Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004778

Physical Location & Seq

Genomic Coordinates Forward (+)

25733918 .. 25736393

Gene Structure 2476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23160.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCAGCTGTAGCAGACGCTCATCATCCCTGGGCCTTTACATTTGGGATATTAGGTAATCTGATTTCCTTCATGGTTTACTTAGCCCCTGTGCCGACGTTTTACCGGATCTTCAAAAAGAAATCGACTGAAGGTTTCCAATCGGTGCCATATCTGGTAGCGCTGTTTAGTGCCACGCTTTGGCTTTACTATGCCATGCTGAAACAAAACGCTGTGCTGCTCATCACAATCAACACTTTCGGAAGTGTGATAGAGACTCTGTACATCGCCATGTACATTGTTTATGCAACCAAGGCTTCAAGGAAATTCACTATCAAGTTACTCGGGTTCATGAACTTGGGACTCTTCTCCTTGATCCTTGTCATTTTACAGTATGCATTTCATAGTGAATACCGTGCCCCGGTTCTTGGATGGATCAACGTTGCCATTTCCGTTTGTGTTTTCGCTGCGCCGTTGAGTATTGTGGCACATGTAATCCGCACAAAAAGTGTTGAATTCATGCCATTCAGTTTATCATTCTTCCTTACTTTGAGTGCCGTGATGTGGTTTGCCTATGGATTGTTCCTCAAGGACATATGCATAGCACTTCCAAACGTGTTAGGTTTTATCTTGGGTCTCCTTCAGATGCTGCTCTACGCCATATACAGAAACCGCAAGCCTGTCATATTTGATCCGGAGGACAAGCTCCGGGCGCCGGAACAAATGAAAAGTATTGTGATTCTGAGCACTATCCCAACTTCCGAAGTTCATCCGGTGGATGCTAAGCATTGCGATGGCAATGACGGCGAAGACGTGGACGGAAAAGATGGAAATAAGGAGGGTGATGGTGATGAACATGAGAAGTGCGTGGTGGTGCTGGTAGACATGGATGCATCAGGTGAGCTTCAACTGAAGTCTGATGAACCATGTGTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0008150 GO:0008643 GO:0015144 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034219 GO:0044425 GO:0044459 GO:0044464 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MtN3_slv

Protein Analysis

306

Amino Acids

34.08

Weight (kDa)

