Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Reverse (-)

9081893 .. 9084706

Gene Structure 2814 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1125300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCTATAGTAGCAGACAGTCACCATCCTTTGGCATTTACATTTGGAATTCTAGGAAATCTAATCTCGACCATGGTTTACTTATCCCCAGTGCCGACATTTTATCGAATTTACAGGAAAAAATCAACAGAAGGATTTCACTCGGTGCCATATCTGGTAGCATTGTTCAGTTCCATGCTTTGGCTCTACTATGCGTTGGTAAAAAAGAATGCTATGATGCTCATCACCATTAACTCATTCGGAAGTTTTGTAGAGATCATCTACATCGTCATGTTCGTTGTTTATGCACCAAAGGAAGCTAGGAAGTTGACAGTGAAACTATTTGGTATTATGAACGTGGGACTTTTCACCATGATCCTTGTCGTTTCTCACTTTCTAGTGGGGAGTGCATACCGGGTCCCAATTCTTGGATGGATTAATGTTGCCATTTCTACCAGTGTTTTTGTTGCGCCCTTAAGCATTGTGGCACAGGTTATCCGAACAAGAAGTGTCGAATTTATGCCATTTGGCTTGTCATTTTTCCTCACATTGAGCGCCGTTATCTGGTTTGCATATGGATATCTCCTCAAGGACATATGTGTAGCAATTCCAAACTTTCTGGGTTTTGTGTTGGGGCTGCTTCAGATGCTGCTGTATGGGATATACCGAAACCGAGAACAGGTGATAATAGACGATCATGAGAAAAAGCTACCGGGTGCTATACATGAGGACGTGAAAAACATTGTGATCATAGCCACATTAGCAGCTTCCGAGGTTCATCCGGTGGATGATCAACCGAACAATCGCAACAATGACACCGACGTTAATAATAACGCCGCCGTTAGAGACGCAAAGGAGCAGGAACAAACGGATGATCATCGTCATGTGGAAAATGCTTCCGTCGAGCTTCAACCTAATGAAACATCATATGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

306

Amino Acids

34.3

Weight (kDa)

6.5

Isoelectric Point (pI)

