Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

17352096 .. 17354436

Gene Structure 2341 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00346500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGGCGCAGTAGCGGACAGTCAACATCCTTGGGCATTTGCATTTGGCATTCTAGGTAATCTAATTTCAATCATGGTTTACTTGGCCCCAGTGCCAACATTTTACCGGATTTACATAGGGAAATCAACTGAAAGTTTCCAATCGGTGCCATATCTGGTAGAACTGTTTAGTTCCACGCTTTGGGTCTACTATGCCATACTGAAGCAAAATGCTGTGCTATTGATCACAATTAACACCTTCGGAAGTGTGATGGAGACTTTGTACATCGCCATGTACATTGTTTATGCAACAAACGCTTCAAGGAAATTCACTATCAAGTTATTCGGGTTTATGAACTTGGGACTCTTTTCCTTGATCATTGTCCTTTCCCACTATGTATTTCATACTCAATACCGTGTCCCGGTTCTCGGATGGATCAACATTGCCATTAACGTTTGTTCTTTTGCAGCGCCCTTGACTATTGTGGCACAGGTGATCGGCACAAAAAGCATTGAATTTATGCCGTTCAGCTTATCATTCTTCCTTACATTGAGTGGTGTGTTGTGGTTTGCGTATGGGCTCGTCGTCAAGGACATATTCATAGCAATTTCATATGGGTTAGGTTTTGTCTTGGGTCTCCTTCAGATGTTGTTCTACGCCATATATAGAAACCGCAATGAGGTCATAGTTGATAAGGAGAAGACGCCTCCGGGACAAGACCACGTGACAAACGCTGTGATTCTGAGCACTATCGCAACATCGGAAGTTCATTCGGCGGATGCTAAGCTGTGCAATTGCAATGATGTCAAAGATGGCAAAGATAGAAATAAGGACAGTGATAGCAATGAACATAAGTCTATGGAGTTGGTGGTGAATATGGATGCTTCGGGTGACGTCCAACTGAAATCTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

297

Amino Acids

33.12

Weight (kDa)

6.29

Isoelectric Point (pI)

