Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Reverse (-)

46888356 .. 46890474

Gene Structure 2119 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009117

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGGCGCAGTAGCGGACAGTCAACATCCTTGGGCATTTGCATTTGGCATTCTAGGTAATCTAATTTCAATCATGGTTTACTTGGCCCCAGTACCAACATTTTACCGGATTTACATAGGGAAATCGACTGAAAGTTTCCAATCGGTGCCATATCTGGTAGAACTGTTTAGTTCCACGCTTTGGGTCTACTATGCCGTACTGAAGCAAAATGCTGTGCTATTCATCACAATTAACTCCTTCGGAAGTGTGATGGAGACTTTGTACATCGCCATGTACATTGTTTATGCAACAAACGCTTCAAGGAAATTCACTATCAAGTTATTCGGGTTTATGAACTTGGGACTCTTTTCCTTGGTCATTGTCCTTTCACACTATGCATTTCATACTCAATACCGTGTCCTGGTTCTCGGATGGATCAACATTGCCGTTAACGTTTGTTCTTTTGCAGCGCCCTTGACTATTGTGGCACAGGTGATCCGCACAAAAAGCGTTGAATTTATGCCGTTCAGCTTATCATTCTTCCTTACATTGAGTGGCGTGTTGTGGTTTGCGTATGGACTCGTCGTCAAGGACATATTCATAGCAGTCCCTGCGACACCTGCCGAGAGCTGCCGACCCCCTGCCGAGCATCTGTCGACAGCCCTGCCGACACCTGCCGACACCTGCCGAGCACCTGCCGATAGCTGCCCAGCACCTGCCGACACCTGCCGAGACCTGCCGACACCTGCCGATAGCTGCCCAGCACCTGCCGACACCTGCCGAGCACCTGCCGATAGCTGCCCAGCACCTGCCGACACCTGCCGAGCATCTGCCGACACCTGCCGACACCTGCCGAGCACCTGCCGACACCTGCCGAGCACCTGCCGAGACCTGTCGACACCTGCCGAGCACCTGCTGATAGCTGCCCAGCACCTGCCGACACCTGCCGAGGCCCCTGCCGACAGTCCTGCACACACCTGCCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

322

Amino Acids

34.85

Weight (kDa)

6.48

Isoelectric Point (pI)

