Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Reverse (-)

7321904 .. 7324143

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10670.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTACAGTAGCAGACAGTCACCATCCTTTGGCATTTACATTTGGAATTCTAGGAAATCTAATATCAGCCATGGTTTACTTATCCTCAGTGCCGACATTTTATCGAATTTACAGGAAAAAATCAACGGAAGGATTCCACTCGGTGCCATATCTGGTAGCATTGTTCAGTTCCATGCTTTGGTTCTACTATGCGTTGATAAAAACGAATGCTATGATGCTCATCACCATTAACTCATTCGGAAGTTTTGTAGAGATCATCTACATCGTCATGTTCGTTGTTTATGCACCAAAGGAAGCTAGGAAGTTGACAGTGAAACTATTTGGTATTATGAACGTGGGACTTTTCACCATGATCCTTGTCGTTTCTCACTTTCTAGTGGGGAGTGCATACCGGATCCCAATTCTTGGATGGATTAATGTTGCCATTTCTACCAGTGTTTTTGTTGCGCCCTTAAGCATTGTGGCACAGGTTATCCGAACAAGAAGTGTGGAATTTATGCCATTTGGCTTGTCATTTTTCCTCACATTGAGTGCCGTTATGTGGTTTGCATATGGATTGCTCATCAAGGACATATGCGTTGTAATTCCAAACGTTCTGGGTTTTGTGTTGGGACTGCTTCAGATTCTGCTGTATGGGATATACCGAAACCGAGAACAGGTGATAATAGACGATCATGAGAAAAAGCTACCGGCTGCTACACATGAGAACGTGAAAAACATTGTGATCATAGCCACATTAGCAACTTCCGAGGTTCATCCGGTGGATGATCAACCGAACAATCGCAACAATGACACCGACGTTAATAATAACGCCGCCATTAGAGACGCAAAGGAGCATGAACAAACGGATGATCATCGTCATGTGGAAAATGCTTCCGTCGAGCTTCAACCTAATGAAACCTCATCTGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

306

Amino Acids

34.19

Weight (kDa)

6.55

Isoelectric Point (pI)

