Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000830.1

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Reverse (-)

105718 .. 106935

Gene Structure 1218 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000830.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggtttacttaagcccagtgccaacgttttaccggatttacagaaataaatcgactgaaggtttccaatcggtgccatatctggtagcactgtttagctccacgctttggctctactatgccatgctgaagcaaaatgttgtgcttctcatcacagttaacaccttcggaagtgtgatggagactgtgtacatcgccatgtacattctttatgcaacaaacacttcaaggaaattcactatcaagttattcgggtttatgaacttgggactcttctccttgatcattgtcctgttacactatacattacatagtcaataccgtgccccggttctcggatggatcaacgttgccattaccgtttgtgcttttgcagcacctttgagtattgtggcacaggtgatccgcacagaaagtgttgaatttatgccgttcagcttatcattcttccttacattgagtggcatgttgtggtttgcgtatggactgttcctcaaggacatacgcatagcaatgttgttctatgccatatacagaaaccgaaagctagtcttagttgatatggatgaaaaccttccggcaccggagcacgtgacaaacgttgtgattctgagcactatcgcaacatccaaagttcattcggtgaatgctaagccgtgcgatggcgatgacgtcgaagacggcaaagatggaaataaggacagtgatggcgattgcgtggtggtggtggatgtggatgcggatgcttcgggtgatcaccttccactgaaatctgatgaatcatgtgtagtgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

264

Amino Acids

29.57

Weight (kDa)

5.49

Isoelectric Point (pI)