48.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	14 - 98	6.1e-22	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 198	6.1e-17	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	3 cut(s)	186, 635, 875
AciI	CCGC	2 cut(s)	14, 478
AclI	AACGTT	1 cut(s)	432
AclWI	GGATC	2 cut(s)	422, 469
AcsI	RAATTY	2 cut(s)	305, 494
AcuI	CTGAAG	1 cut(s)	221
AfaI	GTAC	4 cut(s)	93, 198, 263, 275
AfiI	CCNNNNNNNGG	2 cut(s)	180, 400
AgsI	TTSAA	3 cut(s)	69, 300, 494
AhdI	GACNNNNNGTC	1 cut(s)	563
AjnI	CCWGG	1 cut(s)	399
AluBI	AGCT	6 cut(s)	510, 609, 684, 735, 777, 902
AluI	AGCT	6 cut(s)	510, 609, 684, 735, 777, 902
Alw21I	GWGCWC	5 cut(s)	673, 766, 839, 860, 891
Alw26I	GTCTC	3 cut(s)	248, 705, 861
AlwI	GGATC	2 cut(s)	422, 469
AlwNI	CAGNNNCTG	5 cut(s)	590, 695, 746, 788, 913
AoxI	GGCC	2 cut(s)	84, 930
ApeKI	GCWGC	6 cut(s)	446, 609, 684, 735, 777, 902
ApoI	RAATTY	2 cut(s)	305, 494
AspLEI	GCGC	2 cut(s)	8, 451
AspS9I	GGNCC	2 cut(s)	85, 931
AsuHPI	GGTGA	1 cut(s)	484
BanI	GGYRCC	1 cut(s)	145
Bbv12I	GWGCWC	5 cut(s)	673, 766, 839, 860, 891
BbvI	GCAGC	6 cut(s)	458, 596, 671, 722, 764, 889
BccI	CCATC	2 cut(s)	244, 405
BceAI	ACGGC	3 cut(s)	179, 410, 487
BcgI	CGANNNNNNTGC	6 cut(s)	625, 659, 917, 929, 951, 963
BciT130I	CCWGG	1 cut(s)	401
BcoDI	GTCTC	3 cut(s)	248, 705, 861
BfaI	CTAG	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	452
BisI	GCNGC	6 cut(s)	447, 610, 685, 736, 778, 903
BlsI	GCNGC	6 cut(s)	448, 611, 686, 737, 779, 904
Bme1390I	CCNGG	1 cut(s)	401
BmeRI	GACNNNNNGTC	1 cut(s)	563
BmgT120I	GGNCC	2 cut(s)	85, 931
BmiI	GGNNCC	3 cut(s)	87, 147, 933
BmrFI	CCNGG	1 cut(s)	401
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	637, 815
BmuI	ACTGGG	1 cut(s)	83
BsaI	GGTCTC	2 cut(s)	705, 861
BsaJI	CCNNGG	3 cut(s)	29, 351, 927
BsaWI	WCCGGW	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 400
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	401
BseDI	CCNNGG	3 cut(s)	29, 351, 927
BseGI	GGATG	2 cut(s)	25, 416
BseLI	CCNNNNNNNGG	2 cut(s)	180, 400
BseMI	GCAATG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	89
BseXI	GCAGC	6 cut(s)	458, 596, 671, 722, 764, 889
BseYI	CCCAGC	4 cut(s)	688, 739, 781, 906
BsgI	GTGCAG	1 cut(s)	933
BshFI	GGCC	2 cut(s)	86, 932
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	5 cut(s)	673, 766, 839, 860, 891
BsiSI	CCGG	1 cut(s)	106
BslFI	GGGAC	2 cut(s)	354, 572
BslI	CCNNNNNNNGG	2 cut(s)	180, 400
BsmAI	GTCTC	3 cut(s)	248, 705, 861
BsmFI	GGGAC	2 cut(s)	354, 572
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	2 cut(s)	86, 932
Bso31I	GGTCTC	2 cut(s)	705, 861
Bsp1286I	GDGCHC	5 cut(s)	673, 766, 839, 860, 891
Bsp1407I	TGTACA	2 cut(s)	261, 273
Bsp143I	GATC	2 cut(s)	414, 474
BspACI	CCGC	2 cut(s)	14, 478
BspANI	GGCC	2 cut(s)	86, 932
BspLI	GGNNCC	3 cut(s)	87, 147, 933
BspPI	GGATC	2 cut(s)	422, 469
BspT107I	GGYRCC	1 cut(s)	145
BspTNI	GGTCTC	2 cut(s)	705, 861
BsrDI	GCAATG	1 cut(s)	420
BsrGI	TGTACA	2 cut(s)	261, 273
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	3 cut(s)	29, 351, 927
BssMI	GATC	2 cut(s)	414, 474
BssT1I	CCWWGG	2 cut(s)	29, 351
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	4 cut(s)	20, 165, 395, 944
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstAUI	TGTACA	2 cut(s)	261, 273
BstF5I	GGATG	2 cut(s)	25, 416
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	2 cut(s)	8, 451
BstKTI	GATC	2 cut(s)	417, 477
BstMAI	GTCTC	3 cut(s)	248, 705, 861
BstMBI	GATC	2 cut(s)	414, 474
BstMWI	GCNNNNNNNGC	4 cut(s)	293, 486, 590, 599
BstNI	CCWGG	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	399
BstV1I	GCAGC	6 cut(s)	458, 596, 671, 722, 764, 889
BsuRI	GGCC	2 cut(s)	86, 932
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	2 cut(s)	25, 416
CaiI	CAGNNNCTG	5 cut(s)	590, 695, 746, 788, 913
CfoI	GCGC	2 cut(s)	8, 451
Cfr13I	GGNCC	2 cut(s)	85, 931
Csp6I	GTAC	4 cut(s)	92, 197, 262, 274
CviAII	CATG	2 cut(s)	73, 271
CviJI	RGCY	9 cut(s)	86, 510, 609, 641, 684, 735, 777, 902, 932
CviKI_1	RGCY	9 cut(s)	86, 510, 609, 641, 684, 735, 777, 902, 932