27.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	3 cut(s)	31, 180, 407
AciI	CCGC	1 cut(s)	816
AclI	AACGTT	1 cut(s)	594
AclWI	GGATC	3 cut(s)	349, 391, 404
AcsI	RAATTY	3 cut(s)	48, 108, 494
AcuI	CTGAAG	1 cut(s)	605
AdeI	CACNNNGTG	1 cut(s)	145
AfiI	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
AflII	CTTAAG	1 cut(s)	454
AgsI	TTSAA	1 cut(s)	890
AluBI	AGCT	3 cut(s)	299, 688, 886
AluI	AGCT	3 cut(s)	299, 688, 886
Alw26I	GTCTC	1 cut(s)	819
AlwI	GGATC	3 cut(s)	349, 391, 404
AlwNI	CAGNNNCTG	1 cut(s)	628
ApeKI	GCWGC	1 cut(s)	695
ApoI	RAATTY	3 cut(s)	48, 108, 494
AseI	ATTAAT	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	451
AsuHPI	GGTGA	4 cut(s)	14, 217, 340, 673
BamHI	GGATCC	1 cut(s)	396
BanI	GGYRCC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	2 cut(s)	33, 405
BceAI	ACGGC	1 cut(s)	521
BclI	TGATCA	3 cut(s)	726, 769, 853
BcoDI	GTCTC	1 cut(s)	819
BfaI	CTAG	3 cut(s)	53, 300, 377
BfmI	CTRYAG	2 cut(s)	6, 909
BfrI	CTTAAG	1 cut(s)	454
BisI	GCNGC	2 cut(s)	696, 816
BlsI	GCNGC	2 cut(s)	697, 817
BmiI	GGNNCC	2 cut(s)	147, 398
BmsI	GCATC	1 cut(s)	207
BsaBI	GATNNNNATC	2 cut(s)	221, 855
BsaJI	CCNNGG	2 cut(s)	72, 750
BsaWI	WCCGGW	2 cut(s)	393, 760
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
Bse118I	RCCGGY	1 cut(s)	691
Bse1I	ACTGG	1 cut(s)	435
Bse8I	GATNNNNATC	2 cut(s)	221, 855
BseDI	CCNNGG	2 cut(s)	72, 750
BseGI	GGATG	5 cut(s)	25, 416, 757, 772, 856
BseJI	GATNNNNATC	2 cut(s)	221, 855
BseLI	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
BseMII	CTCAG	1 cut(s)	102
BseNI	ACTGG	1 cut(s)	435
BseXI	GCAGC	1 cut(s)	682
BshNI	GGYRCC	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	394, 692, 761
BslFI	GGGAC	2 cut(s)	354, 627
BslI	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
BsmAI	GTCTC	1 cut(s)	819
BsmBI	CGTCTC	1 cut(s)	819
BsmFI	GGGAC	2 cut(s)	354, 627
BsmI	GAATGC	1 cut(s)	214
Bsp143I	GATC	7 cut(s)	255, 354, 396, 673, 726, 769, 853
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	816
BspCNI	CTCAG	1 cut(s)	101
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	2 cut(s)	147, 398
BspMAI	CTGCAG	1 cut(s)	913
BspPI	GGATC	3 cut(s)	349, 391, 404
BspT107I	GGYRCC	1 cut(s)	145
BspTI	CTTAAG	1 cut(s)	454
BsrFI	RCCGGY	1 cut(s)	691
BsrI	ACTGG	1 cut(s)	435
BssAI	RCCGGY	1 cut(s)	691
BssECI	CCNNGG	2 cut(s)	72, 750
BssMI	GATC	7 cut(s)	255, 354, 396, 673, 726, 769, 853
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	3 cut(s)	10, 20, 313
BstAFI	CTTAAG	1 cut(s)	454
BstDEI	CTNAG	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	5 cut(s)	25, 416, 757, 772, 856
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	7 cut(s)	258, 357, 399, 676, 729, 772, 856
BstMAI	GTCTC	1 cut(s)	819
BstMBI	GATC	7 cut(s)	255, 354, 396, 673, 726, 769, 853
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 740
BstSFI	CTRYAG	2 cut(s)	6, 909
BstV1I	GCAGC	1 cut(s)	682
BstX2I	RGATCY	1 cut(s)	396
BstYI	RGATCY	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	5 cut(s)	25, 416, 757, 772, 856
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	4 cut(s)	96, 318, 442, 918
CaiI	CAGNNNCTG	1 cut(s)	628
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	691
CseI	GACGC	1 cut(s)	836
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	8 cut(s)	73, 175, 271, 352, 677, 704, 839, 863
CviJI	RGCY	8 cut(s)	5, 71, 299, 510, 688, 695, 734, 886
CviKI_1	RGCY	8 cut(s)	5, 71, 299, 510, 688, 695, 734, 886
DdeI	CTNAG	1 cut(s)	88
DpnI	GATC	7 cut(s)	257, 356, 398, 675, 728, 771, 855
DpnII	GATC	7 cut(s)	255, 354, 396, 673, 726, 769, 853
DraIII	CACNNNGTG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	605
EcoRI	GAATTC	1 cut(s)	48
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	819
FaeI	CATG	8 cut(s)	76, 178, 274, 355, 680, 707, 842, 866
FaqI	GGGAC	2 cut(s)	354, 627
