Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

23533967 .. 23536346

Gene Structure 2380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G220700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGGTGCACTAGCAGACAGCCACCATCCTTGGGCATTCACATTTGGTATCCTAGGAAATGTAATCTCGTTCTTGGTTTACCTAGCCCCAGTGCCCACATTTTATGGAATTTACAAGAAAAAATCAACTCAAGGTTTCCAATCGGTGCCATATCTGGTAGCATTGTTCAGTGGGATGCTTTGGTTCTACTATGCGTTGCTGAAAAAGAATGCTATGCTTCTCATCACCATTAACTCCTTCGGAACTGTAATAGAAACTATCTACATCGTCATGTTCATTTTTTATGCACCAAAGGATGCTAGGAAATTCACCCTGAAACTATTTGGTTTTATGAACGTGGGGCTCTTCTGCTCGATCCTTGTCCTTTCACACTTTGCTGTGAGAAGTGAATACCGGGTCCCAGTTCTTGGCTGGATCAATGTCGCCATTTCTGTCATTGTTTTTGCTGCCCCCTTAAGTATTGTGGCACAGGTCATCCGAACAAGGAGTGTGGAATTCATGCCATTTAGCTTATCATTTTTCCTTACATTGAGTGCCGTAATGTGGTTTTCCTATGGTCTTTTCCTCAAGGACATTTGTATTGCAATTCCAAACGTGTTGGGTTTTATTCTGGGGTTACTTCAGATGCTGCTCTATGCAATCTACAGAAACCGCAAACCCATAGAAGATGATGAGAAAAAGATACCAGCTGCTGATCAGCACGTGAAAAACGTTGTCGGTTTAACCACATTAGCAACTTCCGAGGTTCATCCGGTGGATCCTCCTCCGCGTGACCACGACAAAAGCGTGGAGGTGGATGCAGGCTCTCACACTGCTGCAGCATCATGTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

278

Amino Acids

30.9

Weight (kDa)

9.02

Isoelectric Point (pI)

