106, 229, 304, 574, 737, 930
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	3 cut(s)	376, 751, 923
HpaI	GTTAAC	1 cut(s)	262
HpaII	CCGG	4 cut(s)	136, 434, 722, 728
HphI	GGTGA	2 cut(s)	893, 908
Hpy166II	GTNNAC	5 cut(s)	109, 262, 292, 403, 650
Hpy188I	TCNGA	6 cut(s)	272, 443, 657, 756, 775, 919
Hpy8I	GTNNAC	5 cut(s)	109, 262, 292, 403, 650
Hpy99I	CGWCG	1 cut(s)	821
HpyAV	CCTTC	5 cut(s)	109, 155, 277, 728, 914
HpyCH4III	ACNGT	8 cut(s)	195, 259, 289, 407, 428, 466, 594, 848
HpyCH4IV	ACGT	4 cut(s)	128, 453, 744, 816
HpyCH4V	TGCA	3 cut(s)	317, 410, 479
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	3 cut(s)	697, 755, 795
HpySE526I	ACGT	4 cut(s)	128, 453, 744, 816
Hsp92I	GRCGYC	1 cut(s)	816
Hsp92II	CATG	6 cut(s)	106, 229, 304, 574, 737, 930
Ksp22I	TGATCA	2 cut(s)	388, 898
KspAI	GTTAAC	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	388, 447, 898
LmnI	GCTCC	2 cut(s)	206, 730
LpnPI	CCDG	8 cut(s)	132, 149, 170, 411, 447, 488, 735, 741
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	2 cut(s)	871, 877
MaeI	CTAG	1 cut(s)	692
MaeII	ACGT	4 cut(s)	128, 453, 744, 816
MaeIII	GTNAC	1 cut(s)	736
MalI	GATC	3 cut(s)	390, 449, 900
MboI	GATC	3 cut(s)	388, 447, 898
MboII	GAAGA	3 cut(s)	371, 544, 833
MhlI	GDGCHC	2 cut(s)	433, 761
MluCI	AATT	3 cut(s)	93, 339, 527
MlyI	GAGTC	1 cut(s)	370
MnlI	CCTC	1 cut(s)	608
MroXI	GAANNNNTTC	1 cut(s)	717
MseI	TTAA	3 cut(s)	35, 113, 261
MslI	CAYNNNNRTG	1 cut(s)	299
MspCI	CTTAAG	1 cut(s)	112
MspI	CCGG	4 cut(s)	136, 434, 722, 728
MspR9I	CCNGG	1 cut(s)	434
MssI	GTTTAAAC	1 cut(s)	36
Mva1269I	GAATGC	1 cut(s)	796
MwoI	GCNNNNNNNGC	1 cut(s)	479
NciI	CCSGG	1 cut(s)	434
NdeII	GATC	3 cut(s)	388, 447, 898
NlaIII	CATG	6 cut(s)	106, 229, 304, 574, 737, 930
NlaIV	GGNNCC	2 cut(s)	177, 726
NmuCI	GTSAC	1 cut(s)	736
NspI	RCATGY	2 cut(s)	574, 737
PcsI	WCGNNNNNNNCGW	1 cut(s)	771
PctI	GAATGC	1 cut(s)	796
PdmI	GAANNNNTTC	1 cut(s)	717
PfeI	GAWTC	2 cut(s)	751, 923
PflMI	CCANNNNNTGG	1 cut(s)	210
PkrI	GCNGC	1 cut(s)	481
PleI	GAGTC	1 cut(s)	370
PmeI	GTTTAAAC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	370
Psp1406I	AACGTT	3 cut(s)	128, 453, 744
PspN4I	GGNNCC	2 cut(s)	177, 726
PsrI	GAACNNNNNNTAC	2 cut(s)	578, 610
RsaI	GTAC	5 cut(s)	18, 293, 305, 336, 402
RsaNI	GTAC	5 cut(s)	17, 292, 304, 335, 401
RseI	CAYNNNNRTG	1 cut(s)	299
SaqAI	TTAA	3 cut(s)	35, 113, 261
SatI	GCNGC	1 cut(s)	480
Sau3AI	GATC	3 cut(s)	388, 447, 898
SchI	GAGTC	1 cut(s)	370
ScrFI	CCNGG	1 cut(s)	434
SduI	GDGCHC	2 cut(s)	433, 761
SfaNI	GCATC	2 cut(s)	871, 877
SmiMI	CAYNNNNRTG	1 cut(s)	299
SmlI	CTYRAG	2 cut(s)	112, 599
SmoI	CTYRAG	2 cut(s)	112, 599
Sse9I	AATT	3 cut(s)	93, 339, 527
SsiI	CCGC	2 cut(s)	511, 884
SspMI	CTAG	1 cut(s)	692
StyD4I	CCNGG	1 cut(s)	432
TaaI	ACNGT	8 cut(s)	195, 259, 289, 407, 428, 466, 594, 848
TaiI	ACGT	4 cut(s)	131, 456, 747, 819
TaqI	TCGA	2 cut(s)	155, 819
TasI	AATT	3 cut(s)	93, 339, 527
TatI	WGTACW	3 cut(s)	291, 303, 400
TfiI	GAWTC	2 cut(s)	751, 923
Tru1I	TTAA	3 cut(s)	35, 113, 261
Tru9I	TTAA	3 cut(s)	35, 113, 261
TscAI	CASTG	6 cut(s)	126, 198, 410, 792, 853, 915
TseFI	GTSAC	1 cut(s)	736
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	1 cut(s)	736
TspDTI	ATGAA	5 cut(s)	91, 381, 726, 770, 936
TspRI	CASTG	6 cut(s)	126, 198, 410, 792, 853, 915
Van91I	CCANNNNNTGG	1 cut(s)	210
Vha464I	CTTAAG	1 cut(s)	112
XapI	RAATTY	2 cut(s)	339, 527
XceI	RCATGY	2 cut(s)	574, 737
XmiI	GTMKAC	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	717
XspI	CTAG	1 cut(s)	692
ZraI	GACGTC	1 cut(s)	817

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.