31.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	14 - 98	8.9e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 219	3e-22	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	876
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	186
AciI	CCGC	3 cut(s)	14, 652, 755
AclI	AACGTT	1 cut(s)	432
AclWI	GGATC	1 cut(s)	422
AcsI	RAATTY	2 cut(s)	305, 494
AcuI	CTGAAG	2 cut(s)	221, 605
AcvI	CACGTG	1 cut(s)	703
AcyI	GRCGYC	2 cut(s)	683, 873
AfaI	GTAC	2 cut(s)	263, 275
AfiI	CCNNNNNNNGG	4 cut(s)	180, 400, 407, 658
AgsI	TTSAA	3 cut(s)	69, 300, 494
AluBI	AGCT	2 cut(s)	510, 766
AluI	AGCT	2 cut(s)	510, 766
Alw21I	GWGCWC	1 cut(s)	728
Alw26I	GTCTC	2 cut(s)	248, 620
AlwI	GGATC	1 cut(s)	422
AoxI	GGCC	1 cut(s)	84
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	2 cut(s)	305, 494
AspLEI	GCGC	2 cut(s)	8, 451
AspS9I	GGNCC	1 cut(s)	85
AsuC2I	CCSGG	2 cut(s)	401, 690
AsuHPI	GGTGA	3 cut(s)	484, 862, 881
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	561
BbrPI	CACGTG	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	686
Bbv12I	GWGCWC	1 cut(s)	728
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	3 cut(s)	244, 405, 785
BceAI	ACGGC	1 cut(s)	487
BclI	TGATCA	2 cut(s)	222, 354
BcnI	CCSGG	2 cut(s)	401, 690
BcoDI	GTCTC	2 cut(s)	248, 620
BfaI	CTAG	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	452
BisI	GCNGC	1 cut(s)	447
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	2 cut(s)	401, 690
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	2 cut(s)	87, 147
BmrFI	CCNGG	2 cut(s)	401, 690
BmrI	ACTGGG	1 cut(s)	83
BmsI	GCATC	2 cut(s)	748, 850
BmuI	ACTGGG	1 cut(s)	83
BpiI	GAAGAC	1 cut(s)	686
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuMI	CCSGG	2 cut(s)	401, 690
BsaAI	YACGTR	1 cut(s)	703
BsaHI	GRCGYC	2 cut(s)	683, 873
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	1 cut(s)	29
BsaWI	WCCGGW	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	245, 275
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 400, 407, 658
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	4 cut(s)	420, 661, 784, 829
BseDI	CCNNGG	1 cut(s)	29
BseGI	GGATG	4 cut(s)	25, 416, 763, 865
BseLI	CCNNNNNNNGG	4 cut(s)	180, 400, 407, 658
BseMI	GCAATG	4 cut(s)	420, 661, 784, 829
BseMII	CTCAG	1 cut(s)	713
BseNI	ACTGG	1 cut(s)	89
BseXI	GCAGC	1 cut(s)	458
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	728
BsiSI	CCGG	3 cut(s)	106, 401, 689
BslFI	GGGAC	3 cut(s)	354, 383, 705
BslI	CCNNNNNNNGG	4 cut(s)	180, 400, 407, 658
BsmAI	GTCTC	2 cut(s)	248, 620
BsmFI	GGGAC	3 cut(s)	354, 383, 705
BsmI	GAATGC	1 cut(s)	48
BsnI	GGCC	1 cut(s)	86
Bso31I	GGTCTC	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	561, 728
Bsp1407I	TGTACA	2 cut(s)	261, 273
Bsp143I	GATC	4 cut(s)	222, 354, 414, 474
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	3 cut(s)	14, 652, 755
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	714
BspLI	GGNNCC	2 cut(s)	87, 147
BspPI	GGATC	1 cut(s)	422
BspT107I	GGYRCC	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	4 cut(s)	420, 661, 784, 829
BsrGI	TGTACA	2 cut(s)	261, 273
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	29
BssMI	GATC	4 cut(s)	222, 354, 414, 474
BssNI	GRCGYC	2 cut(s)	683, 873
BssT1I	CCWWGG	1 cut(s)	29
Bst4CI	ACNGT	4 cut(s)	20, 165, 395, 815
BstACI	GRCGYC	2 cut(s)	683, 873
BstAUI	TGTACA	2 cut(s)	261, 273
BstBAI	YACGTR	1 cut(s)	703
BstDEI	CTNAG	2 cut(s)	722, 762
BstF5I	GGATG	4 cut(s)	25, 416, 763, 865
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	2 cut(s)	8, 451
BstKTI	GATC	4 cut(s)	225, 357, 417, 477
BstMAI	GTCTC	2 cut(s)	248, 620
BstMBI	GATC	4 cut(s)	222, 354, 414, 474
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 486
BstSCI	CCNGG	2 cut(s)	399, 688
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	1 cut(s)	686
BsuRI	GGCC	1 cut(s)	86
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	4 cut(s)	25, 416, 763, 865
BtsIMutI	CAGTG	2 cut(s)	96, 820
CfoI	GCGC	2 cut(s)	8, 451
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	691
Csp6I	GTAC	2 cut(s)	262, 274
CviAII	CATG	2 cut(s)	73, 271
CviJI	RGCY	4 cut(s)	86, 510, 559, 766
CviKI_1	RGCY	4 cut(s)	86, 510, 559, 766
CviQI	GTAC	2 cut(s)	262, 274
DdeI	CTNAG	2 cut(s)	722, 762
DpnI	GATC	4 cut(s)	224, 356, 416, 476
DpnII	GATC	4 cut(s)	222, 354, 414, 474
