FvH4_6g45790

Ribosomal RNA-processing protein 7 (RRP7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002008
Physical Location & Seq
Reverse (-)
35069038 .. 35072972
3935 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g45790.t2

Sequence Viewer

Length: 1062 bp
ATGGGACTTAAGGACAAGAAGAAGAGCAAAAAGAACAAGGAGCTTGCCCAGAGAGATTTGGAGCCTGTTGAAAAGGATAAAAAGGCCGGACCTTCAGAGATGAGAAAGAGAAAAAGAGACAAGGAAAACAATGGTGATTTGAGAAAAGACGTTCAGATCTCTATTGAAGATAATTCTCCTAAAGCGGCCAATGACAAGAAAAGGACAACGAAACTGAGGAAAGGAAAAGTAAAGAAGGTGAAGAACAATCACGGTTTGGATGGACAACATGATCCCTCTAATACTGATGGTTTTGGTGAATTAAATGACGATGAAGCAGTGGATGATCAGAGCCAATTCGAAATACAAGGAGAGACTGGAAGTGCTGAAATGGTGTCCAATGAAGTTGATCGTAAGTCAAAGAGACCTAGGAAAAAGAAAAAGGATCGCAATTCATTGGATGACTTGGAAAAGAGAGTAGAAGCTGTTCAAAGTGAACCTTGTCATCTCTTTTCAGTGGATGAGAGCTGCTCAAGAGAAATAACAAGCATATCCAAGAAATCTCAGAAAAAGAAGAGGGATATGAGTTCATCAAATCCTAAGAAGCCATTGGAAAAGAAAGAAGAAGCTAGTCAGGAGGATGTTTACCTTATCTCCTCTGAGGATGAGGGGAGCCCAAAAGGAATGAAAAAATGGATTATGGAATACCAGCAAAATAGACCTGGATTGAAGGTACTGCAGCAAAGAATTGATGAGTTCATTATTGCACATGAGGCAAAATTGGAACAGGAAAGAAAAGAAAGAGAAGCCCTTTCTGCTGAAGAGGGATGGCAACTTGTACAACATCATAAAGGAAGAAAGAAGACCAAAGATGCTGATGGAATTACAGTAGGTTCTGTTGCCCAGGCTGTTGTAGAAAGCAAGAGGGCCAAGAAGAAGAATACAGATGTTGGGCTAGATTTTTACCGGTTCCAGAGGAAAGAAGCTCAGAGGAATGAAATTATGATGCTTCAGAGCAAATTTGAGCAGGATAAAAAGCGGATACAGCAGATAAGAGCAGCAAGGAAATTCAAACCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
RRP7

Protein Analysis

354

Amino Acids

40.78

Weight (kDa)