35.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	675
AccB1I	GGYRCC	2 cut(s)	73, 580
AccB7I	CCANNNNNTGG	1 cut(s)	108
AciI	CCGC	2 cut(s)	406, 740
AclI	AACGTT	3 cut(s)	26, 348, 600
AclWI	GGATC	2 cut(s)	350, 397
AcsI	RAATTY	2 cut(s)	233, 422
AcuI	CTGAAG	2 cut(s)	78, 149
AcvI	CACGTG	1 cut(s)	592
AcyI	GRCGYC	1 cut(s)	672
AfaI	GTAC	2 cut(s)	191, 203
AfiI	CCNNNNNNNGG	4 cut(s)	108, 328, 335, 662
AflII	CTTAAG	1 cut(s)	10
AgsI	TTSAA	2 cut(s)	228, 422
AluBI	AGCT	3 cut(s)	99, 438, 547
AluI	AGCT	3 cut(s)	99, 438, 547
Alw21I	GWGCWC	2 cut(s)	591, 617
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	2 cut(s)	350, 397
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	2 cut(s)	233, 422
Asp700I	GAANNNNTTC	1 cut(s)	573
AsuC2I	CCSGG	1 cut(s)	329
AsuHPI	GGTGA	4 cut(s)	412, 655, 749, 764
BaeGI	GKGCMC	1 cut(s)	328
BanI	GGYRCC	2 cut(s)	73, 580
BbrPI	CACGTG	1 cut(s)	592
BbsI	GAAGAC	1 cut(s)	684
Bbv12I	GWGCWC	2 cut(s)	591, 617
BbvI	GCAGC	1 cut(s)	386
BccI	CCATC	5 cut(s)	172, 333, 656, 683, 701
BceAI	ACGGC	3 cut(s)	415, 640, 697
BclI	TGATCA	2 cut(s)	282, 754
BcnI	CCSGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	176
BfaI	CTAG	1 cut(s)	548
BfrI	CTTAAG	1 cut(s)	10
BisI	GCNGC	1 cut(s)	375
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	1 cut(s)	376
Bme1390I	CCNGG	1 cut(s)	329
BmiI	GGNNCC	2 cut(s)	75, 582
BmrFI	CCNGG	1 cut(s)	329
BmrI	ACTGGG	1 cut(s)	11
BmsI	GCATC	2 cut(s)	727, 733
BmuI	ACTGGG	1 cut(s)	11
BpiI	GAAGAC	1 cut(s)	684
Bpu1102I	GCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	1 cut(s)	329
BsaAI	YACGTR	1 cut(s)	592
BsaHI	GRCGYC	1 cut(s)	672
BsaJI	CCNNGG	1 cut(s)	327
BsaWI	WCCGGW	2 cut(s)	33, 583
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 328, 335, 662
Bse1I	ACTGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	519
BseDI	CCNNGG	1 cut(s)	327
BseGI	GGATG	6 cut(s)	344, 571, 626, 736, 742, 748
BseLI	CCNNNNNNNGG	4 cut(s)	108, 328, 335, 662
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	1 cut(s)	17
BseSI	GKGCMC	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	386
BshNI	GGYRCC	2 cut(s)	73, 580
BsiHKAI	GWGCWC	2 cut(s)	591, 617
BsiSI	CCGG	4 cut(s)	34, 329, 578, 584
BslFI	GGGAC	1 cut(s)	282
BslI	CCNNNNNNNGG	4 cut(s)	108, 328, 335, 662
BsmAI	GTCTC	1 cut(s)	176
BsmFI	GGGAC	1 cut(s)	282
BsmI	GAATGC	1 cut(s)	652
Bsp1286I	GDGCHC	3 cut(s)	328, 591, 617
Bsp1407I	TGTACA	2 cut(s)	189, 201
Bsp143I	GATC	4 cut(s)	282, 342, 402, 754
Bsp1720I	GCTNAGC	1 cut(s)	651
BspACI	CCGC	2 cut(s)	406, 740
BspCNI	CTCAG	1 cut(s)	603
BspLI	GGNNCC	2 cut(s)	75, 582
BspPI	GGATC	2 cut(s)	350, 397
BspT107I	GGYRCC	2 cut(s)	73, 580
BspTI	CTTAAG	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	519
BsrGI	TGTACA	2 cut(s)	189, 201
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	327
BssMI	GATC	4 cut(s)	282, 342, 402, 754
BssNI	GRCGYC	1 cut(s)	672
Bst4CI	ACNGT	7 cut(s)	93, 157, 187, 323, 361, 489, 704
Bst6I	CTCTTC	1 cut(s)	278
BstACI	GRCGYC	1 cut(s)	672
BstAFI	CTTAAG	1 cut(s)	10
BstAUI	TGTACA	2 cut(s)	189, 201
BstBAI	YACGTR	1 cut(s)	592
BstDEI	CTNAG	3 cut(s)	553, 611, 651
BstF5I	GGATG	6 cut(s)	344, 571, 626, 736, 742, 748
BstKTI	GATC	4 cut(s)	285, 345, 405, 757
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	4 cut(s)	282, 342, 402, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNSI	RCATGY	1 cut(s)	469
BstSCI	CCNGG	1 cut(s)	327
BstSLI	GKGCMC	1 cut(s)	328
BstV1I	GCAGC	1 cut(s)	386
BstV2I	GAAGAC	1 cut(s)	684
BtgZI	GCGATG	3 cut(s)	178, 675, 681
BtsCI	GGATG	6 cut(s)	344, 571, 626, 736, 742, 748
BtsIMutI	CAGTG	4 cut(s)	24, 89, 709, 764
Csp6I	GTAC	2 cut(s)	190, 202
CviAII	CATG	4 cut(s)	124, 199, 466, 783
CviJI	RGCY	6 cut(s)	15, 99, 112, 438, 547, 655
CviKI_1	RGCY	6 cut(s)	15, 99, 112, 438, 547, 655
CviQI	GTAC	2 cut(s)	190, 202
DdeI	CTNAG	3 cut(s)	553, 611, 651
DpnI	GATC	4 cut(s)	284, 344, 404, 756
DpnII	GATC	4 cut(s)	282, 342, 402, 754
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