CviQI	GTAC	4 cut(s)	92, 197, 262, 274
DpnI	GATC	2 cut(s)	416, 476
DpnII	GATC	2 cut(s)	414, 474
DriI	GACNNNNNGTC	1 cut(s)	563
Eam1105I	GACNNNNNGTC	1 cut(s)	563
Eco130I	CCWWGG	2 cut(s)	29, 351
Eco31I	GGTCTC	2 cut(s)	705, 861
Eco57I	CTGAAG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	931
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	29, 351
EcoT22I	ATGCAT	1 cut(s)	379
ErhI	CCWWGG	2 cut(s)	29, 351
FaeI	CATG	2 cut(s)	76, 274
FaqI	GGGAC	2 cut(s)	354, 572
FatI	CATG	2 cut(s)	72, 270
FblI	GTMKAC	3 cut(s)	186, 635, 875
Fnu4HI	GCNGC	6 cut(s)	447, 610, 685, 736, 778, 903
FokI	GGATG	2 cut(s)	12, 423
Fsp4HI	GCNGC	6 cut(s)	447, 610, 685, 736, 778, 903
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	2 cut(s)	7, 450
GluI	GCNGC	6 cut(s)	447, 610, 685, 736, 778, 903
GsaI	CCCAGC	4 cut(s)	692, 743, 785, 910
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	2 cut(s)	86, 932
HapII	CCGG	1 cut(s)	106
HhaI	GCGC	2 cut(s)	8, 451
Hin1II	CATG	2 cut(s)	76, 274
Hin6I	GCGC	2 cut(s)	6, 449
HinP1I	GCGC	2 cut(s)	6, 449
HincII	GTYRAC	4 cut(s)	23, 430, 636, 876
HindII	GTYRAC	4 cut(s)	23, 430, 636, 876
HinfI	GANTC	2 cut(s)	342, 558
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	106
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	6 cut(s)	23, 79, 187, 430, 636, 876
Hpy188I	TCNGA	2 cut(s)	242, 410
Hpy8I	GTNNAC	6 cut(s)	23, 79, 187, 430, 636, 876
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	4 cut(s)	20, 165, 395, 944
HpyCH4IV	ACGT	1 cut(s)	432
HpyCH4V	TGCA	5 cut(s)	41, 287, 377, 446, 950
HpyF10VI	GCNNNNNNNGC	4 cut(s)	293, 486, 590, 599
HpySE526I	ACGT	1 cut(s)	432
Hsp92II	CATG	2 cut(s)	76, 274
HspAI	GCGC	2 cut(s)	6, 449
KspAI	GTTAAC	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	414, 474
Lsp1109I	GCAGC	6 cut(s)	458, 596, 671, 722, 764, 889
LweI	GCATC	2 cut(s)	637, 815
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	1 cut(s)	432
MalI	GATC	2 cut(s)	416, 476
MboI	GATC	2 cut(s)	414, 474
MboII	GAAGA	1 cut(s)	511
MhlI	GDGCHC	5 cut(s)	673, 766, 839, 860, 891
MluCI	AATT	4 cut(s)	63, 228, 305, 494
MlyI	GAGTC	2 cut(s)	336, 552
MnlI	CCTC	1 cut(s)	922
Mph1103I	ATGCAT	1 cut(s)	379
MseI	TTAA	2 cut(s)	231, 429
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	1 cut(s)	106
MspR9I	CCNGG	1 cut(s)	401
Mva1269I	GAATGC	1 cut(s)	48
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	4 cut(s)	293, 486, 590, 599
NdeII	GATC	2 cut(s)	414, 474
NlaIII	CATG	2 cut(s)	76, 274
NlaIV	GGNNCC	3 cut(s)	87, 147, 933
NsiI	ATGCAT	1 cut(s)	379
PctI	GAATGC	1 cut(s)	48
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	6 cut(s)	448, 611, 686, 737, 779, 904
PleI	GAGTC	2 cut(s)	336, 552
PpsI	GAGTC	2 cut(s)	336, 552
Psp1406I	AACGTT	1 cut(s)	432
Psp6I	CCWGG	1 cut(s)	399
PspFI	CCCAGC	4 cut(s)	688, 739, 781, 906
PspGI	CCWGG	1 cut(s)	399
PspN4I	GGNNCC	3 cut(s)	87, 147, 933
PspPI	GGNCC	2 cut(s)	85, 931
PstNI	CAGNNNCTG	5 cut(s)	590, 695, 746, 788, 913
RsaI	GTAC	4 cut(s)	93, 198, 263, 275
RsaNI	GTAC	4 cut(s)	92, 197, 262, 274
RseI	CAYNNNNRTG	1 cut(s)	269
SalI	GTCGAC	2 cut(s)	634, 874
SaqAI	TTAA	2 cut(s)	231, 429
SatI	GCNGC	6 cut(s)	447, 610, 685, 736, 778, 903
Sau3AI	GATC	2 cut(s)	414, 474
Sau96I	GGNCC	2 cut(s)	85, 931
SchI	GAGTC	2 cut(s)	336, 552
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	5 cut(s)	673, 766, 839, 860, 891
SfaNI	GCATC	2 cut(s)	637, 815
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	4 cut(s)	63, 228, 305, 494
SsiI	CCGC	2 cut(s)	14, 478
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	2 cut(s)	29, 351
TaaI	ACNGT	4 cut(s)	20, 165, 395, 944
TaiI	ACGT	1 cut(s)	435
TaqI	TCGA	3 cut(s)	125, 635, 875
TasI	AATT	4 cut(s)	63, 228, 305, 494
TatI	WGTACW	2 cut(s)	261, 273
Tru1I	TTAA	2 cut(s)	231, 429
Tru9I	TTAA	2 cut(s)	231, 429
TseI	GCWGC	6 cut(s)	446, 609, 684, 735, 777, 902
TspDTI	ATGAA	4 cut(s)	211, 347, 371, 568
Van91I	CCANNNNNTGG	1 cut(s)	180
XapI	RAATTY	2 cut(s)	305, 494
XmiI	GTMKAC	3 cut(s)	186, 635, 875
XspI	CTAG	1 cut(s)	53
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.