9.58

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP7 PF12923 231 - 325 7.3e-14 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 185, 1018
AclWI GGATC 2 cut(s) 266, 432
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 2 cut(s) 998, 1046
AcuI CTGAAG 3 cut(s) 78, 819, 974
AfaI GTAC 2 cut(s) 714, 819
AflII CTTAAG 1 cut(s) 8
AgeI ACCGGT 1 cut(s) 945
AgsI TTSAA 5 cut(s) 71, 167, 470, 709, 1051
AjnI CCWGG 2 cut(s) 700, 882
AluBI AGCT 5 cut(s) 43, 464, 507, 608, 965
AluI AGCT 5 cut(s) 43, 464, 507, 608, 965
Alw26I GTCTC 3 cut(s) 111, 347, 397
AlwI GGATC 2 cut(s) 266, 432
AoxI GGCC 3 cut(s) 84, 186, 906
ApeKI GCWGC 3 cut(s) 507, 718, 1037
ApoI RAATTY 2 cut(s) 998, 1046
AsiGI ACCGGT 1 cut(s) 945
Asp700I GAANNNNTTC 1 cut(s) 465
AspA2I CCTAGG 1 cut(s) 407
AspS9I GGNCC 2 cut(s) 89, 906
AsuHPI GGTGA 3 cut(s) 146, 250, 308
AsuII TTCGAA 1 cut(s) 339
AvaII GGWCC 1 cut(s) 89
AvrII CCTAGG 1 cut(s) 407
BanII GRGCYC 1 cut(s) 656
BbsI GAAGAC 1 cut(s) 848
BbvI GCAGC 3 cut(s) 494, 730, 1049
BccI CCATC 4 cut(s) 254, 281, 801, 851
BciT130I CCWGG 2 cut(s) 702, 884
BciVI GTATCC 1 cut(s) 1014
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 3 cut(s) 111, 347, 397
BfaI CTAG 3 cut(s) 408, 609, 935
BfmI CTRYAG 1 cut(s) 716
BfrI CTTAAG 1 cut(s) 8
BfuI GTATCC 1 cut(s) 1014
BglII AGATCT 1 cut(s) 156
BisI GCNGC 4 cut(s) 186, 508, 719, 1038
BlnI CCTAGG 1 cut(s) 407
BlsI GCNGC 4 cut(s) 187, 509, 720, 1039
Bme1390I CCNGG 2 cut(s) 702, 884
Bme18I GGWCC 1 cut(s) 89
BmgT120I GGNCC 2 cut(s) 89, 906
BmiI GGNNCC 3 cut(s) 63, 653, 950
BmrFI CCNGG 2 cut(s) 702, 884
BmsI GCATC 2 cut(s) 841, 975
BpiI GAAGAC 1 cut(s) 848
BplI GAGNNNNNCTC 2 cut(s) 494, 526
Bpu14I TTCGAA 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 496
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 2 cut(s) 407, 882
BsaWI WCCGGW 1 cut(s) 945
BsaXI ACNNNNNCTCC 2 cut(s) 617, 647
Bse118I RCCGGY 1 cut(s) 945
Bse1I ACTGG 1 cut(s) 361
BseBI CCWGG 2 cut(s) 702, 884
BseDI CCNNGG 2 cut(s) 407, 882
BseGI GGATG 7 cut(s) 265, 328, 445, 505, 625, 649, 812
BseMII CTCAG 4 cut(s) 206, 557, 630, 980
BseNI ACTGG 1 cut(s) 361
BseRI GAGGAG 1 cut(s) 625
BseXI GCAGC 3 cut(s) 494, 730, 1049
BshFI GGCC 3 cut(s) 86, 188, 908
BshTI ACCGGT 1 cut(s) 945
BsiSI CCGG 2 cut(s) 87, 946
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 3 cut(s) 111, 347, 397
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 3 cut(s) 86, 188, 908
Bso31I GGTCTC 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 656
Bsp1407I TGTACA 1 cut(s) 817
Bsp143I GATC 5 cut(s) 156, 271, 325, 388, 424
BspACI CCGC 2 cut(s) 185, 1018
BspANI GGCC 3 cut(s) 86, 188, 908
BspCNI CTCAG 4 cut(s) 207, 556, 631, 979
