Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

45912339 .. 45918171

Gene Structure 5833 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00364740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGGCGGCTTCGGTAGGCCGTCTGGGGGTTCTTGGCTGCATGCAATATGCCCAGCCAACGTTTTACCGGATTTACAGAAATAAATCGACTGAAGGTTTCCAATCGGTGCCATATCTGGCACAGGTGATCCGCACAGAAAGTGTTGAATTTATGCCGTTCAGCTTATCATTCTTCCTTACATTGAGTGGTGTGCTGTGGTTTGCGTATGGACTGTTCCTCCAGGACATACGCATAGCACTTCCAAACGGGTTAGGTTTTGTCTTGGGTCTACTTCAAATGCTGTTCTACGCCATATACAGAAACCGAAAGCCAGTCTTAGTTGATATGGATGAAAAGCTTCCGGCACCGGAGCACGTGACAAACGTTGCGATTCTAAGCACTATCGCAACATCCGAAGTTCATTCGGTGAATGCTAAGCCGTGCGATGGCAATGACGTCGAAGACAGCAAAGATGGAAATAAGGAAGGTGATGGCGATTGCATGGTGGTGGTGGATGTACGTGGATGCTTCGGTGGAAAATCAAACTTTCCATTTATATCTACATATGTAGGTAAGGCGCAATGTAGCTATTTAGCCAATGTAAGTAGAGTATCCAAAACTGTGAAAACAATGTTGTTTGTGTGCTTGTTGGTGGCTGCAGTGACATTGGTTGTTCCAGTAGCTCAAGGGACTGTTGGTCTTGGAGGCCTGTTCGGCTATCTTCTTGGTCAAATGACTCTAATCCGCATCCAAGGCACCGTCTTTTGCACTGCCAATGGCAATGCCACTGTTGGTTCCGGTGTCGTCATTGTTATCCCACCATTCGCAAGTAAGATAATTAATGACCAATTAGTGCAACCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

281

Amino Acids

30.36

Weight (kDa)

8.43

Isoelectric Point (pI)

