Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

20120663 .. 20122602

Gene Structure 1940 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37371

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGTACGTATAGCACCTACTACATCCCATTTTCCTTCTCTCTGTTTTGGAGTAATACCAGATATGGGCGCAGTAGCGGACAGTCAACATCCTTGGGCATTTGCATTTGGCATTCTAGGTAATCTAATTTCAATCATGGTTTACTTGGCCCCAGTGCCAACATTTTACCGGATTTACATAGGGAAATCGACTGAAAGTTTCCAATCCGTGCCATATCTGGTAGAACTGTTTAGTTCCACGCTTTGGGTCTACTATGCCATACTGAAGCAAAATGCTGTGCTATTCATCACAATTAACACCTTCGGAAGTGTGATGGAGACTTTGTACATCGCCATGTACATTGTTTATGCAACAAACGCTTCAAGGAAATTCACTATCAAGTTATTCGGGTTTATGAACTTGGGACTCTTTTCCTTGATCATTGTCCTTTTACACTATGTATTTCATACTCAATACCGTGTCCCGGTTCTCGGATGGATCAACATTGCCATTAACGTTTGTTCTTTTGCAGCGCCCTTGACTATTGTGGCACAGGTGATCCGCACAAAAAGCGTTGAATTTATGCCGTTCAGCTTATCATTCTTCCTTACACTGAGTGGTGTGTTGTGGTTTGCGTATGGACTCGTCGTCAAGGACATATTCATAGCAATTTCATATGGGTTAGGTTTTGTCTTGGGTCTCCTTCAGATGTTGTTCTACGCCATATATAGAAACCGCAATGAGGTTATAGTTGATAAGGAGAAGACGCCTCCGGGACCAAACCACGTGACAAACGCTGTGATTCTGAGCACTATCGCAACATCTGAAGTTCATTCGGTGGATGCTAAGTCGTGCGATGACAATGATGTCGAAGACGGCAAAGATGGAAATAAGGACAGTGATAGCAATGAACATAAGTGTATGGAGTTGGGGGTGAATATGGATGCTTCGGGTGACGTCCAATTGAAATCTAATGAACCATGTGCAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

323

Amino Acids

35.89

Weight (kDa)

5.78

Isoelectric Point (pI)