BspLI GGNNCC 3 cut(s) 63, 653, 950
BspMAI CTGCAG 1 cut(s) 720
BspPI GGATC 2 cut(s) 266, 432
BspQI GCTCTTC 1 cut(s) 17
BspT104I TTCGAA 1 cut(s) 339
BspTI CTTAAG 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 397
BsrFI RCCGGY 1 cut(s) 945
BsrGI TGTACA 1 cut(s) 817
BsrI ACTGG 1 cut(s) 361
BssAI RCCGGY 1 cut(s) 945
BssECI CCNNGG 2 cut(s) 407, 882
BssMI GATC 5 cut(s) 156, 271, 325, 388, 424
BssT1I CCWWGG 1 cut(s) 407
Bst2UI CCWGG 2 cut(s) 702, 884
Bst4CI ACNGT 2 cut(s) 254, 868
Bst6I CTCTTC 3 cut(s) 17, 548, 795
BstAFI CTTAAG 1 cut(s) 8
BstAUI TGTACA 1 cut(s) 817
BstBI TTCGAA 1 cut(s) 339
BstC8I GCNNGC 1 cut(s) 45
BstDEI CTNAG 5 cut(s) 215, 543, 579, 639, 966
BstF5I GGATG 7 cut(s) 265, 328, 445, 505, 625, 649, 812
BstKTI GATC 5 cut(s) 159, 274, 328, 391, 427
BstMAI GTCTC 3 cut(s) 111, 347, 397
BstMBI GATC 5 cut(s) 156, 271, 325, 388, 424
BstMWI GCNNNNNNNGC 3 cut(s) 752, 794, 1024
BstNI CCWGG 2 cut(s) 702, 884
BstSCI CCNGG 2 cut(s) 700, 882
BstSFI CTRYAG 1 cut(s) 716
BstV1I GCAGC 3 cut(s) 494, 730, 1049
BstV2I GAAGAC 1 cut(s) 848
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuI GTATCC 1 cut(s) 1014
BsuRI GGCC 3 cut(s) 86, 188, 908
BtsCI GGATG 7 cut(s) 265, 328, 445, 505, 625, 649, 812
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 2 cut(s) 324, 501
Cac8I GCNNGC 1 cut(s) 45
Cfr10I RCCGGY 1 cut(s) 945
Cfr13I GGNCC 2 cut(s) 89, 906
Csp6I GTAC 2 cut(s) 713, 818
CspAI ACCGGT 1 cut(s) 945
CviAII CATG 2 cut(s) 269, 749
CviQI GTAC 2 cut(s) 713, 818
DdeI CTNAG 5 cut(s) 215, 543, 579, 639, 966
DpnI GATC 5 cut(s) 158, 273, 327, 390, 426
DpnII GATC 5 cut(s) 156, 271, 325, 388, 424
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 3 cut(s) 17, 548, 795
EarI CTCTTC 3 cut(s) 17, 548, 795
Eco130I CCWWGG 1 cut(s) 407
Eco24I GRGCYC 1 cut(s) 656
Eco31I GGTCTC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 3 cut(s) 78, 819, 974
EcoRII CCWGG 2 cut(s) 700, 882
EcoT14I CCWWGG 1 cut(s) 407
EcoT38I GRGCYC 1 cut(s) 656
ErhI CCWWGG 1 cut(s) 407
FaeI CATG 2 cut(s) 272, 752
FaiI YATR 8 cut(s) 270, 530, 563, 680, 750, 828, 983, 1057
FalI AAGNNNNNCTT 2 cut(s) 463, 495
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 268, 748
FbaI TGATCA 1 cut(s) 325
Fnu4HI GCNGC 4 cut(s) 186, 508, 719, 1038
FokI GGATG 7 cut(s) 272, 335, 452, 512, 632, 656, 819
FriOI GRGCYC 1 cut(s) 656
Fsp4HI GCNGC 4 cut(s) 186, 508, 719, 1038
FspBI CTAG 3 cut(s) 408, 609, 935
GluI GCNGC 4 cut(s) 186, 508, 719, 1038
HaeIII GGCC 3 cut(s) 86, 188, 908
HapII CCGG 2 cut(s) 87, 946
Hin1II CATG 2 cut(s) 272, 752
HpaII CCGG 2 cut(s) 87, 946
HphI GGTGA 3 cut(s) 146, 250, 308
Hpy166II GTNNAC 2 cut(s) 476, 625