33.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	36 - 103	3e-18	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	438
AccB1I	GGYRCC	3 cut(s)	106, 343, 734
AccI	GTMKAC	1 cut(s)	268
AciI	CCGC	3 cut(s)	5, 130, 724
AclI	AACGTT	2 cut(s)	59, 363
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	111
AcvI	CACGTG	1 cut(s)	355
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	1 cut(s)	498
AfiI	CCNNNNNNNGG	2 cut(s)	25, 425
AgsI	TTSAA	2 cut(s)	146, 275
AhdI	GACNNNNNGTC	1 cut(s)	675
AjnI	CCWGG	1 cut(s)	219
AluBI	AGCT	4 cut(s)	162, 337, 567, 662
AluI	AGCT	4 cut(s)	162, 337, 567, 662
Alw21I	GWGCWC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	121
AoxI	GGCC	2 cut(s)	16, 685
ApeKI	GCWGC	2 cut(s)	36, 635
ApoI	RAATTY	1 cut(s)	146
AseI	ATTAAT	1 cut(s)	819
Asp700I	GAANNNNTTC	1 cut(s)	336
AspLEI	GCGC	1 cut(s)	559
AsuHPI	GGTGA	3 cut(s)	136, 418, 479
BanI	GGYRCC	3 cut(s)	106, 343, 734
BbrPI	CACGTG	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	2 cut(s)	23, 622
BccI	CCATC	3 cut(s)	419, 446, 464
BceAI	ACGGC	3 cut(s)	3, 139, 403
BcgI	CGANNNNNNTGC	2 cut(s)	418, 452
BciT130I	CCWGG	1 cut(s)	221
BciVI	GTATCC	1 cut(s)	601
BfmI	CTRYAG	1 cut(s)	636
BfuI	GTATCC	1 cut(s)	601
BglI	GCCNNNNNGGC	1 cut(s)	693
BisI	GCNGC	3 cut(s)	6, 37, 636
BlpI	GCTNAGC	1 cut(s)	414
BlsI	GCNGC	3 cut(s)	7, 38, 637
Bme1390I	CCNGG	1 cut(s)	221
BmeRI	GACNNNNNGTC	1 cut(s)	675
BmiI	GGNNCC	4 cut(s)	108, 345, 736, 775
BmrFI	CCNGG	1 cut(s)	221
BmsI	GCATC	2 cut(s)	494, 735
BpiI	GAAGAC	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	203
Bpu1102I	GCTNAGC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	648
BsaAI	YACGTR	2 cut(s)	355, 500
BsaHI	GRCGYC	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	730
BsaWI	WCCGGW	3 cut(s)	66, 346, 776
BsaXI	ACNNNNNCTCC	2 cut(s)	201, 231
Bsc4I	CCNNNNNNNGG	2 cut(s)	25, 425
Bse1I	ACTGG	2 cut(s)	311, 656
Bse3DI	GCAATG	3 cut(s)	436, 566, 766
BseBI	CCWGG	1 cut(s)	221
BseDI	CCNNGG	1 cut(s)	730
BseGI	GGATG	5 cut(s)	334, 389, 499, 509, 726
BseLI	CCNNNNNNNGG	2 cut(s)	25, 425
BseMI	GCAATG	3 cut(s)	436, 566, 766
BseNI	ACTGG	2 cut(s)	311, 656
BseXI	GCAGC	2 cut(s)	23, 622
BseYI	CCCAGC	1 cut(s)	51
BshFI	GGCC	2 cut(s)	18, 687
BshNI	GGYRCC	3 cut(s)	106, 343, 734
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	4 cut(s)	67, 341, 347, 777
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	2 cut(s)	25, 425
BsmFI	GGGAC	1 cut(s)	682
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	18, 687
Bsp1286I	GDGCHC	1 cut(s)	354
Bsp143I	GATC	1 cut(s)	126
Bsp1720I	GCTNAGC	1 cut(s)	414
BspACI	CCGC	3 cut(s)	5, 130, 724
BspANI	GGCC	2 cut(s)	18, 687
BspLI	GGNNCC	4 cut(s)	108, 345, 736, 775
BspMAI	CTGCAG	1 cut(s)	640
BspPI	GGATC	1 cut(s)	121
BspT107I	GGYRCC	3 cut(s)	106, 343, 734
BsrDI	GCAATG	3 cut(s)	436, 566, 766
BsrI	ACTGG	2 cut(s)	311, 656
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	1 cut(s)	126
BssNI	GRCGYC	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	730
Bst2UI	CCWGG	1 cut(s)	221
Bst4CI	ACNGT	5 cut(s)	213, 601, 673, 739, 769
BstACI	GRCGYC	1 cut(s)	435
BstBAI	YACGTR	2 cut(s)	355, 500
BstC8I	GCNNGC	1 cut(s)	41
BstDEI	CTNAG	3 cut(s)	316, 374, 414
BstF5I	GGATG	5 cut(s)	334, 389, 499, 509, 726
BstHHI	GCGC	1 cut(s)	559
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	2 cut(s)	693, 732
BstNI	CCWGG	1 cut(s)	221
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	219
BstSFI	CTRYAG	1 cut(s)	636
BstV1I	GCAGC	2 cut(s)	23, 622
BstV2I	GAAGAC	1 cut(s)	447
BsuI	GTATCC	1 cut(s)	601
BsuRI	GGCC	2 cut(s)	18, 687
BtgZI	GCGATG	1 cut(s)	438
BtsCI	GGATG	5 cut(s)	334, 389, 499, 509, 726
BtsI	GCAGTG	2 cut(s)	645, 747
BtsIMutI	CAGTG	3 cut(s)	645, 747, 765
Cac8I	GCNNGC	1 cut(s)	41
CfoI	GCGC	1 cut(s)	559
Csp6I	GTAC	1 cut(s)	497
CviAII	CATG	2 cut(s)	40, 481
CviQI	GTAC	1 cut(s)	497
DdeI	CTNAG	3 cut(s)	316, 374, 414
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
DriI	GACNNNNNGTC	1 cut(s)	675
Eam1105I	GACNNNNNGTC	1 cut(s)	675
Eco130I	CCWWGG	1 cut(s)	730
Eco147I	AGGCCT	1 cut(s)	687
Eco57I	CTGAAG	1 cut(s)	111
Eco72I	CACGTG	1 cut(s)	355