5.82

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	14 - 98	8.2e-26	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	135 - 219	2.3e-27	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004778)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13170
fragaria_vesca	FvH4_4g22110 FvH4_4g23160 FvH4_4g23160
malus_domestica	MD13G1124300.v1.1 MD16G1125300.v1.1
prunus_persica	Prupe.1G220700_v2.0.a1
pyrus_communis	pycom13g10870 pycom16g10670
rosa_chinensis	RchiOBHm_Chr4g0401811 RchiOBHm_Chr4g0422881 RchiOBHm_Chr4g0429511
rosa_laevigata	RLG00000007065 RLG00000009117
rosa_multiflora	Rmu_sc0000397.1_g000007 Rmu_sc0000830.1_g000029 Rmu_sc0003708.1_g000005
rosa_roxburghii	Rroxscaffold_5G00346500 Rroxscaffold_5G00364740 Rroxscaffold_5G00371200
rosa_rugosa	Rorug04G0236500 Rorug04G0236600
rosa_samantha	Rh4AG110000 Rh4AG292200 Rh4BG298000 Rh4CG313500 Rh4DG241100 Rh4DG295100
rosa_wichuraiana	Rw4G008920 Rw4G020890 Rw4G025310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	145, 691
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccI	GTMKAC	1 cut(s)	861
AccIII	TCCGGA	1 cut(s)	673
AciI	CCGC	2 cut(s)	478, 652
AclI	AACGTT	1 cut(s)	420
AclWI	GGATC	4 cut(s)	116, 349, 422, 665
AcsI	RAATTY	2 cut(s)	305, 494
AcuI	CTGAAG	3 cut(s)	150, 605, 911
AcyI	GRCGYC	1 cut(s)	692
AfaI	GTAC	2 cut(s)	263, 275
AfeI	AGCGCT	1 cut(s)	162
AfiI	CCNNNNNNNGG	5 cut(s)	180, 400, 407, 543, 694
AflIII	ACRYGT	2 cut(s)	469, 594
AgsI	TTSAA	4 cut(s)	115, 300, 494, 887
AjiI	CACGTC	1 cut(s)	793
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	3 cut(s)	8, 685, 883
AluI	AGCT	3 cut(s)	8, 685, 883
Alw21I	GWGCWC	1 cut(s)	728
Alw26I	GTCTC	2 cut(s)	248, 620
AlwI	GGATC	4 cut(s)	116, 349, 422, 665
AlwNI	CAGNNNCTG	1 cut(s)	628
Ama87I	CYCGRG	1 cut(s)	323
Aor13HI	TCCGGA	1 cut(s)	673
Aor51HI	AGCGCT	1 cut(s)	162
AoxI	GGCC	1 cut(s)	33
ApeKI	GCWGC	4 cut(s)	5, 217, 446, 628
ApoI	RAATTY	2 cut(s)	305, 494
AspLEI	GCGC	3 cut(s)	163, 451, 694
AspS9I	GGNCC	1 cut(s)	33
AsuC2I	CCSGG	2 cut(s)	401, 689
AsuHPI	GGTGA	3 cut(s)	833, 839, 890
AvaI	CYCGRG	1 cut(s)	323
BaeGI	GKGCMC	1 cut(s)	400
BanI	GGYRCC	2 cut(s)	145, 691
BbsI	GAAGAC	1 cut(s)	795
Bbv12I	GWGCWC	1 cut(s)	728
BbvI	GCAGC	4 cut(s)	17, 204, 433, 615
BccI	CCATC	4 cut(s)	405, 767, 800, 818
BceAI	ACGGC	3 cut(s)	436, 521, 799
BciT130I	CCWGG	1 cut(s)	31
BcnI	CCSGG	2 cut(s)	401, 689
BcoDI	GTCTC	2 cut(s)	248, 620
BfmI	CTRYAG	1 cut(s)	9
BfoI	RGCGCY	2 cut(s)	164, 695
BisI	GCNGC	4 cut(s)	6, 218, 447, 629
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	4 cut(s)	7, 219, 448, 630
Bme1390I	CCNGG	3 cut(s)	31, 401, 689
BmeT110I	CYCGRG	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	793
