Rorug04G0236600

Mediates both low-affinity uptake and efflux of sugar across the membrane

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0004778
Physical Location & Seq
Reverse (-)
40290033 .. 40291552
1520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0236600.1

Sequence Viewer

Length: 843 bp
ATGCTTGCAAAGGCCAGTTGGAGAATTTGGCAAGCTGATCCTGGTCTTTGGGCTGCCATCTATAAAGAAAAATACTTGCAGAACAATTGCTTAGCTGATAATAATTACAAGCCTCCAATGGATTGCTCTAGTACTTGGAGAAGTATCTCTCATGGTGCTGAGTTGCTCAGACAAGGTCTTAAATGGCGTGTGGGTGATGGAAAAACCATAAAGTTCTGGTATGATCCCTGGCTAATCTCTACTGCCCTTATTTCTCATGCTCTCCCTAATGCTGTTATAAATATCAATGCCACTGTTTGTGACTTCTGGGATGAGTTTGGATGGAACATTGATTTGCTCTCTTCTGTTATTCCCACTCATCTGGTTGATTTGGCTATAAACACTCCGACTGGTTTTGAGGGGTGTGGGGATGATGTTAAAATCTGGGCTGCTACTGGTAATGGCTGCTTCACTGTTAAGTCTGCCTACAACTCAATTTTTGATCTCTCCAAGCCTACTGACCCTCTTTGGAAAACTATTTGGAGCTTTGATATTCCTCCTAAACAAAAGACATTCTTATGGGTGATTCTTCACAAGAAGTTGTTGACAAATATCCAAAGAGCTAGGCGTGGCTTCACCAATATTAGCACTTGTTCCATCTGTAATTATGTTGATGAGACTCTTCTTCACCTTTTCAGAGACTGCCCCAGATCGAAACTTATCTGGTCTTCTATTTCTAAATCCAGCTCCATCTCGAACACTTTTGTCCTCGATTGGAATGACTGGATCACTGCTCAACTGCACTGCAAGTCTCTAACTCATAAAGGCCTAGAAGGACTGGGAATGCTGCTGTTCCTTAGCTAG

Protein Analysis

280

Amino Acids

31.85

Weight (kDa)