33.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	35 - 119	4.1e-22	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	156 - 240	1.6e-23	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	845
AatII	GACGTC	1 cut(s)	939
AccB7I	CCANNNNNTGG	1 cut(s)	243
AccI	GTMKAC	1 cut(s)	249
AciI	CCGC	3 cut(s)	77, 541, 715
AclI	AACGTT	1 cut(s)	495
AclWI	GGATC	2 cut(s)	485, 532
AcsI	RAATTY	2 cut(s)	368, 557
AcuI	CTGAAG	3 cut(s)	284, 668, 825
AcvI	CACGTG	1 cut(s)	766
AcyI	GRCGYC	2 cut(s)	746, 936
AdeI	CACNNNGTG	1 cut(s)	596
AfaI	GTAC	3 cut(s)	6, 326, 338
AfiI	CCNNNNNNNGG	5 cut(s)	65, 243, 463, 470, 721
AgsI	TTSAA	4 cut(s)	132, 363, 557, 946
AhdI	GACNNNNNGTC	1 cut(s)	626
AluBI	AGCT	1 cut(s)	573
AluI	AGCT	1 cut(s)	573
Alw21I	GWGCWC	1 cut(s)	791
Alw26I	GTCTC	2 cut(s)	311, 683
AlwI	GGATC	2 cut(s)	485, 532
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	2 cut(s)	368, 557
AspLEI	GCGC	2 cut(s)	71, 514
AspS9I	GGNCC	2 cut(s)	148, 755
AsuC2I	CCSGG	2 cut(s)	464, 753
AsuHPI	GGTGA	3 cut(s)	547, 925, 944
AvaII	GGWCC	1 cut(s)	755
BbrPI	CACGTG	1 cut(s)	766
BbsI	GAAGAC	2 cut(s)	749, 858
Bbv12I	GWGCWC	1 cut(s)	791
BbvI	GCAGC	1 cut(s)	521
BccI	CCATC	3 cut(s)	307, 468, 857
BceAI	ACGGC	2 cut(s)	550, 871
BclI	TGATCA	1 cut(s)	417
BcnI	CCSGG	2 cut(s)	464, 753
BcoDI	GTCTC	2 cut(s)	311, 683
BfaI	CTAG	1 cut(s)	116
BfoI	RGCGCY	1 cut(s)	515
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	2 cut(s)	464, 753
Bme18I	GGWCC	1 cut(s)	755
BmeRI	GACNNNNNGTC	1 cut(s)	626
BmgT120I	GGNCC	2 cut(s)	148, 755
BmiI	GGNNCC	2 cut(s)	150, 756
BmrFI	CCNGG	2 cut(s)	464, 753
BmrI	ACTGGG	1 cut(s)	146
BmsI	GCATC	2 cut(s)	811, 913
BmuI	ACTGGG	1 cut(s)	146
BpiI	GAAGAC	2 cut(s)	749, 858
BpuMI	CCSGG	2 cut(s)	464, 753
BsaAI	YACGTR	2 cut(s)	8, 766
BsaHI	GRCGYC	2 cut(s)	746, 936
BsaI	GGTCTC	1 cut(s)	683
BsaJI	CCNNGG	1 cut(s)	92
BsaWI	WCCGGW	1 cut(s)	168
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	5 cut(s)	65, 243, 463, 470, 721
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	3 cut(s)	483, 724, 892
BseDI	CCNNGG	1 cut(s)	92
BseGI	GGATG	5 cut(s)	23, 88, 479, 826, 928
BseLI	CCNNNNNNNGG	5 cut(s)	65, 243, 463, 470, 721
BseMI	GCAATG	3 cut(s)	483, 724, 892
BseMII	CTCAG	2 cut(s)	584, 776
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	521
BshFI	GGCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	791
BsiSI	CCGG	3 cut(s)	169, 464, 752
BslFI	GGGAC	3 cut(s)	417, 446, 768
BslI	CCNNNNNNNGG	5 cut(s)	65, 243, 463, 470, 721
BsmAI	GTCTC	2 cut(s)	311, 683
BsmFI	GGGAC	3 cut(s)	417, 446, 768
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	683
Bsp1286I	GDGCHC	1 cut(s)	791
Bsp1407I	TGTACA	2 cut(s)	324, 336
Bsp143I	GATC	3 cut(s)	417, 477, 537
BspACI	CCGC	3 cut(s)	77, 541, 715
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	2 cut(s)	585, 777
BspLI	GGNNCC	2 cut(s)	150, 756
BspPI	GGATC	2 cut(s)	485, 532
BspTNI	GGTCTC	1 cut(s)	683