BmgT120I	GGNCC	1 cut(s)	33
BmiI	GGNNCC	2 cut(s)	147, 693
BmrFI	CCNGG	3 cut(s)	31, 401, 689
BmsI	GCATC	4 cut(s)	615, 748, 859, 881
BpiI	GAAGAC	1 cut(s)	795
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuEI	CTTGAG	1 cut(s)	551
BpuMI	CCSGG	2 cut(s)	401, 689
BsaHI	GRCGYC	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	620
BsaJI	CCNNGG	4 cut(s)	29, 30, 291, 399
BsaWI	WCCGGW	3 cut(s)	105, 673, 751
Bsc4I	CCNNNNNNNGG	5 cut(s)	180, 400, 407, 543, 694
Bse3DI	GCAATG	2 cut(s)	766, 784
BseAI	TCCGGA	1 cut(s)	673
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	4 cut(s)	29, 30, 291, 399
BseGI	GGATG	5 cut(s)	25, 416, 748, 763, 874
BseLI	CCNNNNNNNGG	5 cut(s)	180, 400, 407, 543, 694
BseMI	GCAATG	2 cut(s)	766, 784
BseMII	CTCAG	1 cut(s)	713
BseSI	GKGCMC	1 cut(s)	400
BseXI	GCAGC	4 cut(s)	17, 204, 433, 615
BshFI	GGCC	1 cut(s)	35
BshNI	GGYRCC	2 cut(s)	145, 691
BsiHKAI	GWGCWC	1 cut(s)	728
BsiHKCI	CYCGRG	1 cut(s)	323
BsiSI	CCGG	6 cut(s)	106, 401, 674, 688, 695, 752
BslFI	GGGAC	1 cut(s)	354
BslI	CCNNNNNNNGG	5 cut(s)	180, 400, 407, 543, 694
BsmAI	GTCTC	2 cut(s)	248, 620
BsmFI	GGGAC	1 cut(s)	354
BsnI	GGCC	1 cut(s)	35
Bso31I	GGTCTC	1 cut(s)	620
BsoBI	CYCGRG	1 cut(s)	323
Bsp1286I	GDGCHC	2 cut(s)	400, 728
Bsp13I	TCCGGA	1 cut(s)	673
Bsp1407I	TGTACA	2 cut(s)	261, 273
Bsp143I	GATC	4 cut(s)	108, 354, 414, 670
Bsp1720I	GCTNAGC	1 cut(s)	762
BspACI	CCGC	2 cut(s)	478, 652
BspANI	GGCC	1 cut(s)	35
BspCNI	CTCAG	1 cut(s)	714
BspEI	TCCGGA	1 cut(s)	673
BspHI	TCATGA	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	147, 693
BspPI	GGATC	4 cut(s)	116, 349, 422, 665
BspT107I	GGYRCC	2 cut(s)	145, 691
BspTNI	GGTCTC	1 cut(s)	620
BsrDI	GCAATG	2 cut(s)	766, 784
BsrGI	TGTACA	2 cut(s)	261, 273
BssECI	CCNNGG	4 cut(s)	29, 30, 291, 399
BssMI	GATC	4 cut(s)	108, 354, 414, 670
BssNI	GRCGYC	1 cut(s)	692
BssT1I	CCWWGG	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	372, 395
Bst6I	CTCTTC	1 cut(s)	350
BstACI	GRCGYC	1 cut(s)	692
BstAUI	TGTACA	2 cut(s)	261, 273
BstC8I	GCNNGC	1 cut(s)	656
BstDEI	CTNAG	3 cut(s)	82, 722, 762
BstF5I	GGATG	5 cut(s)	25, 416, 748, 763, 874
BstH2I	RGCGCY	2 cut(s)	164, 695
BstHHI	GCGC	3 cut(s)	163, 451, 694
BstKTI	GATC	4 cut(s)	111, 357, 417, 673
BstMAI	GTCTC	2 cut(s)	248, 620
BstMBI	GATC	4 cut(s)	108, 354, 414, 670
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 293, 691, 783
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	473
BstSCI	CCNGG	3 cut(s)	29, 399, 687
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	400
BstV1I	GCAGC	4 cut(s)	17, 204, 433, 615
BstV2I	GAAGAC	1 cut(s)	795
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	35
