AT5G38720

Ribosomal RNA-processing protein 7 (RRP7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0002008
Physical Location & Seq
Reverse (-)
15508196 .. 15510713
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38720.2

Sequence Viewer

Length: 921 bp
ATGAAGGAGACGAGAAAGCTGAAGAAGAGTAATCTCCCTAAAGAAGAAACTGTTGGGAAAAAAATTCAGAGGAAGAAGAATGAGAAAGTGAGCAATGTCGAATTAAGCGAGGATCCTCAGGCTGCACAGCTTCAAGCTAAATCAAGTGAGAAACCCAATAGAAAGAAGATTCAGAAGGGTAAGGAAATAAAAAGCTCTCCAGCTGATGGTAAGCTGAGTGGGAAGATGAAGAAGAGAAAAGAGAAAGTAGGCAATGTTGATATAAGCGAACCGATTCTGGAAGCTATTTCAACTGAGAAAGTAAAAGAAAAGAAGGGCAAAATGAACAAGACTAAGAAGAAAAGGAAGGCCGAGGAAATAACTAGATCTTCAGTCGAAGATCTGAAAAGAGAAAGCAAGTTTAAGAAATCAAATAAGAAGAAAAAGATGGACATGACCTCTAAGAAAGAGAACAAAATTGAAGAGGAGGAAGATGTTTATCAAATTTCTTCAGGCGATGAGGATTGCACAAGGGGAATGAAAAAGTGGGTTAGTGATTACTATGAGGGTAGACCTGGTTTAGACGAGCTCCAAAAGAGAATCGATGACTTCATGACTGCTCATGAAGAACGCCTTGAACAGGAGAAACAAGACAAAGAAGCTAAAGCTGCAGAAGGTGGATGGACTGTGGTCGTGCATCACAAAGGAAGGAAAAAGACAACAGAATCTGAAACCGGAACAGCCGTTGGATCTTTTTCTCAGGCTGCTTTGGAGGATAAGATCGCTAAAAAGAAACAGAGTGAGCCTGTCGCTCATGGTTTCTACCGTTTCCAAAGGCGAGATGCACAACGCAATGAACTCTTGGCGCTTCAGAGTAAGTTCGAGGAAGACAAGAAGAGGATACAACAACTTCGAGCTGCTCGTAGGTTTAAGCCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
RRP7

Protein Analysis

306

Amino Acids

35.36

Weight (kDa)