FatI	CATG	8 cut(s)	72, 174, 270, 351, 676, 703, 838, 862
FauNDI	CATATG	2 cut(s)	553, 575
FbaI	TGATCA	3 cut(s)	726, 769, 853
Fnu4HI	GCNGC	2 cut(s)	696, 816
FokI	GGATG	5 cut(s)	12, 423, 744, 779, 863
Fsp4HI	GCNGC	2 cut(s)	696, 816
FspBI	CTAG	3 cut(s)	53, 300, 377
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	2 cut(s)	696, 816
HapII	CCGG	3 cut(s)	394, 692, 761
HgaI	GACGC	1 cut(s)	836
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	8 cut(s)	76, 178, 274, 355, 680, 707, 842, 866
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HinfI	GANTC	2 cut(s)	135, 625
HpaII	CCGG	3 cut(s)	394, 692, 761
HphI	GGTGA	4 cut(s)	14, 217, 340, 673
Hpy166II	GTNNAC	2 cut(s)	79, 309
Hpy188I	TCNGA	4 cut(s)	242, 479, 624, 751
Hpy188III	TCNNGA	1 cut(s)	677
Hpy8I	GTNNAC	2 cut(s)	79, 309
Hpy99I	CGWCG	2 cut(s)	803, 884
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	3 cut(s)	10, 20, 313
HpyCH4IV	ACGT	4 cut(s)	336, 594, 711, 801
HpyCH4V	TGCA	4 cut(s)	287, 389, 551, 911
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 740
HpyF3I	CTNAG	1 cut(s)	88
HpySE526I	ACGT	4 cut(s)	336, 594, 711, 801
Hsp92II	CATG	8 cut(s)	76, 178, 274, 355, 680, 707, 842, 866
HspAI	GCGC	1 cut(s)	449
Ksp22I	TGATCA	3 cut(s)	726, 769, 853
Kzo9I	GATC	7 cut(s)	255, 354, 396, 673, 726, 769, 853
LmnI	GCTCC	1 cut(s)	835
LpnPI	CCDG	9 cut(s)	100, 140, 407, 448, 455, 584, 644, 705, 774
Lsp1109I	GCAGC	1 cut(s)	682
LweI	GCATC	1 cut(s)	207
MaeI	CTAG	3 cut(s)	53, 300, 377
MaeII	ACGT	4 cut(s)	336, 594, 711, 801
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	7 cut(s)	257, 356, 398, 675, 728, 771, 855
MboI	GATC	7 cut(s)	255, 354, 396, 673, 726, 769, 853
MflI	RGATCY	1 cut(s)	396
MluCI	AATT	5 cut(s)	48, 108, 402, 494, 585
MnlI	CCTC	4 cut(s)	97, 533, 745, 913
MseI	TTAA	4 cut(s)	231, 417, 455, 804
MslI	CAYNNNNRTG	2 cut(s)	269, 861
MspCI	CTTAAG	1 cut(s)	454
MspI	CCGG	3 cut(s)	394, 692, 761
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	11, 740
NcoI	CCATGG	1 cut(s)	72
NdeI	CATATG	2 cut(s)	553, 575
NdeII	GATC	7 cut(s)	255, 354, 396, 673, 726, 769, 853
NlaIII	CATG	8 cut(s)	76, 178, 274, 355, 680, 707, 842, 866
NlaIV	GGNNCC	2 cut(s)	147, 398
NmuCI	GTSAC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	676
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	135, 625
PflMI	CCANNNNNTGG	3 cut(s)	31, 180, 407
PkrI	GCNGC	2 cut(s)	697, 817
PshBI	ATTAAT	1 cut(s)	417
Psp1406I	AACGTT	1 cut(s)	594
PspN4I	GGNNCC	2 cut(s)	147, 398
PstI	CTGCAG	1 cut(s)	913
PstNI	CAGNNNCTG	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	396
RseI	CAYNNNNRTG	2 cut(s)	269, 861
SaqAI	TTAA	4 cut(s)	231, 417, 455, 804
SatI	GCNGC	2 cut(s)	696, 816
Sau3AI	GATC	7 cut(s)	255, 354, 396, 673, 726, 769, 853
SfaNI	GCATC	1 cut(s)	207
SfcI	CTRYAG	2 cut(s)	6, 909
SmiMI	CAYNNNNRTG	2 cut(s)	269, 861
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	5 cut(s)	48, 108, 402, 494, 585
SsiI	CCGC	1 cut(s)	816
SspMI	CTAG	3 cut(s)	53, 300, 377
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	3 cut(s)	10, 20, 313
TaiI	ACGT	4 cut(s)	339, 597, 714, 804
TaqI	TCGA	2 cut(s)	106, 882
TasI	AATT	5 cut(s)	48, 108, 402, 494, 585
TauI	GCSGC	1 cut(s)	818
TfiI	GAWTC	2 cut(s)	135, 625
Tru1I	TTAA	4 cut(s)	231, 417, 455, 804
Tru9I	TTAA	4 cut(s)	231, 417, 455, 804
TscAI	CASTG	4 cut(s)	96, 318, 442, 918
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	695
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	4 cut(s)	347, 746, 855, 912
TspGWI	ACGGA	3 cut(s)	143, 863, 868
TspRI	CASTG	4 cut(s)	96, 318, 442, 918
Van91I	CCANNNNNTGG	3 cut(s)	31, 180, 407
Vha464I	CTTAAG	1 cut(s)	454
VspI	ATTAAT	1 cut(s)	417
XapI	RAATTY	3 cut(s)	48, 108, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	408
XspI	CTAG	3 cut(s)	53, 300, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.