8.52

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 150 - 235 7.9e-20 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 278
AclWI GGATC 3 cut(s) 32, 218, 773
AcsI RAATTY 1 cut(s) 24
AfaI GTAC 1 cut(s) 133
AjnI CCWGG 2 cut(s) 40, 227
AluBI AGCT 6 cut(s) 35, 95, 525, 602, 726, 840
AluI AGCT 6 cut(s) 35, 95, 525, 602, 726, 840
Alw26I GTCTC 3 cut(s) 650, 672, 795
AlwI GGATC 3 cut(s) 32, 218, 773
AlwNI CAGNNNCTG 1 cut(s) 681
AoxI GGCC 2 cut(s) 12, 805
ApeKI GCWGC 4 cut(s) 53, 428, 444, 826
ApoI RAATTY 1 cut(s) 24
AsuHPI GGTGA 4 cut(s) 206, 574, 607, 659
BbsI GAAGAC 1 cut(s) 699
BbvI GCAGC 4 cut(s) 40, 415, 431, 813
BccI CCATC 5 cut(s) 65, 191, 315, 644, 737
BciT130I CCWGG 2 cut(s) 42, 229
BcoDI GTCTC 3 cut(s) 650, 672, 795
BfaI CTAG 4 cut(s) 129, 603, 809, 841
BisI GCNGC 4 cut(s) 54, 429, 445, 827
BlpI GCTNAGC 1 cut(s) 91
BlsI GCNGC 4 cut(s) 55, 430, 446, 828
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 2 cut(s) 42, 229
BmrFI CCNGG 2 cut(s) 42, 229
BmrI ACTGGG 1 cut(s) 827
BmuI ACTGGG 1 cut(s) 827
BpiI GAAGAC 1 cut(s) 699
Bpu10I CCTNAGC 1 cut(s) 836
Bpu1102I GCTNAGC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 227
Bse1I ACTGG 5 cut(s) 15, 394, 439, 767, 822
BseBI CCWGG 2 cut(s) 42, 229
BseDI CCNNGG 1 cut(s) 227
BseGI GGATG 3 cut(s) 316, 326, 415
BseMII CTCAG 2 cut(s) 150, 181
BseNI ACTGG 5 cut(s) 15, 394, 439, 767, 822
BseXI GCAGC 4 cut(s) 40, 415, 431, 813
BsgI GTGCAG 1 cut(s) 764
BshFI GGCC 2 cut(s) 14, 807
BsmAI GTCTC 3 cut(s) 650, 672, 795
BsmI GAATGC 1 cut(s) 828
BsnI GGCC 2 cut(s) 14, 807
Bsp143I GATC 5 cut(s) 37, 223, 481, 689, 765
Bsp1720I GCTNAGC 1 cut(s) 91
BspANI GGCC 2 cut(s) 14, 807
BspCNI CTCAG 2 cut(s) 151, 180
BspPI GGATC 3 cut(s) 32, 218, 773
BsrI ACTGG 5 cut(s) 15, 394, 439, 767, 822
BssECI CCNNGG 1 cut(s) 227
BssMI GATC 5 cut(s) 37, 223, 481, 689, 765
Bst2UI CCWGG 2 cut(s) 42, 229
Bst4CI ACNGT 2 cut(s) 295, 454
Bst6I CTCTTC 2 cut(s) 346, 666
BstC8I GCNNGC 2 cut(s) 6, 33
BstDEI CTNAG 4 cut(s) 91, 159, 167, 836
BstF5I GGATG 3 cut(s) 316, 326, 415
BstKTI GATC 5 cut(s) 40, 226, 484, 692, 768
BstMAI GTCTC 3 cut(s) 650, 672, 795
BstMBI GATC 5 cut(s) 37, 223, 481, 689, 765
BstNI CCWGG 2 cut(s) 42, 229
BstSCI CCNGG 2 cut(s) 40, 227
BstV1I GCAGC 4 cut(s) 40, 415, 431, 813
BstV2I GAAGAC 1 cut(s) 699
BstXI CCANNNNNNTGG 1 cut(s) 361
BsuRI GGCC 2 cut(s) 14, 807
BtsCI GGATG 3 cut(s) 316, 326, 415
BtsI GCAGTG 2 cut(s) 768, 781
BtsIMutI CAGTG 4 cut(s) 291, 450, 768, 781
Cac8I GCNNGC 2 cut(s) 6, 33
CaiI CAGNNNCTG 1 cut(s) 681
Csp6I GTAC 1 cut(s) 132
CviAII CATG 2 cut(s) 152, 257
CviQI GTAC 1 cut(s) 132
DdeI CTNAG 4 cut(s) 91, 159, 167, 836
DpnI GATC 5 cut(s) 39, 225, 483, 691, 767
DpnII GATC 5 cut(s) 37, 223, 481, 689, 765
Eam1104I CTCTTC 2 cut(s) 346, 666
EarI CTCTTC 2 cut(s) 346, 666
Eco147I AGGCCT 1 cut(s) 807
EcoRII CCWGG 2 cut(s) 40, 227
FaeI CATG 2 cut(s) 155, 260