EcoRII	CCWGG	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	730
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	2 cut(s)	43, 484
FalI	AAGNNNNNCTT	2 cut(s)	299, 331
FaqI	GGGAC	1 cut(s)	682
FatI	CATG	2 cut(s)	39, 480
FauNDI	CATATG	1 cut(s)	544
FblI	GTMKAC	1 cut(s)	268
Fnu4HI	GCNGC	3 cut(s)	6, 37, 636
FokI	GGATG	5 cut(s)	341, 376, 506, 516, 713
Fsp4HI	GCNGC	3 cut(s)	6, 37, 636
GlaI	GCGC	1 cut(s)	558
GluI	GCNGC	3 cut(s)	6, 37, 636
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	203
HaeIII	GGCC	2 cut(s)	18, 687
HapII	CCGG	4 cut(s)	67, 341, 347, 777
HhaI	GCGC	1 cut(s)	559
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	2 cut(s)	43, 484
Hin6I	GCGC	1 cut(s)	557
HinP1I	GCGC	1 cut(s)	557
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	370, 715
HpaII	CCGG	4 cut(s)	67, 341, 347, 777
HphI	GGTGA	3 cut(s)	136, 418, 479
Hpy166II	GTNNAC	1 cut(s)	269
Hpy188I	TCNGA	1 cut(s)	394
Hpy8I	GTNNAC	1 cut(s)	269
Hpy99I	CGWCG	1 cut(s)	440
HpyAV	CCTTC	2 cut(s)	86, 458
HpyCH4III	ACNGT	5 cut(s)	213, 601, 673, 739, 769
HpyCH4IV	ACGT	5 cut(s)	59, 354, 363, 435, 499
HpyCH4V	TGCA	6 cut(s)	39, 43, 480, 638, 747, 835
HpyF10VI	GCNNNNNNNGC	2 cut(s)	693, 732
HpyF3I	CTNAG	3 cut(s)	316, 374, 414
HpySE526I	ACGT	5 cut(s)	59, 354, 363, 435, 499
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	2 cut(s)	43, 484
HspAI	GCGC	1 cut(s)	557
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	1 cut(s)	349
Lsp1109I	GCAGC	2 cut(s)	23, 622
LweI	GCATC	2 cut(s)	494, 735
MaeII	ACGT	5 cut(s)	59, 354, 363, 435, 499
MaeIII	GTNAC	2 cut(s)	355, 640
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	3 cut(s)	163, 452, 692
MhlI	GDGCHC	1 cut(s)	354
MluCI	AATT	3 cut(s)	146, 816, 827
MlyI	GAGTC	1 cut(s)	709
MnlI	CCTC	2 cut(s)	227, 677
MroXI	GAANNNNTTC	1 cut(s)	336
MseI	TTAA	1 cut(s)	819
MslI	CAYNNNNRTG	1 cut(s)	485
MspI	CCGG	4 cut(s)	67, 341, 347, 777
MspR9I	CCNGG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	415
MvaI	CCWGG	1 cut(s)	221
MwoI	GCNNNNNNNGC	2 cut(s)	693, 732
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	2 cut(s)	43, 484
NlaIV	GGNNCC	4 cut(s)	108, 345, 736, 775
NmuCI	GTSAC	2 cut(s)	355, 640
NspI	RCATGY	1 cut(s)	43
PaeI	GCATGC	1 cut(s)	43
PceI	AGGCCT	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	2 cut(s)	360, 390
PctI	GAATGC	1 cut(s)	415
PdmI	GAANNNNTTC	1 cut(s)	336
PfeI	GAWTC	1 cut(s)	370
PfoI	TCCNGGA	1 cut(s)	219
PkrI	GCNGC	3 cut(s)	7, 38, 637
PleI	GAGTC	1 cut(s)	709
PmaCI	CACGTG	1 cut(s)	355
PmlI	CACGTG	1 cut(s)	355
PpsI	GAGTC	1 cut(s)	709
Ppu21I	YACGTR	2 cut(s)	355, 500
PshBI	ATTAAT	1 cut(s)	819
Psp1406I	AACGTT	2 cut(s)	59, 363
Psp6I	CCWGG	1 cut(s)	219
PspCI	CACGTG	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	219
PspN4I	GGNNCC	4 cut(s)	108, 345, 736, 775
PsrI	GAACNNNNNNTAC	2 cut(s)	197, 229
PstI	CTGCAG	1 cut(s)	640
RsaI	GTAC	1 cut(s)	498
RsaNI	GTAC	1 cut(s)	497
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	1 cut(s)	819
SatI	GCNGC	3 cut(s)	6, 37, 636
Sau3AI	GATC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	709
ScrFI	CCNGG	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	354
SfaNI	GCATC	2 cut(s)	494, 735
SfcI	CTRYAG	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
SphI	GCATGC	1 cut(s)	43
Sse9I	AATT	3 cut(s)	146, 816, 827
SseBI	AGGCCT	1 cut(s)	687
SsiI	CCGC	3 cut(s)	5, 130, 724
StuI	AGGCCT	1 cut(s)	687
StyD4I	CCNGG	1 cut(s)	219
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	5 cut(s)	213, 601, 673, 739, 769
TaiI	ACGT	5 cut(s)	62, 357, 366, 438, 502
TaqI	TCGA	2 cut(s)	86, 438
TasI	AATT	3 cut(s)	146, 816, 827
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	370
Tru1I	TTAA	1 cut(s)	819
Tru9I	TTAA	1 cut(s)	819
TscAI	CASTG	3 cut(s)	645, 754, 772
TseFI	GTSAC	2 cut(s)	355, 640
TseI	GCWGC	2 cut(s)	36, 635
Tsp45I	GTSAC	2 cut(s)	355, 640
TspDTI	ATGAA	2 cut(s)	345, 389
TspRI	CASTG	3 cut(s)	645, 754, 772
VspI	ATTAAT	1 cut(s)	819
XapI	RAATTY	1 cut(s)	146
XceI	RCATGY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	268
XmnI	GAANNNNTTC	1 cut(s)	336
ZraI	GACGTC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.