9.8

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP7 PF12923 203 - 325 9e-27 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 206
AccI GTMKAC 1 cut(s) 550
AclWI GGATC 3 cut(s) 107, 120, 736
AcsI RAATTY 2 cut(s) 63, 483
AcuI CTGAAG 4 cut(s) 41, 354, 474, 833
AfiI CCNNNNNNNGG 2 cut(s) 206, 619
AgsI TTSAA 4 cut(s) 134, 291, 461, 617
AjnI CCWGG 1 cut(s) 553
AjuI GAANNNNNNNTTGG 2 cut(s) 36, 68
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 3 cut(s) 107, 120, 736
AlwNI CAGNNNCTG 1 cut(s) 707
AoxI GGCC 1 cut(s) 348
ApeKI GCWGC 4 cut(s) 122, 647, 743, 896
ApoI RAATTY 2 cut(s) 63, 483
Asp700I GAANNNNTTC 1 cut(s) 273
AspLEI GCGC 1 cut(s) 847
AxyI CCTNAGG 1 cut(s) 117
BamHI GGATCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 570
BbsI GAAGAC 1 cut(s) 873
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 4 cut(s) 109, 634, 730, 883
BccI CCATC 3 cut(s) 200, 421, 654
BceAI ACGGC 1 cut(s) 707
BciT130I CCWGG 1 cut(s) 555
BciVI GTATCC 1 cut(s) 873
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 1 cut(s) 648
BfoI RGCGCY 1 cut(s) 848
BfuI GTATCC 1 cut(s) 873
BglII AGATCT 2 cut(s) 365, 379
BisI GCNGC 4 cut(s) 123, 648, 744, 897
BlsI GCNGC 4 cut(s) 124, 649, 745, 898
Bme1390I CCNGG 1 cut(s) 555
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 555
BmsI GCATC 2 cut(s) 685, 811
BoxI GACNNNNGTC 1 cut(s) 668
BpiI GAAGAC 1 cut(s) 873
BpmI CTGGAG 1 cut(s) 183
Bsa29I ATCGAT 1 cut(s) 582
BsaBI GATNNNNATC 1 cut(s) 477
BsaJI CCNNGG 1 cut(s) 351
BsaWI WCCGGW 1 cut(s) 713
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 619
Bse21I CCTNAGG 1 cut(s) 117
Bse3DI GCAATG 3 cut(s) 100, 259, 838
Bse8I GATNNNNATC 1 cut(s) 477
BseBI CCWGG 1 cut(s) 555
BseCI ATCGAT 1 cut(s) 582
BseDI CCNNGG 1 cut(s) 351
BseGI GGATG 1 cut(s) 665
BseJI GATNNNNATC 1 cut(s) 477
BseLI CCNNNNNNNGG 2 cut(s) 206, 619
BseMI GCAATG 3 cut(s) 100, 259, 838
BseMII CTCAG 4 cut(s) 131, 206, 285, 752
BseRI GAGGAG 1 cut(s) 479
BseXI GCAGC 4 cut(s) 109, 634, 730, 883
BsgI GTGCAG 1 cut(s) 108
BshFI GGCC 1 cut(s) 350
BshVI ATCGAT 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 1 cut(s) 714
BslI CCNNNNNNNGG 2 cut(s) 206, 619
BsmAI GTCTC 1 cut(s) 2
BsmBI CGTCTC 1 cut(s) 2
BsnI GGCC 1 cut(s) 350
Bsp1286I GDGCHC 1 cut(s) 570
Bsp143I GATC 5 cut(s) 112, 365, 379, 728, 759
BspANI GGCC 1 cut(s) 350
BspCNI CTCAG 4 cut(s) 130, 207, 286, 751
BspDI ATCGAT 1 cut(s) 582
BspHI TCATGA 2 cut(s) 591, 601
BspLI GGNNCC 1 cut(s) 114
BspMAI CTGCAG 1 cut(s) 652
BspPI GGATC 3 cut(s) 107, 120, 736
BsrDI GCAATG 3 cut(s) 100, 259, 838
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 5 cut(s) 112, 365, 379, 728, 759
Bst2UI CCWGG 1 cut(s) 555
Bst4CI ACNGT 3 cut(s) 52, 667, 806
Bst6I CTCTTC 4 cut(s) 20, 227, 456, 869
BstDEI CTNAG 6 cut(s) 117, 215, 294, 333, 441, 738
BstENI CCTNNNNNAGG 1 cut(s) 617
BstF5I GGATG 1 cut(s) 665
BstH2I RGCGCY 1 cut(s) 848
BstHHI GCGC 1 cut(s) 847
BstKTI GATC 5 cut(s) 115, 368, 382, 731, 762
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 5 cut(s) 112, 365, 379, 728, 759
BstMWI GCNNNNNNNGC 1 cut(s) 647
BstNI CCWGG 1 cut(s) 555
BstPAI GACNNNNGTC 1 cut(s) 668
BstSCI CCNGG 1 cut(s) 553
BstSFI CTRYAG 1 cut(s) 648
BstV1I GCAGC 4 cut(s) 109, 634, 730, 883
BstV2I GAAGAC 1 cut(s) 873
BstX2I RGATCY 4 cut(s) 112, 365, 379, 728
BstYI RGATCY 4 cut(s) 112, 365, 379, 728
Bsu15I ATCGAT 1 cut(s) 582
Bsu36I CCTNAGG 1 cut(s) 117
BsuI GTATCC 1 cut(s) 873
BsuRI GGCC 1 cut(s) 350
BsuTUI ATCGAT 1 cut(s) 582
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 1 cut(s) 665
CaiI CAGNNNCTG 1 cut(s) 707
CciI TCATGA 2 cut(s) 591, 601
CfoI GCGC 1 cut(s) 847
ClaI ATCGAT 1 cut(s) 582
CsiI ACCWGGT 1 cut(s) 553
CviAII CATG 4 cut(s) 433, 592, 602, 794
DdeI CTNAG 6 cut(s) 117, 215, 294, 333, 441, 738