33.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	145
AccB7I	CCANNNNNTGG	1 cut(s)	407
AccII	CGCG	1 cut(s)	769
AciI	CCGC	2 cut(s)	652, 767
AclI	AACGTT	1 cut(s)	711
AclWI	GGATC	4 cut(s)	349, 422, 752, 765
AcsI	RAATTY	3 cut(s)	108, 305, 494
AcuI	CTGAAG	1 cut(s)	605
AcvI	CACGTG	1 cut(s)	703
AfiI	CCNNNNNNNGG	3 cut(s)	31, 407, 543
AflII	CTTAAG	1 cut(s)	454
AflIII	ACRYGT	1 cut(s)	594
AluBI	AGCT	2 cut(s)	510, 689
AluI	AGCT	2 cut(s)	510, 689
Alw21I	GWGCWC	1 cut(s)	10
Alw44I	GTGCAC	1 cut(s)	6
AlwI	GGATC	4 cut(s)	349, 422, 752, 765
AlwNI	CAGNNNCTG	2 cut(s)	628, 692
ApaLI	GTGCAC	1 cut(s)	6
ApeKI	GCWGC	5 cut(s)	446, 628, 689, 815, 818
ApoI	RAATTY	3 cut(s)	108, 305, 494
AspA2I	CCTAGG	1 cut(s)	52
AspS9I	GGNCC	1 cut(s)	397
AsuC2I	CCSGG	1 cut(s)	395
AsuHPI	GGTGA	2 cut(s)	217, 301
AvaII	GGWCC	1 cut(s)	397
AvrII	CCTAGG	1 cut(s)	52
BaeGI	GKGCMC	2 cut(s)	10, 96
BamHI	GGATCC	1 cut(s)	757
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	345
BbrPI	CACGTG	1 cut(s)	703
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	5 cut(s)	433, 615, 676, 802, 830
BccI	CCATC	1 cut(s)	33
BceAI	ACGGC	1 cut(s)	521
BciVI	GTATCC	1 cut(s)	59
BclI	TGATCA	1 cut(s)	694
BcnI	CCSGG	1 cut(s)	395
BfaI	CTAG	4 cut(s)	11, 53, 83, 300
BfmI	CTRYAG	2 cut(s)	643, 816
BfrI	CTTAAG	1 cut(s)	454
BfuI	GTATCC	1 cut(s)	59
BisI	GCNGC	5 cut(s)	447, 629, 690, 816, 819
BlnI	CCTAGG	1 cut(s)	52
BlsI	GCNGC	5 cut(s)	448, 630, 691, 817, 820
Bme1390I	CCNGG	1 cut(s)	395
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	1 cut(s)	397
BmiI	GGNNCC	4 cut(s)	147, 398, 399, 759
BmrFI	CCNGG	1 cut(s)	395
BmrI	ACTGGG	2 cut(s)	83, 395
BmsI	GCATC	5 cut(s)	165, 286, 615, 787, 830
BmuI	ACTGGG	2 cut(s)	83, 395
BpuEI	CTTGAG	2 cut(s)	114, 551
BpuMI	CCSGG	1 cut(s)	395
BsaAI	YACGTR	1 cut(s)	703
BsaJI	CCNNGG	3 cut(s)	29, 52, 741
BsaWI	WCCGGW	1 cut(s)	751
Bsc4I	CCNNNNNNNGG	3 cut(s)	31, 407, 543
Bse1I	ACTGG	2 cut(s)	89, 401
BseDI	CCNNGG	3 cut(s)	29, 52, 741
BseGI	GGATG	6 cut(s)	25, 180, 301, 474, 748, 802
BseLI	CCNNNNNNNGG	3 cut(s)	31, 407, 543
BseNI	ACTGG	2 cut(s)	89, 401
BseRI	GAGGAG	1 cut(s)	753
BseSI	GKGCMC	2 cut(s)	10, 96
BseXI	GCAGC	5 cut(s)	433, 615, 676, 802, 830
Bsh1236I	CGCG	1 cut(s)	769
BshNI	GGYRCC	1 cut(s)	145
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	2 cut(s)	394, 752
BslFI	GGGAC	1 cut(s)	383
BslI	CCNNNNNNNGG	3 cut(s)	31, 407, 543
BsmFI	GGGAC	1 cut(s)	383
BsmI	GAATGC	2 cut(s)	35, 214
Bsp1286I	GDGCHC	3 cut(s)	10, 96, 345
Bsp143I	GATC	4 cut(s)	354, 414, 694, 757
BspACI	CCGC	2 cut(s)	652, 767
BspFNI	CGCG	1 cut(s)	769
BspLI	GGNNCC	4 cut(s)	147, 398, 399, 759
BspMAI	CTGCAG	1 cut(s)	820
BspPI	GGATC	4 cut(s)	349, 422, 752, 765
BspQI	GCTCTTC	1 cut(s)	350
BspT107I	GGYRCC	1 cut(s)	145
