Rh4AG031000

Ribosomal RNA-processing protein 7 (RRP7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002008
Physical Location & Seq
Forward (+)
6559186 .. 6571108
11923 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG031000.1

Sequence Viewer

Length: 339 bp
ATGTTAGGTAAGTCAAAGAAAGCTAGGAAAAAGAAAAAGAAGAATCGTGATTCCTTCGAAGATGGGAAGTTACTGGAAAAGAGAGTGGAAGCTGTTAGAGATGAACCTTGTCATCTCTATTCAGTGGATGAGGACTGCTCAAGAGAAATAACAATTTTGGAAGTAGAAAATGGGTGTACAACCCACGCATCAATCTCTCTGATAAAGAAGATGCAGAAGATCACTTATCTGGACGGGAAGGGAAGAGGCACGGAGACCGGGATGCTGCTTCAAGTCATAAAGGATGGCCAGACCGAATATGAAGGCAACGTTGCCTCCCTCAAGGCACCACAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
RRP7

Protein Analysis

112

Amino Acids

12.6

Weight (kDa)

8.96

Isoelectric Point (pI)

28.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 325
AclI AACGTT 1 cut(s) 309
AcoI YGGCCR 1 cut(s) 286
AfaI GTAC 1 cut(s) 178
AgsI TTSAA 1 cut(s) 272
AleI CACNNNNGTG 1 cut(s) 334
AluBI AGCT 3 cut(s) 23, 92, 334
AluI AGCT 3 cut(s) 23, 92, 334
Alw26I GTCTC 1 cut(s) 248
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 265
AsuC2I CCSGG 1 cut(s) 259
AsuII TTCGAA 1 cut(s) 57
BalI TGGCCA 1 cut(s) 288
BanI GGYRCC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 252
BccI CCATC 2 cut(s) 56, 278
BcnI CCSGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 248
BfaI CTAG 1 cut(s) 24
BisI GCNGC 1 cut(s) 266
BlsI GCNGC 1 cut(s) 267
Bme1390I CCNGG 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 327
BmrFI CCNGG 1 cut(s) 259
BmsI GCATC 3 cut(s) 197, 201, 252
BplI GAGNNNNNCTC 2 cut(s) 122, 154
Bpu14I TTCGAA 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 124, 305
BpuMI CCSGG 1 cut(s) 259
BsaI GGTCTC 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bse1I ACTGG 1 cut(s) 78
BseGI GGATG 3 cut(s) 133, 267, 289
BseNI ACTGG 1 cut(s) 78
BseXI GCAGC 1 cut(s) 252
BshFI GGCC 1 cut(s) 288
BshNI GGYRCC 1 cut(s) 325
BsiSI CCGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 248
BsnI GGCC 1 cut(s) 288
Bso31I GGTCTC 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 57
Bsp1407I TGTACA 1 cut(s) 176
Bsp143I GATC 1 cut(s) 219
BspANI GGCC 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 327
BspT104I TTCGAA 1 cut(s) 57
BspT107I GGYRCC 1 cut(s) 325
BspTNI GGTCTC 1 cut(s) 248
BsrGI TGTACA 1 cut(s) 176
BsrI ACTGG 1 cut(s) 78
BssMI GATC 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 238
BstAUI TGTACA 1 cut(s) 176
BstBI TTCGAA 1 cut(s) 57
BstF5I GGATG 3 cut(s) 133, 267, 289
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 248
BstMBI GATC 1 cut(s) 219
BstSCI CCNGG 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 252
BsuRI GGCC 1 cut(s) 288
BtsCI GGATG 3 cut(s) 133, 267, 289
BtsIMutI CAGTG 1 cut(s) 129
Csp6I GTAC 1 cut(s) 177
CviJI RGCY 4 cut(s) 23, 92, 288, 334
CviKI_1 RGCY 4 cut(s) 23, 92, 288, 334
CviQI GTAC 1 cut(s) 177
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 238
EarI CTCTTC 1 cut(s) 238
Eco31I GGTCTC 1 cut(s) 248
FaiI YATR 2 cut(s) 278, 300
Fnu4HI GCNGC 1 cut(s) 266
FokI GGATG 3 cut(s) 140, 274, 296
Fsp4HI GCNGC 1 cut(s) 266
FspBI CTAG 1 cut(s) 24
GluI GCNGC 1 cut(s) 266
HaeIII GGCC 1 cut(s) 288
HapII CCGG 1 cut(s) 258
HinfI GANTC 2 cut(s) 43, 50
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 1 cut(s) 177
Hpy188I TCNGA 1 cut(s) 201
Hpy188III TCNNGA 3 cut(s) 47, 141, 230
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 3 cut(s) 64, 232, 296
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 1 cut(s) 214
HpySE526I ACGT 1 cut(s) 309
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 4 cut(s) 59, 215, 271, 302
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 3 cut(s) 197, 201, 252
MaeI CTAG 1 cut(s) 24
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 1 cut(s) 69
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 5 cut(s) 52, 71, 220, 229, 255
MlsI TGGCCA 1 cut(s) 288
MluCI AATT 1 cut(s) 153
MluNI TGGCCA 1 cut(s) 288
MnlI CCTC 4 cut(s) 124, 239, 325, 329
Mox20I TGGCCA 1 cut(s) 288
MscI TGGCCA 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 334
Msp20I TGGCCA 1 cut(s) 288
MspA1I CMGCKG 1 cut(s) 334
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 259
NciI CCSGG 1 cut(s) 259
NdeII GATC 1 cut(s) 219
NlaIV GGNNCC 1 cut(s) 327
NspV TTCGAA 1 cut(s) 57
OliI CACNNNNGTG 1 cut(s) 334
PfeI GAWTC 2 cut(s) 43, 50
PkrI GCNGC 1 cut(s) 267
Psp1406I AACGTT 1 cut(s) 309
PspN4I GGNNCC 1 cut(s) 327
PvuII CAGCTG 1 cut(s) 334
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 334
SatI GCNGC 1 cut(s) 266
Sau3AI GATC 1 cut(s) 219
ScrFI CCNGG 1 cut(s) 259
SetI ASST 6 cut(s) 10, 25, 94, 109, 312, 336
SfaNI GCATC 3 cut(s) 197, 201, 252
SfuI TTCGAA 1 cut(s) 57
SmiMI CAYNNNNRTG 1 cut(s) 334
SmlI CTYRAG 2 cut(s) 139, 320
SmoI CTYRAG 2 cut(s) 139, 320
Sse9I AATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 24
StyD4I CCNGG 1 cut(s) 257
TaiI ACGT 1 cut(s) 312
TaqI TCGA 1 cut(s) 57
TaqII GACCGA 1 cut(s) 308
TasI AATT 1 cut(s) 153
TatI WGTACW 1 cut(s) 176
TfiI GAWTC 2 cut(s) 43, 50
TscAI CASTG 1 cut(s) 129
TseI GCWGC 1 cut(s) 265
TspDTI ATGAA 2 cut(s) 117, 315
TspGWI ACGGA 1 cut(s) 266
TspRI CASTG 1 cut(s) 129
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.