30.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	14 - 99	5.5e-26	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 219	2.6e-24	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	3 cut(s)	31, 180, 407
AciI	CCGC	1 cut(s)	816
AclWI	GGATC	1 cut(s)	349
AcsI	RAATTY	3 cut(s)	48, 108, 494
AcuI	CTGAAG	1 cut(s)	605
AdeI	CACNNNGTG	1 cut(s)	145
AfiI	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
AflII	CTTAAG	1 cut(s)	454
AgsI	TTSAA	1 cut(s)	890
AjiI	CACGTC	1 cut(s)	712
AluBI	AGCT	4 cut(s)	299, 688, 746, 886
AluI	AGCT	4 cut(s)	299, 688, 746, 886
Alw26I	GTCTC	1 cut(s)	819
AlwI	GGATC	1 cut(s)	349
AlwNI	CAGNNNCTG	1 cut(s)	628
ApeKI	GCWGC	3 cut(s)	616, 628, 743
ApoI	RAATTY	3 cut(s)	48, 108, 494
AseI	ATTAAT	1 cut(s)	417
Asp700I	GAANNNNTTC	1 cut(s)	135
AspLEI	GCGC	2 cut(s)	451, 536
AspS9I	GGNCC	1 cut(s)	397
AsuC2I	CCSGG	2 cut(s)	395, 693
AsuHPI	GGTGA	4 cut(s)	14, 217, 340, 673
AvaII	GGWCC	1 cut(s)	397
BanI	GGYRCC	1 cut(s)	145
BbvI	GCAGC	3 cut(s)	603, 615, 755
BccI	CCATC	2 cut(s)	33, 405
BceAI	ACGGC	2 cut(s)	521, 803
BclI	TGATCA	3 cut(s)	726, 769, 853
BcnI	CCSGG	2 cut(s)	395, 693
BcoDI	GTCTC	1 cut(s)	819
BfaI	CTAG	3 cut(s)	53, 300, 377
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	537
BfrI	CTTAAG	1 cut(s)	454
BisI	GCNGC	4 cut(s)	617, 629, 744, 816
BlsI	GCNGC	4 cut(s)	618, 630, 745, 817
Bme1390I	CCNGG	2 cut(s)	395, 693
Bme18I	GGWCC	1 cut(s)	397
BmgBI	CACGTC	1 cut(s)	712
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	3 cut(s)	147, 398, 399
BmrFI	CCNGG	2 cut(s)	395, 693
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	207, 615
BmuI	ACTGGG	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	2 cut(s)	395, 693
BsaBI	GATNNNNATC	2 cut(s)	221, 855
BsaJI	CCNNGG	2 cut(s)	72, 750
BsaWI	WCCGGW	1 cut(s)	760
Bsc4I	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
Bse1I	ACTGG	2 cut(s)	89, 435
Bse8I	GATNNNNATC	2 cut(s)	221, 855
BseDI	CCNNGG	2 cut(s)	72, 750
BseGI	GGATG	5 cut(s)	25, 416, 757, 772, 856
BseJI	GATNNNNATC	2 cut(s)	221, 855
BseLI	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
BseNI	ACTGG	2 cut(s)	89, 435
BseRI	GAGGAG	1 cut(s)	554
BseXI	GCAGC	3 cut(s)	603, 615, 755
BshNI	GGYRCC	1 cut(s)	145
BsiSI	CCGG	3 cut(s)	394, 692, 761
BslFI	GGGAC	2 cut(s)	354, 383
BslI	CCNNNNNNNGG	5 cut(s)	31, 180, 407, 543, 658
BsmAI	GTCTC	1 cut(s)	819
BsmBI	CGTCTC	1 cut(s)	819
BsmFI	GGGAC	2 cut(s)	354, 383
BsmI	GAATGC	1 cut(s)	214
Bsp143I	GATC	6 cut(s)	255, 354, 673, 726, 769, 853
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	816
BspHI	TCATGA	1 cut(s)	676
BspLI	GGNNCC	3 cut(s)	147, 398, 399
BspPI	GGATC	1 cut(s)	349
BspT107I	GGYRCC	1 cut(s)	145
BspTI	CTTAAG	1 cut(s)	454
BsrI	ACTGG	2 cut(s)	89, 435
BssECI	CCNNGG	2 cut(s)	72, 750