BspTI	CTTAAG	1 cut(s)	454
BsrI	ACTGG	2 cut(s)	89, 401
BssECI	CCNNGG	3 cut(s)	29, 52, 741
BssMI	GATC	4 cut(s)	354, 414, 694, 757
BssT1I	CCWWGG	2 cut(s)	29, 52
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	350
BstAFI	CTTAAG	1 cut(s)	454
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstBAI	YACGTR	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	802
BstF5I	GGATG	6 cut(s)	25, 180, 301, 474, 748, 802
BstFNI	CGCG	1 cut(s)	769
BstKTI	GATC	4 cut(s)	357, 417, 697, 760
BstMBI	GATC	4 cut(s)	354, 414, 694, 757
BstMWI	GCNNNNNNNGC	1 cut(s)	827
BstSCI	CCNGG	1 cut(s)	393
BstSFI	CTRYAG	2 cut(s)	643, 816
BstSLI	GKGCMC	2 cut(s)	10, 96
BstUI	CGCG	1 cut(s)	769
BstV1I	GCAGC	5 cut(s)	433, 615, 676, 802, 830
BstX2I	RGATCY	1 cut(s)	757
BstYI	RGATCY	1 cut(s)	757
BsuI	GTATCC	1 cut(s)	59
BtsCI	GGATG	6 cut(s)	25, 180, 301, 474, 748, 802
BtsI	GCAGTG	1 cut(s)	810
BtsIMutI	CAGTG	3 cut(s)	96, 175, 810
Cac8I	GCNNGC	1 cut(s)	802
CaiI	CAGNNNCTG	2 cut(s)	628, 692
Cfr13I	GGNCC	1 cut(s)	397
CspCI	CAANNNNNGTGG	4 cut(s)	11, 46, 471, 506
CviAII	CATG	3 cut(s)	271, 499, 825
CviJI	RGCY	7 cut(s)	21, 86, 343, 411, 510, 689, 804
CviKI_1	RGCY	7 cut(s)	21, 86, 343, 411, 510, 689, 804
DpnI	GATC	4 cut(s)	356, 416, 696, 759
DpnII	GATC	4 cut(s)	354, 414, 694, 757
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	29, 52
Eco24I	GRGCYC	1 cut(s)	345
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	1 cut(s)	605
Eco72I	CACGTG	1 cut(s)	703
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	494
EcoT14I	CCWWGG	2 cut(s)	29, 52
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	2 cut(s)	29, 52
FaeI	CATG	3 cut(s)	274, 502, 828
FaqI	GGGAC	1 cut(s)	383
FatI	CATG	3 cut(s)	270, 498, 824
FbaI	TGATCA	1 cut(s)	694
Fnu4HI	GCNGC	5 cut(s)	447, 629, 690, 816, 819
FokI	GGATG	6 cut(s)	12, 187, 308, 461, 735, 809
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	5 cut(s)	447, 629, 690, 816, 819
FspBI	CTAG	4 cut(s)	11, 53, 83, 300
GluI	GCNGC	5 cut(s)	447, 629, 690, 816, 819
HapII	CCGG	2 cut(s)	394, 752
Hin1II	CATG	3 cut(s)	274, 502, 828
HpaII	CCGG	2 cut(s)	394, 752
HphI	GGTGA	2 cut(s)	217, 301
Hpy166II	GTNNAC	2 cut(s)	8, 79
Hpy188I	TCNGA	4 cut(s)	242, 479, 624, 742
Hpy8I	GTNNAC	2 cut(s)	8, 79
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4IV	ACGT	4 cut(s)	336, 594, 702, 711
HpyCH4V	TGCA	7 cut(s)	8, 287, 584, 638, 800, 818, 830
HpyF10VI	GCNNNNNNNGC	1 cut(s)	827
HpySE526I	ACGT	4 cut(s)	336, 594, 702, 711
Hsp92II	CATG	3 cut(s)	274, 502, 828
KflI	GGGWCCC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	694
Kzo9I	GATC	4 cut(s)	354, 414, 694, 757
LguI	GCTCTTC	1 cut(s)	350
Lsp1109I	GCAGC	5 cut(s)	433, 615, 676, 802, 830
LweI	GCATC	5 cut(s)	165, 286, 615, 787, 830
MaeI	CTAG	4 cut(s)	11, 53, 83, 300