BsrDI	GCAATG	3 cut(s)	483, 724, 892
BsrGI	TGTACA	2 cut(s)	324, 336
BsrI	ACTGG	1 cut(s)	152
BssECI	CCNNGG	1 cut(s)	92
BssMI	GATC	3 cut(s)	417, 477, 537
BssNI	GRCGYC	2 cut(s)	746, 936
BssT1I	CCWWGG	1 cut(s)	92
Bst4CI	ACNGT	4 cut(s)	83, 228, 458, 878
BstACI	GRCGYC	2 cut(s)	746, 936
BstAUI	TGTACA	2 cut(s)	324, 336
BstBAI	YACGTR	2 cut(s)	8, 766
BstDEI	CTNAG	3 cut(s)	593, 785, 825
BstF5I	GGATG	5 cut(s)	23, 88, 479, 826, 928
BstH2I	RGCGCY	1 cut(s)	515
BstHHI	GCGC	2 cut(s)	71, 514
BstKTI	GATC	3 cut(s)	420, 480, 540
BstMAI	GTCTC	2 cut(s)	311, 683
BstMBI	GATC	3 cut(s)	417, 477, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	356, 549
BstSCI	CCNGG	2 cut(s)	462, 751
BstSNI	TACGTA	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	521
BstV2I	GAAGAC	2 cut(s)	749, 858
BsuRI	GGCC	1 cut(s)	149
BtgZI	GCGATG	2 cut(s)	313, 849
BtsCI	GGATG	5 cut(s)	23, 88, 479, 826, 928
BtsI	GCAGTG	1 cut(s)	972
BtsIMutI	CAGTG	4 cut(s)	159, 590, 883, 972
CfoI	GCGC	2 cut(s)	71, 514
Cfr13I	GGNCC	2 cut(s)	148, 755
CseI	GACGC	1 cut(s)	754
Csp6I	GTAC	3 cut(s)	5, 325, 337
CviAII	CATG	3 cut(s)	136, 334, 960
CviJI	RGCY	2 cut(s)	149, 573
CviKI_1	RGCY	2 cut(s)	149, 573
CviQI	GTAC	3 cut(s)	5, 325, 337
DdeI	CTNAG	3 cut(s)	593, 785, 825
DpnI	GATC	3 cut(s)	419, 479, 539
DpnII	GATC	3 cut(s)	417, 477, 537
DraIII	CACNNNGTG	1 cut(s)	596
DrdI	GACNNNNNNGTC	1 cut(s)	845
DriI	GACNNNNNGTC	1 cut(s)	626
DseDI	GACNNNNNNGTC	1 cut(s)	845
Eam1105I	GACNNNNNGTC	1 cut(s)	626
Eco105I	TACGTA	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	683
Eco47I	GGWCC	1 cut(s)	755
Eco57I	CTGAAG	3 cut(s)	284, 668, 825
Eco72I	CACGTG	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	92
ErhI	CCWWGG	1 cut(s)	92
FaeI	CATG	3 cut(s)	139, 337, 963
FaqI	GGGAC	3 cut(s)	417, 446, 768
FatI	CATG	3 cut(s)	135, 333, 959
FauNDI	CATATG	1 cut(s)	655
FbaI	TGATCA	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	5 cut(s)	10, 75, 486, 833, 935
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	116
GlaI	GCGC	2 cut(s)	70, 513
GluI	GCNGC	1 cut(s)	510
HaeII	RGCGCY	1 cut(s)	515
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	3 cut(s)	169, 464, 752
HgaI	GACGC	1 cut(s)	754
HhaI	GCGC	2 cut(s)	71, 514
Hin1I	GRCGYC	2 cut(s)	746, 936
Hin1II	CATG	3 cut(s)	139, 337, 963
Hin6I	GCGC	2 cut(s)	69, 512
HinP1I	GCGC	2 cut(s)	69, 512
HincII	GTYRAC	1 cut(s)	86
HindII	GTYRAC	1 cut(s)	86
HinfI	GANTC	3 cut(s)	405, 621, 781
HpaII	CCGG	3 cut(s)	169, 464, 752
HphI	GGTGA	3 cut(s)	547, 925, 944
Hpy166II	GTNNAC	3 cut(s)	86, 142, 250
Hpy188I	TCNGA	5 cut(s)	305, 473, 687, 786, 805
Hpy8I	GTNNAC	3 cut(s)	86, 142, 250
Hpy99I	CGWCG	1 cut(s)	629
HpyAV	CCTTC	3 cut(s)	45, 310, 692
HpyCH4III	ACNGT	4 cut(s)	83, 228, 458, 878
HpyCH4IV	ACGT	4 cut(s)	7, 495, 765, 936
HpyCH4V	TGCA	4 cut(s)	104, 350, 509, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	356, 549
HpyF3I	CTNAG	3 cut(s)	593, 785, 825
