Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

25050351 .. 25051866

Gene Structure 1516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g22110.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCTGCTGCAGATAGCCAACATCATTTGGCGTTTATCTTTGTCGTCATAGGTGATGTGATCTCCTTTATGGTTTACCTAGCCCCAGTGCCAACATTTTACCGGATTTACAAAAAGAAAACGACTGAGGGTTTCCAATCGCTGCCCTATTTGGTAGCTCTGTTTGGTTCCACGCTTTGGCTCTACTATGGCATAGTAAAGCAAAATATGGTGCTTTTAATCACAATCAACACTTTCGGAAGTGTAATGGAGACTTTGTACATCGCCATGTACATTGTTTATGCAACAAACGCTTCAAGGGCACAGGTGATCCGCACAGGAAGTGTTGAGTTTATGCCGTTCACCTTATCATTCTTCCTTACCTTGAGTGGCGTGTTGTGGTTCTCTTATGGAATGCTCCTCAAAGATATATTCATAGCACTTCCGAATGGGTTAGGTTTTGTCTTGGGTCTCCTTCAGATGCTGTTCTACGCCATATACAGAAACCGCAAGCAGGTCACAGTTGATCAGCGGAATAAGCTTCCTGCACCGGAGCACGTAACGGATACTGTGATTCTGAGTATAGCAACATCCGAAGTTCAATCGGTGGATGCTAAGCAGTGCTATGATTATGACGGGAAAGATGGAAGCAAGGAGAGTGATGGGGATGAACATGAGAAGTGCGTGGTGGAGATGGTGGATGTTGATGCTTCGGGTGATCTAGCTAGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

238

Amino Acids

26.54

Weight (kDa)

5.15

Isoelectric Point (pI)