Hpy188I TCNGA 7 cut(s) 97, 156, 330, 546, 640, 969, 993
Hpy188III TCNNGA 3 cut(s) 513, 614, 952
Hpy8I GTNNAC 2 cut(s) 476, 625
HpyAV CCTTC 3 cut(s) 102, 229, 703
HpyCH4III ACNGT 2 cut(s) 254, 868
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 718, 746
HpyF10VI GCNNNNNNNGC 3 cut(s) 752, 794, 1024
HpyF3I CTNAG 5 cut(s) 215, 543, 579, 639, 966
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 2 cut(s) 272, 752
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 5 cut(s) 156, 271, 325, 388, 424
LguI GCTCTTC 1 cut(s) 17
LmnI GCTCC 3 cut(s) 40, 61, 651
Lsp1109I GCAGC 3 cut(s) 494, 730, 1049
LweI GCATC 2 cut(s) 841, 975
MaeI CTAG 3 cut(s) 408, 609, 935
MaeII ACGT 1 cut(s) 150
MalI GATC 5 cut(s) 158, 273, 327, 390, 426
MboI GATC 5 cut(s) 156, 271, 325, 388, 424
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 656
MroXI GAANNNNTTC 1 cut(s) 465
MseI TTAA 2 cut(s) 9, 302
MspCI CTTAAG 1 cut(s) 8
MspI CCGG 2 cut(s) 87, 946
MspR9I CCNGG 2 cut(s) 702, 884
MvaI CCWGG 2 cut(s) 702, 884
MwoI GCNNNNNNNGC 3 cut(s) 752, 794, 1024
NdeII GATC 5 cut(s) 156, 271, 325, 388, 424
NlaIII CATG 2 cut(s) 272, 752
NlaIV GGNNCC 3 cut(s) 63, 653, 950
NspV TTCGAA 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 17
PdmI GAANNNNTTC 1 cut(s) 465
PinAI ACCGGT 1 cut(s) 945
PkrI GCNGC 4 cut(s) 187, 509, 720, 1039
Psp6I CCWGG 2 cut(s) 700, 882
PspGI CCWGG 2 cut(s) 700, 882
PspN4I GGNNCC 3 cut(s) 63, 653, 950
PspPI GGNCC 2 cut(s) 89, 906
PsrI GAACNNNNNNTAC 2 cut(s) 450, 482
PstI CTGCAG 1 cut(s) 720
PsuI RGATCY 1 cut(s) 156
RsaI GTAC 2 cut(s) 714, 819
RsaNI GTAC 2 cut(s) 713, 818
SapI GCTCTTC 1 cut(s) 17
SaqAI TTAA 2 cut(s) 9, 302
SatI GCNGC 4 cut(s) 186, 508, 719, 1038
Sau3AI GATC 5 cut(s) 156, 271, 325, 388, 424
Sau96I GGNCC 2 cut(s) 89, 906
ScrFI CCNGG 2 cut(s) 702, 884
SduI GDGCHC 1 cut(s) 656
SfaNI GCATC 2 cut(s) 841, 975
SfcI CTRYAG 1 cut(s) 716
SfuI TTCGAA 1 cut(s) 339
SinI GGWCC 1 cut(s) 89
SmlI CTYRAG 2 cut(s) 8, 511
SmoI CTYRAG 2 cut(s) 8, 511
SsiI CCGC 2 cut(s) 185, 1018
SspMI CTAG 3 cut(s) 408, 609, 935
StyD4I CCNGG 2 cut(s) 700, 882
StyI CCWWGG 1 cut(s) 407
TaaI ACNGT 2 cut(s) 254, 868
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 339
TatI WGTACW 1 cut(s) 817
TauI GCSGC 1 cut(s) 188
Tru1I TTAA 2 cut(s) 9, 302
Tru9I TTAA 2 cut(s) 9, 302
TscAI CASTG 2 cut(s) 324, 501
TseI GCWGC 3 cut(s) 507, 718, 1037
TspDTI ATGAA 7 cut(s) 327, 396, 423, 558, 680, 727, 990
TspRI CASTG 2 cut(s) 324, 501
Vha464I CTTAAG 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 2 cut(s) 998, 1046
XmaJI CCTAGG 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 465
XspI CTAG 3 cut(s) 408, 609, 935
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.