MaeII	ACGT	4 cut(s)	336, 594, 702, 711
MaeIII	GTNAC	2 cut(s)	615, 770
MalI	GATC	4 cut(s)	356, 416, 696, 759
MboI	GATC	4 cut(s)	354, 414, 694, 757
MboII	GAAGA	2 cut(s)	337, 677
MflI	RGATCY	1 cut(s)	757
MhlI	GDGCHC	3 cut(s)	10, 96, 345
MluCI	AATT	4 cut(s)	108, 305, 494, 585
MnlI	CCTC	5 cut(s)	575, 736, 771, 774, 784
MseI	TTAA	3 cut(s)	231, 455, 722
MslI	CAYNNNNRTG	1 cut(s)	269
MspA1I	CMGCKG	1 cut(s)	689
MspCI	CTTAAG	1 cut(s)	454
MspI	CCGG	2 cut(s)	394, 752
MspR9I	CCNGG	1 cut(s)	395
Mva1269I	GAATGC	2 cut(s)	35, 214
MvnI	CGCG	1 cut(s)	769
MwoI	GCNNNNNNNGC	1 cut(s)	827
NciI	CCSGG	1 cut(s)	395
NdeII	GATC	4 cut(s)	354, 414, 694, 757
NlaIII	CATG	3 cut(s)	274, 502, 828
NlaIV	GGNNCC	4 cut(s)	147, 398, 399, 759
NmuCI	GTSAC	1 cut(s)	770
PciSI	GCTCTTC	1 cut(s)	350
PcsI	WCGNNNNNNNCGW	2 cut(s)	708, 783
PctI	GAATGC	2 cut(s)	35, 214
PflMI	CCANNNNNTGG	1 cut(s)	407
PkrI	GCNGC	5 cut(s)	448, 630, 691, 817, 820
PmaCI	CACGTG	1 cut(s)	703
PmlI	CACGTG	1 cut(s)	703
Ppu21I	YACGTR	1 cut(s)	703
PpuMI	RGGWCCY	1 cut(s)	397
Psp1406I	AACGTT	1 cut(s)	711
Psp5II	RGGWCCY	1 cut(s)	397
PspCI	CACGTG	1 cut(s)	703
PspN4I	GGNNCC	4 cut(s)	147, 398, 399, 759
PspPI	GGNCC	1 cut(s)	397
PspPPI	RGGWCCY	1 cut(s)	397
PstI	CTGCAG	1 cut(s)	820
PstNI	CAGNNNCTG	2 cut(s)	628, 692
PsuI	RGATCY	1 cut(s)	757
PvuII	CAGCTG	1 cut(s)	689
RseI	CAYNNNNRTG	1 cut(s)	269
SapI	GCTCTTC	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	231, 455, 722
SatI	GCNGC	5 cut(s)	447, 629, 690, 816, 819
Sau3AI	GATC	4 cut(s)	354, 414, 694, 757
Sau96I	GGNCC	1 cut(s)	397
ScrFI	CCNGG	1 cut(s)	395
SduI	GDGCHC	3 cut(s)	10, 96, 345
SfaNI	GCATC	5 cut(s)	165, 286, 615, 787, 830
SfcI	CTRYAG	2 cut(s)	643, 816
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	269
SmlI	CTYRAG	3 cut(s)	129, 454, 566
SmoI	CTYRAG	3 cut(s)	129, 454, 566
Sse9I	AATT	4 cut(s)	108, 305, 494, 585
SsiI	CCGC	2 cut(s)	652, 767
SspMI	CTAG	4 cut(s)	11, 53, 83, 300
StyD4I	CCNGG	1 cut(s)	393
StyI	CCWWGG	2 cut(s)	29, 52
TaaI	ACNGT	1 cut(s)	247
TaiI	ACGT	4 cut(s)	339, 597, 705, 714
TaqI	TCGA	1 cut(s)	353
TasI	AATT	4 cut(s)	108, 305, 494, 585
Tru1I	TTAA	3 cut(s)	231, 455, 722
Tru9I	TTAA	3 cut(s)	231, 455, 722
TscAI	CASTG	3 cut(s)	96, 175, 817
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	5 cut(s)	446, 628, 689, 815, 818
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	4 cut(s)	265, 347, 487, 737
TspRI	CASTG	3 cut(s)	96, 175, 817
Van91I	CCANNNNNTGG	1 cut(s)	407
Vha464I	CTTAAG	1 cut(s)	454
VneI	GTGCAC	1 cut(s)	6
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	3 cut(s)	108, 305, 494
XcmI	CCANNNNNNNNNTGG	1 cut(s)	408
XmaJI	CCTAGG	1 cut(s)	52
XspI	CTAG	4 cut(s)	11, 53, 83, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.