BssMI	GATC	6 cut(s)	255, 354, 673, 726, 769, 853
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	20, 313
BstAFI	CTTAAG	1 cut(s)	454
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	5 cut(s)	25, 416, 757, 772, 856
BstH2I	RGCGCY	1 cut(s)	537
BstHHI	GCGC	2 cut(s)	451, 536
BstKTI	GATC	6 cut(s)	258, 357, 676, 729, 772, 856
BstMAI	GTCTC	1 cut(s)	819
BstMBI	GATC	6 cut(s)	255, 354, 673, 726, 769, 853
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 625, 740
BstSCI	CCNGG	2 cut(s)	393, 691
BstSFI	CTRYAG	1 cut(s)	6
BstV1I	GCAGC	3 cut(s)	603, 615, 755
BtgI	CCRYGG	1 cut(s)	72
BtrI	CACGTC	1 cut(s)	712
BtsCI	GGATG	5 cut(s)	25, 416, 757, 772, 856
BtsI	GCAGTG	1 cut(s)	918
BtsIMutI	CAGTG	4 cut(s)	96, 318, 442, 918
CaiI	CAGNNNCTG	1 cut(s)	628
CciI	TCATGA	1 cut(s)	676
CfoI	GCGC	2 cut(s)	451, 536
Cfr13I	GGNCC	1 cut(s)	397
CseI	GACGC	1 cut(s)	836
CviAII	CATG	7 cut(s)	73, 175, 271, 352, 677, 704, 863
CviJI	RGCY	9 cut(s)	5, 184, 299, 510, 616, 688, 734, 746, 886
CviKI_1	RGCY	9 cut(s)	5, 184, 299, 510, 616, 688, 734, 746, 886
DpnI	GATC	6 cut(s)	257, 356, 675, 728, 771, 855
DpnII	GATC	6 cut(s)	255, 354, 673, 726, 769, 853
DraIII	CACNNNGTG	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	72
Eco32I	GATATC	1 cut(s)	560
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	605
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	48
EcoRV	GATATC	1 cut(s)	560
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	819
FaeI	CATG	7 cut(s)	76, 178, 274, 355, 680, 707, 866
FaqI	GGGAC	2 cut(s)	354, 383
FatI	CATG	7 cut(s)	72, 174, 270, 351, 676, 703, 862
FauNDI	CATATG	3 cut(s)	553, 575, 907
FbaI	TGATCA	3 cut(s)	726, 769, 853
Fnu4HI	GCNGC	4 cut(s)	617, 629, 744, 816
FokI	GGATG	5 cut(s)	12, 423, 744, 779, 863
Fsp4HI	GCNGC	4 cut(s)	617, 629, 744, 816
FspBI	CTAG	3 cut(s)	53, 300, 377
GlaI	GCGC	2 cut(s)	450, 535
GluI	GCNGC	4 cut(s)	617, 629, 744, 816
HaeII	RGCGCY	1 cut(s)	537
HapII	CCGG	3 cut(s)	394, 692, 761
HgaI	GACGC	1 cut(s)	836
HhaI	GCGC	2 cut(s)	451, 536
Hin1II	CATG	7 cut(s)	76, 178, 274, 355, 680, 707, 866
Hin6I	GCGC	2 cut(s)	449, 534
HinP1I	GCGC	2 cut(s)	449, 534
HincII	GTYRAC	1 cut(s)	309
HindII	GTYRAC	1 cut(s)	309
HpaII	CCGG	3 cut(s)	394, 692, 761
HphI	GGTGA	4 cut(s)	14, 217, 340, 673
Hpy166II	GTNNAC	2 cut(s)	79, 309
Hpy188I	TCNGA	4 cut(s)	242, 479, 624, 751
Hpy188III	TCNNGA	2 cut(s)	67, 677
Hpy8I	GTNNAC	2 cut(s)	79, 309
Hpy99I	CGWCG	2 cut(s)	803, 884
HpyAV	CCTTC	1 cut(s)	125
HpyCH4III	ACNGT	2 cut(s)	20, 313
HpyCH4IV	ACGT	3 cut(s)	336, 711, 801
HpyCH4V	TGCA	4 cut(s)	287, 389, 551, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 625, 740
HpySE526I	ACGT	3 cut(s)	336, 711, 801
Hsp92II	CATG	7 cut(s)	76, 178, 274, 355, 680, 707, 866
HspAI	GCGC	2 cut(s)	449, 534
KflI	GGGWCCC	1 cut(s)	397