BtgZI	GCGATG	2 cut(s)	250, 786
BtrI	CACGTC	1 cut(s)	793
BtsCI	GGATG	5 cut(s)	25, 416, 748, 763, 874
Cac8I	GCNNGC	1 cut(s)	656
CaiI	CAGNNNCTG	1 cut(s)	628
CciI	TCATGA	1 cut(s)	330
CfoI	GCGC	3 cut(s)	163, 451, 694
Cfr13I	GGNCC	1 cut(s)	33
CseI	GACGC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	262, 274
CviAII	CATG	9 cut(s)	73, 196, 271, 331, 470, 499, 836, 865, 906
CviJI	RGCY	8 cut(s)	8, 35, 86, 184, 296, 658, 685, 883
CviKI_1	RGCY	8 cut(s)	8, 35, 86, 184, 296, 658, 685, 883
CviQI	GTAC	2 cut(s)	262, 274
DdeI	CTNAG	3 cut(s)	82, 722, 762
DinI	GGCGCC	1 cut(s)	693
DpnI	GATC	4 cut(s)	110, 356, 416, 672
DpnII	GATC	4 cut(s)	108, 354, 414, 670
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	620
Eco47III	AGCGCT	1 cut(s)	162
Eco57I	CTGAAG	3 cut(s)	150, 605, 911
Eco88I	CYCGRG	1 cut(s)	323
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	291
EcoT22I	ATGCAT	3 cut(s)	379, 581, 874
EgeI	GGCGCC	1 cut(s)	693
EheI	GGCGCC	1 cut(s)	693
ErhI	CCWWGG	1 cut(s)	291
FaeI	CATG	9 cut(s)	76, 199, 274, 334, 473, 502, 839, 868, 909
FaqI	GGGAC	1 cut(s)	354
FatI	CATG	9 cut(s)	72, 195, 270, 330, 469, 498, 835, 864, 905
FauNDI	CATATG	1 cut(s)	575
FblI	GTMKAC	1 cut(s)	861
Fnu4HI	GCNGC	4 cut(s)	6, 218, 447, 629
FokI	GGATG	5 cut(s)	12, 423, 735, 770, 881
Fsp4HI	GCNGC	4 cut(s)	6, 218, 447, 629
GlaI	GCGC	3 cut(s)	162, 450, 693
GluI	GCNGC	4 cut(s)	6, 218, 447, 629
HaeII	RGCGCY	2 cut(s)	164, 695
HaeIII	GGCC	1 cut(s)	35
HapII	CCGG	6 cut(s)	106, 401, 674, 688, 695, 752
HgaI	GACGC	1 cut(s)	26
HhaI	GCGC	3 cut(s)	163, 451, 694
Hin1I	GRCGYC	1 cut(s)	692
Hin1II	CATG	9 cut(s)	76, 199, 274, 334, 473, 502, 839, 868, 909
Hin6I	GCGC	3 cut(s)	161, 449, 692
HinP1I	GCGC	3 cut(s)	161, 449, 692
HinfI	GANTC	3 cut(s)	256, 342, 718
HpaII	CCGG	6 cut(s)	106, 401, 674, 688, 695, 752
HphI	GGTGA	3 cut(s)	833, 839, 890
Hpy166II	GTNNAC	3 cut(s)	79, 796, 862
Hpy188I	TCNGA	6 cut(s)	63, 242, 624, 723, 742, 898
Hpy188III	TCNNGA	2 cut(s)	331, 674
Hpy8I	GTNNAC	3 cut(s)	79, 796, 862
Hpy99I	CGWCG	1 cut(s)	100
HpyAV	CCTTC	3 cut(s)	79, 125, 629
HpyCH4III	ACNGT	2 cut(s)	372, 395
HpyCH4IV	ACGT	4 cut(s)	98, 420, 594, 792
HpyCH4V	TGCA	4 cut(s)	287, 377, 579, 872
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 293, 691, 783
HpyF3I	CTNAG	3 cut(s)	82, 722, 762
HpySE526I	ACGT	4 cut(s)	98, 420, 594, 792
Hsp92I	GRCGYC	1 cut(s)	692
Hsp92II	CATG	9 cut(s)	76, 199, 274, 334, 473, 502, 839, 868, 909
HspAI	GCGC	3 cut(s)	161, 449, 692
KasI	GGCGCC	1 cut(s)	691
Kpn2I	TCCGGA	1 cut(s)	673
Kzo9I	GATC	4 cut(s)	108, 354, 414, 670
LmnI	GCTCC	1 cut(s)	690
Lsp1109I	GCAGC	4 cut(s)	17, 204, 433, 615