Eco57I	CTGAAG	2 cut(s)	78, 149
Eco72I	CACGTG	1 cut(s)	592
FaeI	CATG	4 cut(s)	127, 202, 469, 786
FalI	AAGNNNNNCTT	2 cut(s)	536, 568
FaqI	GGGAC	1 cut(s)	282
FatI	CATG	4 cut(s)	123, 198, 465, 782
FbaI	TGATCA	2 cut(s)	282, 754
Fnu4HI	GCNGC	1 cut(s)	375
FokI	GGATG	6 cut(s)	351, 578, 613, 743, 749, 755
Fsp4HI	GCNGC	1 cut(s)	375
FspBI	CTAG	1 cut(s)	548
GluI	GCNGC	1 cut(s)	375
HapII	CCGG	4 cut(s)	34, 329, 578, 584
Hin1I	GRCGYC	1 cut(s)	672
Hin1II	CATG	4 cut(s)	127, 202, 469, 786
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	3 cut(s)	270, 607, 779
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	4 cut(s)	34, 329, 578, 584
HphI	GGTGA	4 cut(s)	412, 655, 749, 764
Hpy166II	GTNNAC	3 cut(s)	7, 160, 190
Hpy188I	TCNGA	4 cut(s)	170, 338, 612, 775
Hpy8I	GTNNAC	3 cut(s)	7, 160, 190
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	4 cut(s)	53, 175, 584, 770
HpyCH4III	ACNGT	7 cut(s)	93, 157, 187, 323, 361, 489, 704
HpyCH4IV	ACGT	5 cut(s)	26, 348, 591, 600, 672
HpyCH4V	TGCA	2 cut(s)	215, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	3 cut(s)	553, 611, 651
HpySE526I	ACGT	5 cut(s)	26, 348, 591, 600, 672
Hsp92I	GRCGYC	1 cut(s)	672
Hsp92II	CATG	4 cut(s)	127, 202, 469, 786
Ksp22I	TGATCA	2 cut(s)	282, 754
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	4 cut(s)	282, 342, 402, 754
LmnI	GCTCC	2 cut(s)	104, 586
LpnPI	CCDG	8 cut(s)	30, 47, 68, 305, 342, 383, 591, 597
Lsp1109I	GCAGC	1 cut(s)	386
LweI	GCATC	2 cut(s)	727, 733
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	5 cut(s)	26, 348, 591, 600, 672
MaeIII	GTNAC	2 cut(s)	294, 592
MalI	GATC	4 cut(s)	284, 344, 404, 756
MboI	GATC	4 cut(s)	282, 342, 402, 754
MboII	GAAGA	3 cut(s)	265, 439, 689
MhlI	GDGCHC	3 cut(s)	328, 591, 617
MluCI	AATT	2 cut(s)	233, 422
MlyI	GAGTC	1 cut(s)	264
MnlI	CCTC	1 cut(s)	503
MroXI	GAANNNNTTC	1 cut(s)	573
MseI	TTAA	2 cut(s)	11, 159
MslI	CAYNNNNRTG	2 cut(s)	197, 512
MspCI	CTTAAG	1 cut(s)	10
MspI	CCGG	4 cut(s)	34, 329, 578, 584
MspR9I	CCNGG	1 cut(s)	329
Mva1269I	GAATGC	1 cut(s)	652
MwoI	GCNNNNNNNGC	1 cut(s)	374
NciI	CCSGG	1 cut(s)	329
NdeII	GATC	4 cut(s)	282, 342, 402, 754
NlaIII	CATG	4 cut(s)	127, 202, 469, 786
NlaIV	GGNNCC	2 cut(s)	75, 582
NmuCI	GTSAC	1 cut(s)	592
NspI	RCATGY	1 cut(s)	469
PcsI	WCGNNNNNNNCGW	1 cut(s)	597
PctI	GAATGC	1 cut(s)	652
PdmI	GAANNNNTTC	1 cut(s)	573
PfeI	GAWTC	2 cut(s)	607, 779
PflMI	CCANNNNNTGG	1 cut(s)	108
PkrI	GCNGC	1 cut(s)	376
PleI	GAGTC	1 cut(s)	264
PmaCI	CACGTG	1 cut(s)	592
PmlI	CACGTG	1 cut(s)	592
PpsI	GAGTC	1 cut(s)	264
Ppu21I	YACGTR	1 cut(s)	592
Psp1406I	AACGTT	3 cut(s)	26, 348, 600
PspCI	CACGTG	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	75, 582
PsrI	GAACNNNNNNTAC	2 cut(s)	473, 505
RsaI	GTAC	2 cut(s)	191, 203
RsaNI	GTAC	2 cut(s)	190, 202
RseI	CAYNNNNRTG	2 cut(s)	197, 512
SaqAI	TTAA	2 cut(s)	11, 159
SatI	GCNGC	1 cut(s)	375
Sau3AI	GATC	4 cut(s)	282, 342, 402, 754
SchI	GAGTC	1 cut(s)	264
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	3 cut(s)	328, 591, 617
SfaNI	GCATC	2 cut(s)	727, 733
SmiMI	CAYNNNNRTG	2 cut(s)	197, 512
SmlI	CTYRAG	2 cut(s)	10, 494
SmoI	CTYRAG	2 cut(s)	10, 494
Sse9I	AATT	2 cut(s)	233, 422
SsiI	CCGC	2 cut(s)	406, 740
SspMI	CTAG	1 cut(s)	548
StyD4I	CCNGG	1 cut(s)	327
TaaI	ACNGT	7 cut(s)	93, 157, 187, 323, 361, 489, 704
TaiI	ACGT	5 cut(s)	29, 351, 594, 603, 675
TaqI	TCGA	2 cut(s)	53, 675
TasI	AATT	2 cut(s)	233, 422
TatI	WGTACW	2 cut(s)	189, 201
TfiI	GAWTC	2 cut(s)	607, 779
Tru1I	TTAA	2 cut(s)	11, 159
Tru9I	TTAA	2 cut(s)	11, 159
TscAI	CASTG	4 cut(s)	24, 96, 709, 771
TseFI	GTSAC	1 cut(s)	592
TseI	GCWGC	1 cut(s)	374
Tsp45I	GTSAC	1 cut(s)	592
TspDTI	ATGAA	4 cut(s)	275, 582, 626, 792
TspRI	CASTG	4 cut(s)	24, 96, 709, 771
Van91I	CCANNNNNTGG	1 cut(s)	108
Vha464I	CTTAAG	1 cut(s)	10
XapI	RAATTY	2 cut(s)	233, 422
XceI	RCATGY	1 cut(s)	469
XmnI	GAANNNNTTC	1 cut(s)	573
XspI	CTAG	1 cut(s)	548
ZraI	GACGTC	1 cut(s)	673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.