HpySE526I	ACGT	4 cut(s)	7, 495, 765, 936
Hsp92I	GRCGYC	2 cut(s)	746, 936
Hsp92II	CATG	3 cut(s)	139, 337, 963
HspAI	GCGC	2 cut(s)	69, 512
Ksp22I	TGATCA	1 cut(s)	417
Kzo9I	GATC	3 cut(s)	417, 477, 537
LpnPI	CCDG	7 cut(s)	72, 165, 182, 203, 477, 518, 765
Lsp1109I	GCAGC	1 cut(s)	521
LweI	GCATC	2 cut(s)	811, 913
MaeI	CTAG	1 cut(s)	116
MaeII	ACGT	4 cut(s)	7, 495, 765, 936
MaeIII	GTNAC	2 cut(s)	766, 932
MalI	GATC	3 cut(s)	419, 479, 539
MboI	GATC	3 cut(s)	417, 477, 537
MboII	GAAGA	3 cut(s)	574, 754, 863
MfeI	CAATTG	1 cut(s)	941
MhlI	GDGCHC	1 cut(s)	791
MluCI	AATT	6 cut(s)	126, 291, 368, 557, 648, 941
MlyI	GAGTC	2 cut(s)	399, 615
MnlI	CCTC	2 cut(s)	715, 759
MseI	TTAA	2 cut(s)	294, 492
MslI	CAYNNNNRTG	1 cut(s)	332
MspI	CCGG	3 cut(s)	169, 464, 752
MspR9I	CCNGG	2 cut(s)	464, 753
MunI	CAATTG	1 cut(s)	941
Mva1269I	GAATGC	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	356, 549
NciI	CCSGG	2 cut(s)	464, 753
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	3 cut(s)	417, 477, 537
NlaIII	CATG	3 cut(s)	139, 337, 963
NlaIV	GGNNCC	2 cut(s)	150, 756
NmuCI	GTSAC	2 cut(s)	766, 932
PctI	GAATGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	781
PflMI	CCANNNNNTGG	1 cut(s)	243
PfoI	TCCNGGA	1 cut(s)	751
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	2 cut(s)	399, 615
PmaCI	CACGTG	1 cut(s)	766
PmlI	CACGTG	1 cut(s)	766
PpsI	GAGTC	2 cut(s)	399, 615
Ppu21I	YACGTR	2 cut(s)	8, 766
Psp1406I	AACGTT	1 cut(s)	495
PspCI	CACGTG	1 cut(s)	766
PspN4I	GGNNCC	2 cut(s)	150, 756
PspPI	GGNCC	2 cut(s)	148, 755
RsaI	GTAC	3 cut(s)	6, 326, 338
RsaNI	GTAC	3 cut(s)	5, 325, 337
RseI	CAYNNNNRTG	1 cut(s)	332
SaqAI	TTAA	2 cut(s)	294, 492
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	3 cut(s)	417, 477, 537
Sau96I	GGNCC	2 cut(s)	148, 755
SchI	GAGTC	2 cut(s)	399, 615
ScrFI	CCNGG	2 cut(s)	464, 753
SduI	GDGCHC	1 cut(s)	791
SfaNI	GCATC	2 cut(s)	811, 913
SinI	GGWCC	1 cut(s)	755
SmiMI	CAYNNNNRTG	1 cut(s)	332
SnaBI	TACGTA	1 cut(s)	8
Sse9I	AATT	6 cut(s)	126, 291, 368, 557, 648, 941
SsiI	CCGC	3 cut(s)	77, 541, 715
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	462, 751
StyI	CCWWGG	1 cut(s)	92
TaaI	ACNGT	4 cut(s)	83, 228, 458, 878
TaiI	ACGT	4 cut(s)	10, 498, 768, 939
TaqI	TCGA	2 cut(s)	188, 849
TasI	AATT	6 cut(s)	126, 291, 368, 557, 648, 941
TatI	WGTACW	2 cut(s)	324, 336
TfiI	GAWTC	1 cut(s)	781
Tru1I	TTAA	2 cut(s)	294, 492
Tru9I	TTAA	2 cut(s)	294, 492
TscAI	CASTG	4 cut(s)	159, 597, 883, 972
TseFI	GTSAC	2 cut(s)	766, 932
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	2 cut(s)	766, 932
TspDTI	ATGAA	8 cut(s)	274, 410, 434, 631, 642, 800, 903, 969
TspGWI	ACGGA	1 cut(s)	196
TspRI	CASTG	4 cut(s)	159, 597, 883, 972
Van91I	CCANNNNNTGG	1 cut(s)	243
VpaK11BI	GGWCC	1 cut(s)	755
XapI	RAATTY	2 cut(s)	368, 557
XmiI	GTMKAC	1 cut(s)	249
XspI	CTAG	1 cut(s)	116
ZraI	GACGTC	1 cut(s)	937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.