LweI	GCATC	4 cut(s)	615, 748, 859, 881
MaeII	ACGT	4 cut(s)	98, 420, 594, 792
MaeIII	GTNAC	1 cut(s)	318
MalI	GATC	4 cut(s)	110, 356, 416, 672
MboI	GATC	4 cut(s)	108, 354, 414, 670
MboII	GAAGA	4 cut(s)	103, 337, 511, 800
MflI	RGATCY	1 cut(s)	108
MhlI	GDGCHC	2 cut(s)	400, 728
MluCI	AATT	2 cut(s)	305, 494
Mly113I	GGCGCC	1 cut(s)	692
MlyI	GAGTC	2 cut(s)	250, 336
MnlI	CCTC	3 cut(s)	575, 670, 811
Mph1103I	ATGCAT	3 cut(s)	379, 581, 874
MroI	TCCGGA	1 cut(s)	673
MslI	CAYNNNNRTG	2 cut(s)	269, 771
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	6 cut(s)	106, 401, 674, 688, 695, 752
MspR9I	CCNGG	3 cut(s)	31, 401, 689
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	4 cut(s)	11, 293, 691, 783
NarI	GGCGCC	1 cut(s)	692
NciI	CCSGG	2 cut(s)	401, 689
NdeI	CATATG	1 cut(s)	575
NdeII	GATC	4 cut(s)	108, 354, 414, 670
NlaIII	CATG	9 cut(s)	76, 199, 274, 334, 473, 502, 839, 868, 909
NlaIV	GGNNCC	2 cut(s)	147, 693
NsiI	ATGCAT	3 cut(s)	379, 581, 874
NspI	RCATGY	1 cut(s)	473
PagI	TCATGA	1 cut(s)	330
PasI	CCCWGGG	1 cut(s)	30
PciI	ACATGT	1 cut(s)	469
PcsI	WCGNNNNNNNCGW	1 cut(s)	789
PfeI	GAWTC	1 cut(s)	718
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	4 cut(s)	7, 219, 448, 630
PleI	GAGTC	2 cut(s)	250, 336
PluTI	GGCGCC	1 cut(s)	695
PpsI	GAGTC	2 cut(s)	250, 336
PscI	ACATGT	1 cut(s)	469
Psp1406I	AACGTT	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	2 cut(s)	147, 693
PspPI	GGNCC	1 cut(s)	33
PstNI	CAGNNNCTG	1 cut(s)	628
PsuI	RGATCY	1 cut(s)	108
PvuII	CAGCTG	1 cut(s)	8
RsaI	GTAC	2 cut(s)	263, 275
RsaNI	GTAC	2 cut(s)	262, 274
RseI	CAYNNNNRTG	2 cut(s)	269, 771
SatI	GCNGC	4 cut(s)	6, 218, 447, 629
Sau3AI	GATC	4 cut(s)	108, 354, 414, 670
Sau96I	GGNCC	1 cut(s)	33
SchI	GAGTC	2 cut(s)	250, 336
ScrFI	CCNGG	3 cut(s)	31, 401, 689
SduI	GDGCHC	2 cut(s)	400, 728
SfaNI	GCATC	4 cut(s)	615, 748, 859, 881
SfcI	CTRYAG	1 cut(s)	9
SfoI	GGCGCC	1 cut(s)	693
SmiMI	CAYNNNNRTG	2 cut(s)	269, 771
SmlI	CTYRAG	1 cut(s)	566
SmoI	CTYRAG	1 cut(s)	566
Sse9I	AATT	2 cut(s)	305, 494
SsiI	CCGC	2 cut(s)	478, 652
SspDI	GGCGCC	1 cut(s)	691
StyD4I	CCNGG	3 cut(s)	29, 399, 687
StyI	CCWWGG	1 cut(s)	291
TaaI	ACNGT	2 cut(s)	372, 395
TaiI	ACGT	4 cut(s)	101, 423, 597, 795
TaqI	TCGA	1 cut(s)	125
TasI	AATT	2 cut(s)	305, 494
TatI	WGTACW	2 cut(s)	261, 273
TfiI	GAWTC	1 cut(s)	718
TseI	GCWGC	4 cut(s)	5, 217, 446, 628
TspDTI	ATGAA	9 cut(s)	61, 319, 347, 371, 487, 719, 737, 846, 915
TspGWI	ACGGA	2 cut(s)	421, 813
Van91I	CCANNNNNTGG	1 cut(s)	180
XapI	RAATTY	2 cut(s)	305, 494
XceI	RCATGY	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	861
Zsp2I	ATGCAT	3 cut(s)	379, 581, 874

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.