Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

51682319 .. 51685026

Gene Structure 2708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG295100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAGTTCCTTGATTTCTAATACAGTTTCGTTTTGCATGGCAGGTAATCTAATTTCCTTCATGGTTTACTTAGCCCCAGTGCCAACGTTTTACCGGATTTACAGAAAGAGATCGACTGAGGGTTTCCAATCGGTGCCGTATCTGGTAGCACTGTTTAGTGCCACGCTTTGGCTCTACTATGCCATGCTGAAGCAAAATGCTGTGCTTCTCATCACAATCAACACCTTCGGAAGTGTAATAGAGACTCTGTACATCGCCATGTATATTGTTTATGCAACAAAGGCTTCAAGGAAATTCACTATCAAGTTACTAGGGTTTATGAACTTCGGACTCTTCTCCTTGATCCTTGTCGTTTTACACTATGCATTCCATAGTCAATACCGTGCCCCGGTTCTCGGATGGATCAACGTTGCCATTTCCGTTTGTGTTTTTGCAGCGCCCTTGAGTATTGTGGCGCAGGTGATCCGCACAAAAAGTGTTGAATTTATGCCATTCAGCTTATCATTCTTCCTTACTTTGAGTGCCGTGATGTGGTTTGCCTATGGACTGTTCCTCAAGGACATTTGCATAGCAGTAAGTAGTAATTATTTCCCAAAAATTACATATACGTACATCCCAATAATTAACTACTTCCACACTAACGAGTTTTCTCTTTTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

220

Amino Acids

25.12

Weight (kDa)