EciI	GGCGGA	1 cut(s)	770
Eco130I	CCWWGG	1 cut(s)	29
Eco24I	GRGCYC	1 cut(s)	561
Eco31I	GGTCTC	1 cut(s)	620
Eco57I	CTGAAG	2 cut(s)	221, 605
Eco72I	CACGTG	1 cut(s)	703
EcoT14I	CCWWGG	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	561
ErhI	CCWWGG	1 cut(s)	29
FaeI	CATG	2 cut(s)	76, 274
FaqI	GGGAC	3 cut(s)	354, 383, 705
FatI	CATG	2 cut(s)	72, 270
FauNDI	CATATG	1 cut(s)	592
FbaI	TGATCA	2 cut(s)	222, 354
FblI	GTMKAC	1 cut(s)	186
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	4 cut(s)	12, 423, 770, 872
FriOI	GRGCYC	1 cut(s)	561
Fsp4HI	GCNGC	1 cut(s)	447
FspBI	CTAG	1 cut(s)	53
GlaI	GCGC	2 cut(s)	7, 450
GluI	GCNGC	1 cut(s)	447
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	1 cut(s)	86
HapII	CCGG	3 cut(s)	106, 401, 689
HgaI	GACGC	1 cut(s)	691
HhaI	GCGC	2 cut(s)	8, 451
Hin1I	GRCGYC	2 cut(s)	683, 873
Hin1II	CATG	2 cut(s)	76, 274
Hin6I	GCGC	2 cut(s)	6, 449
HinP1I	GCGC	2 cut(s)	6, 449
HincII	GTYRAC	1 cut(s)	23
HindII	GTYRAC	1 cut(s)	23
HinfI	GANTC	2 cut(s)	342, 718
HpaII	CCGG	3 cut(s)	106, 401, 689
HphI	GGTGA	3 cut(s)	484, 862, 881
Hpy166II	GTNNAC	3 cut(s)	23, 79, 187
Hpy188I	TCNGA	6 cut(s)	242, 410, 624, 723, 742, 889
Hpy8I	GTNNAC	3 cut(s)	23, 79, 187
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	2 cut(s)	247, 629
HpyCH4III	ACNGT	4 cut(s)	20, 165, 395, 815
HpyCH4IV	ACGT	3 cut(s)	432, 702, 873
HpyCH4V	TGCA	5 cut(s)	41, 287, 446, 771, 777
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 486
HpyF3I	CTNAG	2 cut(s)	722, 762
HpySE526I	ACGT	3 cut(s)	432, 702, 873
Hsp92I	GRCGYC	2 cut(s)	683, 873
Hsp92II	CATG	2 cut(s)	76, 274
HspAI	GCGC	2 cut(s)	6, 449
Ksp22I	TGATCA	2 cut(s)	222, 354
Kzo9I	GATC	4 cut(s)	222, 354, 414, 474
LpnPI	CCDG	6 cut(s)	102, 119, 140, 414, 455, 702
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	2 cut(s)	748, 850
MaeI	CTAG	1 cut(s)	53
MaeII	ACGT	3 cut(s)	432, 702, 873
MaeIII	GTNAC	2 cut(s)	703, 869
MalI	GATC	4 cut(s)	224, 356, 416, 476
MboI	GATC	4 cut(s)	222, 354, 414, 474
MboII	GAAGA	2 cut(s)	511, 691
MfeI	CAATTG	1 cut(s)	772
MhlI	GDGCHC	2 cut(s)	561, 728
MluCI	AATT	6 cut(s)	63, 228, 305, 494, 585, 772
MlyI	GAGTC	1 cut(s)	336
MnlI	CCTC	2 cut(s)	652, 696
MseI	TTAA	3 cut(s)	231, 429, 892
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	3 cut(s)	106, 401, 689
MspR9I	CCNGG	2 cut(s)	401, 690
MunI	CAATTG	1 cut(s)	772
Mva1269I	GAATGC	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	293, 486
NciI	CCSGG	2 cut(s)	401, 690
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	4 cut(s)	222, 354, 414, 474
NlaIII	CATG	2 cut(s)	76, 274
NlaIV	GGNNCC	2 cut(s)	87, 147
NmuCI	GTSAC	2 cut(s)	703, 869
PctI	GAATGC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	718
PflMI	CCANNNNNTGG	1 cut(s)	180
PfoI	TCCNGGA	1 cut(s)	688
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	1 cut(s)	336
PmaCI	CACGTG	1 cut(s)	703
PmlI	CACGTG	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	336
Ppu21I	YACGTR	1 cut(s)	703
Psp1406I	AACGTT	1 cut(s)	432
PspCI	CACGTG	1 cut(s)	703
PspN4I	GGNNCC	2 cut(s)	87, 147
PspPI	GGNCC	1 cut(s)	85
RsaI	GTAC	2 cut(s)	263, 275
RsaNI	GTAC	2 cut(s)	262, 274
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	3 cut(s)	231, 429, 892
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	4 cut(s)	222, 354, 414, 474
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	401, 690
SduI	GDGCHC	2 cut(s)	561, 728
SfaNI	GCATC	2 cut(s)	748, 850
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	6 cut(s)	63, 228, 305, 494, 585, 772
SsiI	CCGC	3 cut(s)	14, 652, 755
SspMI	CTAG	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	399, 688
StyI	CCWWGG	1 cut(s)	29
TaaI	ACNGT	4 cut(s)	20, 165, 395, 815
TaiI	ACGT	3 cut(s)	435, 705, 876
TasI	AATT	6 cut(s)	63, 228, 305, 494, 585, 772
TatI	WGTACW	2 cut(s)	261, 273
TfiI	GAWTC	1 cut(s)	718
Tru1I	TTAA	3 cut(s)	231, 429, 892
Tru9I	TTAA	3 cut(s)	231, 429, 892
TscAI	CASTG	2 cut(s)	96, 820
TseFI	GTSAC	2 cut(s)	703, 869
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	2 cut(s)	703, 869
TspDTI	ATGAA	6 cut(s)	347, 371, 568, 579, 737, 840
TspRI	CASTG	2 cut(s)	96, 820
Van91I	CCANNNNNTGG	1 cut(s)	180
XapI	RAATTY	2 cut(s)	305, 494
XmiI	GTMKAC	1 cut(s)	186
XspI	CTAG	1 cut(s)	53
ZraI	GACGTC	1 cut(s)	874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.