FalI AAGNNNNNCTT 2 cut(s) 539, 571
FatI CATG 2 cut(s) 151, 256
Fnu4HI GCNGC 4 cut(s) 54, 429, 445, 827
FokI GGATG 3 cut(s) 323, 333, 422
Fsp4HI GCNGC 4 cut(s) 54, 429, 445, 827
FspBI CTAG 4 cut(s) 129, 603, 809, 841
GluI GCNGC 4 cut(s) 54, 429, 445, 827
HaeIII GGCC 2 cut(s) 14, 807
Hin1II CATG 2 cut(s) 155, 260
HincII GTYRAC 1 cut(s) 585
HindII GTYRAC 1 cut(s) 585
HinfI GANTC 2 cut(s) 565, 658
HphI GGTGA 4 cut(s) 206, 574, 607, 659
Hpy166II GTNNAC 1 cut(s) 585
Hpy188I TCNGA 3 cut(s) 170, 387, 677
Hpy188III TCNNGA 1 cut(s) 733
Hpy8I GTNNAC 1 cut(s) 585
HpyAV CCTTC 1 cut(s) 806
HpyCH4III ACNGT 2 cut(s) 295, 454
HpyCH4V TGCA 4 cut(s) 8, 79, 781, 786
HpyF3I CTNAG 4 cut(s) 91, 159, 167, 836
Hsp92II CATG 2 cut(s) 155, 260
Kzo9I GATC 5 cut(s) 37, 223, 481, 689, 765
LmnI GCTCC 2 cut(s) 522, 731
Lsp1109I GCAGC 4 cut(s) 40, 415, 431, 813
MaeI CTAG 4 cut(s) 129, 603, 809, 841
MaeIII GTNAC 1 cut(s) 299
MalI GATC 5 cut(s) 39, 225, 483, 691, 767
MboI GATC 5 cut(s) 37, 223, 481, 689, 765
MboII GAAGA 5 cut(s) 333, 560, 653, 656, 699
MfeI CAATTG 1 cut(s) 85
MluCI AATT 5 cut(s) 24, 85, 103, 474, 643
MlyI GAGTC 1 cut(s) 652
MmeI TCCRAC 1 cut(s) 410
MnlI CCTC 5 cut(s) 123, 391, 513, 546, 758
MseI TTAA 3 cut(s) 180, 417, 456
MslI CAYNNNNRTG 1 cut(s) 556
MspR9I CCNGG 2 cut(s) 42, 229
MunI CAATTG 1 cut(s) 85
Mva1269I GAATGC 1 cut(s) 828
MvaI CCWGG 2 cut(s) 42, 229
NdeII GATC 5 cut(s) 37, 223, 481, 689, 765
NlaIII CATG 2 cut(s) 155, 260
NmuCI GTSAC 1 cut(s) 299
PceI AGGCCT 1 cut(s) 807
PctI GAATGC 1 cut(s) 828
PfeI GAWTC 1 cut(s) 565
PflFI GACNNNGTC 1 cut(s) 174
PkrI GCNGC 4 cut(s) 55, 430, 446, 828
PleI GAGTC 1 cut(s) 652
PpsI GAGTC 1 cut(s) 652
PsiI TTATAA 1 cut(s) 278
Psp6I CCWGG 2 cut(s) 40, 227
PspGI CCWGG 2 cut(s) 40, 227
PstNI CAGNNNCTG 1 cut(s) 681
PsyI GACNNNGTC 1 cut(s) 174
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 556
SaqAI TTAA 3 cut(s) 180, 417, 456
SatI GCNGC 4 cut(s) 54, 429, 445, 827
Sau3AI GATC 5 cut(s) 37, 223, 481, 689, 765
ScaI AGTACT 1 cut(s) 133
SchI GAGTC 1 cut(s) 652
ScrFI CCNGG 2 cut(s) 42, 229
SetI ASST 8 cut(s) 37, 97, 178, 527, 604, 672, 728, 842
SmiMI CAYNNNNRTG 1 cut(s) 556
Sse9I AATT 5 cut(s) 24, 85, 103, 474, 643
SseBI AGGCCT 1 cut(s) 807
SspI AATATT 1 cut(s) 622
SspMI CTAG 4 cut(s) 129, 603, 809, 841
StuI AGGCCT 1 cut(s) 807
StyD4I CCNGG 2 cut(s) 40, 227
TaaI ACNGT 2 cut(s) 295, 454
TaqI TCGA 3 cut(s) 692, 734, 750
TasI AATT 5 cut(s) 24, 85, 103, 474, 643
TatI WGTACW 1 cut(s) 131
TfiI GAWTC 1 cut(s) 565
Tru1I TTAA 3 cut(s) 180, 417, 456
Tru9I TTAA 3 cut(s) 180, 417, 456
TscAI CASTG 4 cut(s) 298, 457, 775, 788
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 4 cut(s) 53, 428, 444, 826
Tsp45I GTSAC 1 cut(s) 299
TspRI CASTG 4 cut(s) 298, 457, 775, 788
Tth111I GACNNNGTC 1 cut(s) 174
XapI RAATTY 1 cut(s) 24
XspI CTAG 4 cut(s) 129, 603, 809, 841
ZrmI AGTACT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.