9.49

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	11 - 94	1.5e-24	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	131 - 194	8.2e-18	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	448
Acc36I	ACCTGC	2 cut(s)	32, 448
AccB1I	GGYRCC	1 cut(s)	133
AccB7I	CCANNNNNTGG	1 cut(s)	168
AciI	CCGC	1 cut(s)	466
AclI	AACGTT	2 cut(s)	86, 408
AclWI	GGATC	3 cut(s)	337, 410, 457
AcsI	RAATTY	2 cut(s)	293, 482
AcuI	CTGAAG	1 cut(s)	209
AfaI	GTAC	2 cut(s)	251, 611
AfiI	CCNNNNNNNGG	4 cut(s)	168, 388, 395, 531
AgsI	TTSAA	2 cut(s)	288, 482
AluBI	AGCT	1 cut(s)	498
AluI	AGCT	1 cut(s)	498
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	3 cut(s)	337, 410, 457
ApeKI	GCWGC	1 cut(s)	434
ApoI	RAATTY	2 cut(s)	293, 482
AspLEI	GCGC	2 cut(s)	439, 457
AsuC2I	CCSGG	1 cut(s)	389
AsuHPI	GGTGA	1 cut(s)	472
BaeGI	GKGCMC	1 cut(s)	388
BanI	GGYRCC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	446
BccI	CCATC	1 cut(s)	393
BceAI	ACGGC	2 cut(s)	121, 509
BcnI	CCSGG	1 cut(s)	389
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	1 cut(s)	311
BfoI	RGCGCY	1 cut(s)	440
BfuAI	ACCTGC	2 cut(s)	32, 448
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
Bme1390I	CCNGG	1 cut(s)	389
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	389
BmrI	ACTGGG	1 cut(s)	71
BmuI	ACTGGG	1 cut(s)	71
BpuEI	CTTGAG	2 cut(s)	463, 539
BpuMI	CCSGG	1 cut(s)	389
BsaAI	YACGTR	1 cut(s)	609
BsaJI	CCNNGG	1 cut(s)	387
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	4 cut(s)	168, 388, 395, 531
Bse1I	ACTGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	2 cut(s)	404, 612
BseLI	CCNNNNNNNGG	4 cut(s)	168, 388, 395, 531
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	77
BseSI	GKGCMC	1 cut(s)	388
BseXI	GCAGC	1 cut(s)	446
BshNI	GGYRCC	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	94, 389
BslI	CCNNNNNNNGG	4 cut(s)	168, 388, 395, 531
BsmAI	GTCTC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	365
Bsp1286I	GDGCHC	1 cut(s)	388
Bsp1407I	TGTACA	1 cut(s)	249
Bsp143I	GATC	4 cut(s)	110, 342, 402, 462
BspACI	CCGC	1 cut(s)	466
BspCNI	CTCAG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	135
BspMI	ACCTGC	2 cut(s)	32, 448
BspPI	GGATC	3 cut(s)	337, 410, 457
BspT107I	GGYRCC	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	77
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	4 cut(s)	110, 342, 402, 462
Bst4CI	ACNGT	4 cut(s)	25, 153, 383, 549
Bst6I	CTCTTC	1 cut(s)	338
BstAUI	TGTACA	1 cut(s)	249
BstBAI	YACGTR	1 cut(s)	609
BstDEI	CTNAG	2 cut(s)	70, 117
BstF5I	GGATG	2 cut(s)	404, 612
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	2 cut(s)	439, 457
BstKTI	GATC	4 cut(s)	113, 345, 405, 465
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	4 cut(s)	110, 342, 402, 462
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstSCI	CCNGG	1 cut(s)	387
BstSLI	GKGCMC	1 cut(s)	388
BstSNI	TACGTA	1 cut(s)	609
BstV1I	GCAGC	1 cut(s)	446
BtgZI	GCGATG	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	404, 612
BtsIMutI	CAGTG	2 cut(s)	84, 149
BveI	ACCTGC	2 cut(s)	32, 448
CfoI	GCGC	2 cut(s)	439, 457
Csp6I	GTAC	2 cut(s)	250, 610
CviAII	CATG	4 cut(s)	37, 61, 184, 259
CviJI	RGCY	4 cut(s)	74, 172, 284, 498
CviKI_1	RGCY	4 cut(s)	74, 172, 284, 498
CviQI	GTAC	2 cut(s)	250, 610
DdeI	CTNAG	2 cut(s)	70, 117
DpnI	GATC	4 cut(s)	112, 344, 404, 464
DpnII	GATC	4 cut(s)	110, 342, 402, 462
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
Eco105I	TACGTA	1 cut(s)	609
Eco57I	CTGAAG	1 cut(s)	209
EcoT22I	ATGCAT	1 cut(s)	367
FaeI	CATG	4 cut(s)	40, 64, 187, 262
FatI	CATG	4 cut(s)	36, 60, 183, 258
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	2 cut(s)	411, 599
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	1 cut(s)	311
GlaI	GCGC	2 cut(s)	438, 456
GluI	GCNGC	1 cut(s)	435
HaeII	RGCGCY	1 cut(s)	440
HapII	CCGG	2 cut(s)	94, 389
HhaI	GCGC	2 cut(s)	439, 457
Hin1II	CATG	4 cut(s)	40, 64, 187, 262
Hin6I	GCGC	2 cut(s)	437, 455
HinP1I	GCGC	2 cut(s)	437, 455
HinfI	GANTC	2 cut(s)	244, 330
HpaII	CCGG	2 cut(s)	94, 389
HphI	GGTGA	1 cut(s)	472
Hpy166II	GTNNAC	1 cut(s)	67
Hpy188I	TCNGA	3 cut(s)	230, 329, 398
Hpy8I	GTNNAC	1 cut(s)	67
HpyAV	CCTTC	2 cut(s)	67, 235
HpyCH4III	ACNGT	4 cut(s)	25, 153, 383, 549
HpyCH4IV	ACGT	3 cut(s)	86, 408, 608
HpyCH4V	TGCA	5 cut(s)	36, 275, 365, 434, 567
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	2 cut(s)	70, 117
HpySE526I	ACGT	3 cut(s)	86, 408, 608
Hsp92II	CATG	4 cut(s)	40, 64, 187, 262
HspAI	GCGC	2 cut(s)	437, 455
Kzo9I	GATC	4 cut(s)	110, 342, 402, 462
LpnPI	CCDG	6 cut(s)	27, 90, 107, 128, 402, 443
Lsp1109I	GCAGC	1 cut(s)	446
MaeI	CTAG	1 cut(s)	311
MaeII	ACGT	3 cut(s)	86, 408, 608
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	4 cut(s)	112, 344, 404, 464
MboI	GATC	4 cut(s)	110, 342, 402, 462
MboII	GAAGA	2 cut(s)	325, 499
MhlI	GDGCHC	1 cut(s)	388
MluCI	AATT	6 cut(s)	51, 293, 482, 583, 597, 621
MlyI	GAGTC	2 cut(s)	238, 324
MnlI	CCTC	2 cut(s)	112, 563
Mph1103I	ATGCAT	1 cut(s)	367
MseI	TTAA	1 cut(s)	624
MslI	CAYNNNNRTG	1 cut(s)	257
MspI	CCGG	2 cut(s)	94, 389
MspR9I	CCNGG	1 cut(s)	389
Mva1269I	GAATGC	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	4 cut(s)	110, 342, 402, 462
NlaIII	CATG	4 cut(s)	40, 64, 187, 262
NlaIV	GGNNCC	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	367
PaqCI	CACCTGC	1 cut(s)	448
PctI	GAATGC	1 cut(s)	365
PflMI	CCANNNNNTGG	1 cut(s)	168
PkrI	GCNGC	1 cut(s)	436
PleI	GAGTC	2 cut(s)	238, 324
PpsI	GAGTC	2 cut(s)	238, 324
Ppu21I	YACGTR	1 cut(s)	609
Psp1406I	AACGTT	2 cut(s)	86, 408
PspN4I	GGNNCC	1 cut(s)	135
RsaI	GTAC	2 cut(s)	251, 611
RsaNI	GTAC	2 cut(s)	250, 610
RseI	CAYNNNNRTG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	624
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	4 cut(s)	110, 342, 402, 462
SchI	GAGTC	2 cut(s)	238, 324
ScrFI	CCNGG	1 cut(s)	389
SduI	GDGCHC	1 cut(s)	388
SetI	ASST	7 cut(s)	46, 89, 227, 411, 462, 500, 611
SmiMI	CAYNNNNRTG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	442, 554
SmoI	CTYRAG	2 cut(s)	442, 554
SnaBI	TACGTA	1 cut(s)	609
Sse9I	AATT	6 cut(s)	51, 293, 482, 583, 597, 621
SsiI	CCGC	1 cut(s)	466
SspMI	CTAG	1 cut(s)	311
StyD4I	CCNGG	1 cut(s)	387
TaaI	ACNGT	4 cut(s)	25, 153, 383, 549
TaiI	ACGT	3 cut(s)	89, 411, 611
TaqI	TCGA	1 cut(s)	113
TasI	AATT	6 cut(s)	51, 293, 482, 583, 597, 621
TatI	WGTACW	1 cut(s)	249
Tru1I	TTAA	1 cut(s)	624
Tru9I	TTAA	1 cut(s)	624
TscAI	CASTG	2 cut(s)	84, 156
TseI	GCWGC	1 cut(s)	434
TspDTI	ATGAA	3 cut(s)	49, 335, 646
TspGWI	ACGGA	1 cut(s)	409
TspRI	CASTG	2 cut(s)	84, 156
Van91I	CCANNNNNTGG	1 cut(s)	168
XapI	RAATTY	2 cut(s)	293, 482
XspI	CTAG	1 cut(s)	311
Zsp2I	ATGCAT	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.