34.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	14 - 97	2.4e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	101 - 164	4.8e-19	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	177
AciI	CCGC	3 cut(s)	313, 487, 511
AclWI	GGATC	1 cut(s)	304
AcuI	CTGAAG	1 cut(s)	440
AfaI	GTAC	2 cut(s)	260, 272
AfiI	CCNNNNNNNGG	2 cut(s)	177, 493
AgsI	TTSAA	2 cut(s)	297, 581
AluBI	AGCT	3 cut(s)	158, 520, 704
AluI	AGCT	3 cut(s)	158, 520, 704
Alw21I	GWGCWC	1 cut(s)	537
Alw26I	GTCTC	2 cut(s)	245, 455
AlwI	GGATC	1 cut(s)	304
AlwNI	CAGNNNCTG	1 cut(s)	463
ApeKI	GCWGC	3 cut(s)	5, 8, 142
AsuHPI	GGTGA	4 cut(s)	65, 319, 334, 707
AsuNHI	GCTAGC	1 cut(s)	704
BaeGI	GKGCMC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	537
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	3 cut(s)	617, 635, 667
BceAI	ACGGC	1 cut(s)	322
BciVI	GTATCC	1 cut(s)	538
BclI	TGATCA	1 cut(s)	505
BcoDI	GTCTC	2 cut(s)	245, 455
BfaI	CTAG	3 cut(s)	80, 701, 705
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	3 cut(s)	6, 9, 143
BlpI	GCTNAGC	1 cut(s)	594
BlsI	GCNGC	3 cut(s)	7, 10, 144
BmiI	GGNNCC	1 cut(s)	169
BmrI	ACTGGG	1 cut(s)	80
BmsI	GCATC	3 cut(s)	450, 580, 676
BmtI	GCTAGC	1 cut(s)	708
BmuI	ACTGGG	1 cut(s)	80
Bpu1102I	GCTNAGC	1 cut(s)	594
BpuEI	CTTGAG	1 cut(s)	385
BsaAI	YACGTR	1 cut(s)	538
BsaI	GGTCTC	1 cut(s)	455
BsaWI	WCCGGW	2 cut(s)	102, 529
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	2 cut(s)	177, 493
Bse1I	ACTGG	1 cut(s)	86
BseGI	GGATG	4 cut(s)	569, 595, 652, 685
BseLI	CCNNNNNNNGG	2 cut(s)	177, 493
BseMII	CTCAG	2 cut(s)	117, 548
BseNI	ACTGG	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	389
BseSI	GKGCMC	1 cut(s)	304
BseXI	GCAGC	1 cut(s)	129
BsgI	GTGCAG	1 cut(s)	510
BsiHKAI	GWGCWC	1 cut(s)	537
BsiSI	CCGG	2 cut(s)	103, 530
BslI	CCNNNNNNNGG	2 cut(s)	177, 493
BsmAI	GTCTC	2 cut(s)	245, 455
BsmI	GAATGC	1 cut(s)	399
Bso31I	GGTCTC	1 cut(s)	455
Bsp1286I	GDGCHC	2 cut(s)	304, 537
Bsp1407I	TGTACA	2 cut(s)	258, 270
Bsp143I	GATC	4 cut(s)	60, 309, 505, 697
Bsp1720I	GCTNAGC	1 cut(s)	594
BspACI	CCGC	3 cut(s)	313, 487, 511
BspCNI	CTCAG	2 cut(s)	118, 549
BspLI	GGNNCC	1 cut(s)	169
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	484
BspOI	GCTAGC	1 cut(s)	708
BspPI	GGATC	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	455
BsrGI	TGTACA	2 cut(s)	258, 270
BsrI	ACTGG	1 cut(s)	86
BssMI	GATC	4 cut(s)	60, 309, 505, 697
Bst4CI	ACNGT	2 cut(s)	502, 550
BstAUI	TGTACA	2 cut(s)	258, 270
BstBAI	YACGTR	1 cut(s)	538
BstC8I	GCNNGC	2 cut(s)	491, 706
BstDEI	CTNAG	3 cut(s)	126, 557, 594
BstF5I	GGATG	4 cut(s)	569, 595, 652, 685
BstKTI	GATC	4 cut(s)	63, 312, 508, 700
BstMAI	GTCTC	2 cut(s)	245, 455
BstMBI	GATC	4 cut(s)	60, 309, 505, 697
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 299, 517
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	304
BstV1I	GCAGC	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	538
BtgZI	GCGATG	1 cut(s)	247
BtsCI	GGATG	4 cut(s)	569, 595, 652, 685
BtsI	GCAGTG	1 cut(s)	605
BtsIMutI	CAGTG	2 cut(s)	93, 605
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	491, 706
CaiI	CAGNNNCTG	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	259, 271
CviAII	CATG	2 cut(s)	268, 653
CviJI	RGCY	8 cut(s)	5, 18, 83, 158, 181, 520, 704, 708
CviKI_1	RGCY	8 cut(s)	5, 18, 83, 158, 181, 520, 704, 708
CviQI	GTAC	2 cut(s)	259, 271
DdeI	CTNAG	3 cut(s)	126, 557, 594
DpnI	GATC	4 cut(s)	62, 311, 507, 699
DpnII	GATC	4 cut(s)	60, 309, 505, 697
Eco31I	GGTCTC	1 cut(s)	455
Eco57I	CTGAAG	1 cut(s)	440
FaeI	CATG	2 cut(s)	271, 656
FatI	CATG	2 cut(s)	267, 652
FbaI	TGATCA	1 cut(s)	505
Fnu4HI	GCNGC	3 cut(s)	6, 9, 143
FokI	GGATG	4 cut(s)	556, 602, 659, 692
Fsp4HI	GCNGC	3 cut(s)	6, 9, 143
FspBI	CTAG	3 cut(s)	80, 701, 705
GluI	GCNGC	3 cut(s)	6, 9, 143
HapII	CCGG	2 cut(s)	103, 530
Hin1II	CATG	2 cut(s)	271, 656
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	1 cut(s)	553
HpaII	CCGG	2 cut(s)	103, 530
HphI	GGTGA	4 cut(s)	65, 319, 334, 707
Hpy166II	GTNNAC	2 cut(s)	76, 342
Hpy188I	TCNGA	5 cut(s)	239, 426, 459, 558, 574
Hpy8I	GTNNAC	2 cut(s)	76, 342
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	2 cut(s)	502, 550
HpyCH4IV	ACGT	1 cut(s)	537
HpyCH4V	TGCA	3 cut(s)	11, 284, 527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 299, 517
HpyF3I	CTNAG	3 cut(s)	126, 557, 594
HpySE526I	ACGT	1 cut(s)	537
Hsp92II	CATG	2 cut(s)	271, 656
Ksp22I	TGATCA	1 cut(s)	505
Kzo9I	GATC	4 cut(s)	60, 309, 505, 697
LmnI	GCTCC	2 cut(s)	402, 532
LpnPI	CCDG	7 cut(s)	99, 116, 290, 303, 479, 537, 543
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	3 cut(s)	450, 580, 676
MaeI	CTAG	3 cut(s)	80, 701, 705
MaeII	ACGT	1 cut(s)	537
MaeIII	GTNAC	2 cut(s)	496, 538
MalI	GATC	4 cut(s)	62, 311, 507, 699
MboI	GATC	4 cut(s)	60, 309, 505, 697
MboII	GAAGA	1 cut(s)	346
MhlI	GDGCHC	2 cut(s)	304, 537
MnlI	CCTC	2 cut(s)	121, 410
MseI	TTAA	2 cut(s)	218, 712
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	511
MspI	CCGG	2 cut(s)	103, 530
Mva1269I	GAATGC	1 cut(s)	399
MwoI	GCNNNNNNNGC	3 cut(s)	290, 299, 517
NdeII	GATC	4 cut(s)	60, 309, 505, 697
NheI	GCTAGC	1 cut(s)	704
NlaIII	CATG	2 cut(s)	271, 656
NlaIV	GGNNCC	1 cut(s)	169
NmuCI	GTSAC	1 cut(s)	496
PctI	GAATGC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	553
PflMI	CCANNNNNTGG	1 cut(s)	177
PkrI	GCNGC	3 cut(s)	7, 10, 144
Ppu21I	YACGTR	1 cut(s)	538
PspN4I	GGNNCC	1 cut(s)	169
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	463
RsaI	GTAC	2 cut(s)	260, 272
RsaNI	GTAC	2 cut(s)	259, 271
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	2 cut(s)	218, 712
SatI	GCNGC	3 cut(s)	6, 9, 143
Sau3AI	GATC	4 cut(s)	60, 309, 505, 697
SduI	GDGCHC	2 cut(s)	304, 537
SfaNI	GCATC	3 cut(s)	450, 580, 676
SfcI	CTRYAG	1 cut(s)	9
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
SsiI	CCGC	3 cut(s)	313, 487, 511
SspMI	CTAG	3 cut(s)	80, 701, 705
TaaI	ACNGT	2 cut(s)	502, 550
TaiI	ACGT	1 cut(s)	540
TatI	WGTACW	2 cut(s)	258, 270
TfiI	GAWTC	1 cut(s)	553
Tru1I	TTAA	2 cut(s)	218, 712
Tru9I	TTAA	2 cut(s)	218, 712
TscAI	CASTG	2 cut(s)	93, 605
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	3 cut(s)	5, 8, 142
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	2 cut(s)	403, 663
TspGWI	ACGGA	1 cut(s)	557
TspRI	CASTG	2 cut(s)	93, 605
Van91I	CCANNNNNTGG	1 cut(s)	177
XspI	CTAG	3 cut(s)	80, 701, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.