Ksp22I	TGATCA	3 cut(s)	726, 769, 853
Kzo9I	GATC	6 cut(s)	255, 354, 673, 726, 769, 853
LmnI	GCTCC	1 cut(s)	835
Lsp1109I	GCAGC	3 cut(s)	603, 615, 755
LweI	GCATC	2 cut(s)	207, 615
MaeI	CTAG	3 cut(s)	53, 300, 377
MaeII	ACGT	3 cut(s)	336, 711, 801
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	6 cut(s)	257, 356, 675, 728, 771, 855
MboI	GATC	6 cut(s)	255, 354, 673, 726, 769, 853
MluCI	AATT	5 cut(s)	48, 108, 402, 494, 585
MnlI	CCTC	4 cut(s)	533, 575, 700, 745
MroXI	GAANNNNTTC	1 cut(s)	135
MseI	TTAA	4 cut(s)	231, 417, 455, 804
MslI	CAYNNNNRTG	2 cut(s)	269, 861
MspCI	CTTAAG	1 cut(s)	454
MspI	CCGG	3 cut(s)	394, 692, 761
MspR9I	CCNGG	2 cut(s)	395, 693
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	3 cut(s)	11, 625, 740
NciI	CCSGG	2 cut(s)	395, 693
NcoI	CCATGG	1 cut(s)	72
NdeI	CATATG	3 cut(s)	553, 575, 907
NdeII	GATC	6 cut(s)	255, 354, 673, 726, 769, 853
NlaIII	CATG	7 cut(s)	76, 178, 274, 355, 680, 707, 866
NlaIV	GGNNCC	3 cut(s)	147, 398, 399
NmuCI	GTSAC	1 cut(s)	20
PagI	TCATGA	1 cut(s)	676
PcsI	WCGNNNNNNNCGW	1 cut(s)	273
PctI	GAATGC	1 cut(s)	214
PdmI	GAANNNNTTC	1 cut(s)	135
PflMI	CCANNNNNTGG	3 cut(s)	31, 180, 407
PkrI	GCNGC	4 cut(s)	618, 630, 745, 817
PpuMI	RGGWCCY	1 cut(s)	397
PshBI	ATTAAT	1 cut(s)	417
Psp5II	RGGWCCY	1 cut(s)	397
PspN4I	GGNNCC	3 cut(s)	147, 398, 399
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
PstNI	CAGNNNCTG	1 cut(s)	628
RseI	CAYNNNNRTG	2 cut(s)	269, 861
SaqAI	TTAA	4 cut(s)	231, 417, 455, 804
SatI	GCNGC	4 cut(s)	617, 629, 744, 816
Sau3AI	GATC	6 cut(s)	255, 354, 673, 726, 769, 853
Sau96I	GGNCC	1 cut(s)	397
ScrFI	CCNGG	2 cut(s)	395, 693
SfaNI	GCATC	2 cut(s)	207, 615
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	2 cut(s)	269, 861
SmlI	CTYRAG	2 cut(s)	454, 566
SmoI	CTYRAG	2 cut(s)	454, 566
Sse9I	AATT	5 cut(s)	48, 108, 402, 494, 585
SsiI	CCGC	1 cut(s)	816
SspMI	CTAG	3 cut(s)	53, 300, 377
StyD4I	CCNGG	2 cut(s)	393, 691
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	20, 313
TaiI	ACGT	3 cut(s)	339, 714, 804
TaqI	TCGA	4 cut(s)	68, 106, 492, 882
TasI	AATT	5 cut(s)	48, 108, 402, 494, 585
TauI	GCSGC	1 cut(s)	818
Tru1I	TTAA	4 cut(s)	231, 417, 455, 804
Tru9I	TTAA	4 cut(s)	231, 417, 455, 804
TscAI	CASTG	4 cut(s)	96, 318, 442, 918
TseFI	GTSAC	1 cut(s)	20
TseI	GCWGC	3 cut(s)	616, 628, 743
Tsp45I	GTSAC	1 cut(s)	20
TspDTI	ATGAA	3 cut(s)	347, 746, 912
TspGWI	ACGGA	2 cut(s)	863, 868
TspRI	CASTG	4 cut(s)	96, 318, 442, 918
Van91I	CCANNNNNTGG	3 cut(s)	31, 180, 407
Vha464I	CTTAAG	1 cut(s)	454
VpaK11BI	GGWCC	1 cut(s)	397
VspI	ATTAAT	1 cut(s)	417
XapI	RAATTY	3 cut(s)	48, 108, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	408
XmnI	GAANNNNTTC	1 cut(s)	135
XspI	CTAG	3 cut(s)	53, 300, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.