DpnI GATC 5 cut(s) 114, 367, 381, 730, 761
DpnII GATC 5 cut(s) 112, 365, 379, 728, 759
Eam1104I CTCTTC 4 cut(s) 20, 227, 456, 869
EarI CTCTTC 4 cut(s) 20, 227, 456, 869
Ecl136II GAGCTC 1 cut(s) 568
Eco24I GRGCYC 1 cut(s) 570
Eco53kI GAGCTC 1 cut(s) 568
Eco57I CTGAAG 4 cut(s) 41, 354, 474, 833
Eco81I CCTNAGG 1 cut(s) 117
EcoICRI GAGCTC 1 cut(s) 568
EcoNI CCTNNNNNAGG 1 cut(s) 617
EcoRII CCWGG 1 cut(s) 553
EcoT38I GRGCYC 1 cut(s) 570
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 4 cut(s) 436, 595, 605, 797
FaiI YATR 6 cut(s) 263, 434, 543, 593, 603, 795
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FatI CATG 4 cut(s) 432, 591, 601, 793
FblI GTMKAC 1 cut(s) 550
Fnu4HI GCNGC 4 cut(s) 123, 648, 744, 897
FokI GGATG 1 cut(s) 672
FriOI GRGCYC 1 cut(s) 570
Fsp4HI GCNGC 4 cut(s) 123, 648, 744, 897
FspBI CTAG 1 cut(s) 363
GlaI GCGC 1 cut(s) 846
GluI GCNGC 4 cut(s) 123, 648, 744, 897
GsuI CTGGAG 1 cut(s) 183
HaeII RGCGCY 1 cut(s) 848
HaeIII GGCC 1 cut(s) 350
HapII CCGG 1 cut(s) 714
HhaI GCGC 1 cut(s) 847
Hin1II CATG 4 cut(s) 436, 595, 605, 797
Hin6I GCGC 1 cut(s) 845
HinP1I GCGC 1 cut(s) 845
HinfI GANTC 4 cut(s) 169, 274, 579, 704
HpaII CCGG 1 cut(s) 714
Hpy166II GTNNAC 1 cut(s) 551
Hpy188I TCNGA 5 cut(s) 69, 174, 384, 709, 852
Hpy188III TCNNGA 3 cut(s) 278, 592, 602
Hpy8I GTNNAC 1 cut(s) 551
HpyAV CCTTC 5 cut(s) 169, 307, 340, 647, 681
HpyCH4III ACNGT 3 cut(s) 52, 667, 806
HpyCH4V TGCA 5 cut(s) 125, 507, 650, 676, 824
HpyF10VI GCNNNNNNNGC 1 cut(s) 647
HpyF3I CTNAG 6 cut(s) 117, 215, 294, 333, 441, 738
Hsp92II CATG 4 cut(s) 436, 595, 605, 797
HspAI GCGC 1 cut(s) 845
Kzo9I GATC 5 cut(s) 112, 365, 379, 728, 759
LmnI GCTCC 1 cut(s) 573
Lsp1109I GCAGC 4 cut(s) 109, 634, 730, 883
LweI GCATC 2 cut(s) 685, 811
MabI ACCWGGT 1 cut(s) 553
MaeI CTAG 1 cut(s) 363
MalI GATC 5 cut(s) 114, 367, 381, 730, 761
MboI GATC 5 cut(s) 112, 365, 379, 728, 759
MflI RGATCY 4 cut(s) 112, 365, 379, 728
MhlI GDGCHC 1 cut(s) 570
MluCI AATT 4 cut(s) 63, 101, 456, 483
MmeI TCCRAC 1 cut(s) 706
MroXI GAANNNNTTC 1 cut(s) 273
MseI TTAA 3 cut(s) 104, 402, 909
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 1 cut(s) 714
MspR9I CCNGG 1 cut(s) 555
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 1 cut(s) 647
NdeII GATC 5 cut(s) 112, 365, 379, 728, 759
NlaIII CATG 4 cut(s) 436, 595, 605, 797
NlaIV GGNNCC 1 cut(s) 114
NmeAIII GCCGAG 1 cut(s) 376
PagI TCATGA 2 cut(s) 591, 601
PcsI WCGNNNNNNNCGW 2 cut(s) 105, 898
PdmI GAANNNNTTC 1 cut(s) 273
PfeI GAWTC 4 cut(s) 169, 274, 579, 704
PflMI CCANNNNNTGG 1 cut(s) 206
PkrI GCNGC 4 cut(s) 124, 649, 745, 898
PshAI GACNNNNGTC 1 cut(s) 668
Psp124BI GAGCTC 1 cut(s) 570
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PspN4I GGNNCC 1 cut(s) 114
PstI CTGCAG 1 cut(s) 652
PstNI CAGNNNCTG 1 cut(s) 707
PsuI RGATCY 4 cut(s) 112, 365, 379, 728
PvuII CAGCTG 1 cut(s) 203
SacI GAGCTC 1 cut(s) 570
SaqAI TTAA 3 cut(s) 104, 402, 909
SatI GCNGC 4 cut(s) 123, 648, 744, 897
Sau3AI GATC 5 cut(s) 112, 365, 379, 728, 759
ScrFI CCNGG 1 cut(s) 555
SduI GDGCHC 1 cut(s) 570
SexAI ACCWGGT 1 cut(s) 553
SfaNI GCATC 2 cut(s) 685, 811
SfcI CTRYAG 1 cut(s) 648
Sse9I AATT 4 cut(s) 63, 101, 456, 483
SspMI CTAG 1 cut(s) 363
SstI GAGCTC 1 cut(s) 570
StyD4I CCNGG 1 cut(s) 553
TaaI ACNGT 3 cut(s) 52, 667, 806
TaqI TCGA 5 cut(s) 99, 375, 582, 861, 892
TasI AATT 4 cut(s) 63, 101, 456, 483
TfiI GAWTC 4 cut(s) 169, 274, 579, 704
Tru1I TTAA 3 cut(s) 104, 402, 909
Tru9I TTAA 3 cut(s) 104, 402, 909
TseI GCWGC 4 cut(s) 122, 647, 743, 896
TspDTI ATGAA 7 cut(s) 17, 242, 338, 533, 580, 618, 849
Van91I CCANNNNNTGG 1 cut(s) 206
XagI CCTNNNNNAGG 1 cut(s) 617
XapI RAATTY 2 cut(s) 63, 483
XmiI GTMKAC 1 cut(s) 550
XmnI GAANNNNTTC 1 cut(s) 273
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.